Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment

Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these...
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Autor*in:	Ziling Zhang [verfasserIn] Tao Tong [verfasserIn] Yunxia Fang [verfasserIn] Junjun Zheng [verfasserIn] Xian Zhang [verfasserIn] Chunyu Niu [verfasserIn] Jia Li [verfasserIn] Xiaoqin Zhang [verfasserIn] Dawei Xue [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2020

Schlagwörter:	barley ABC gene family gene expression abiotic stress

Übergeordnetes Werk:	In: Plants - MDPI AG, 2013, 9(2020), 10, p 1281
Übergeordnetes Werk:	volume:9 ; year:2020 ; number:10, p 1281

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/plants9101281

Katalog-ID:	DOAJ004698592

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520			\|a Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA–ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley.
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spelling	10.3390/plants9101281 doi (DE-627)DOAJ004698592 (DE-599)DOAJ4a4a4a2f1e1d438790fae4ac8daf4799 DE-627 ger DE-627 rakwb eng QK1-989 Ziling Zhang verfasserin aut Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA–ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley. barley ABC gene family gene expression abiotic stress Botany Tao Tong verfasserin aut Yunxia Fang verfasserin aut Junjun Zheng verfasserin aut Xian Zhang verfasserin aut Chunyu Niu verfasserin aut Jia Li verfasserin aut Xiaoqin Zhang verfasserin aut Dawei Xue verfasserin aut In Plants MDPI AG, 2013 9(2020), 10, p 1281 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:9 year:2020 number:10, p 1281 https://doi.org/10.3390/plants9101281 kostenfrei https://doaj.org/article/4a4a4a2f1e1d438790fae4ac8daf4799 kostenfrei https://www.mdpi.com/2223-7747/9/10/1281 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2020 10, p 1281
allfields_unstemmed	10.3390/plants9101281 doi (DE-627)DOAJ004698592 (DE-599)DOAJ4a4a4a2f1e1d438790fae4ac8daf4799 DE-627 ger DE-627 rakwb eng QK1-989 Ziling Zhang verfasserin aut Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA–ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley. barley ABC gene family gene expression abiotic stress Botany Tao Tong verfasserin aut Yunxia Fang verfasserin aut Junjun Zheng verfasserin aut Xian Zhang verfasserin aut Chunyu Niu verfasserin aut Jia Li verfasserin aut Xiaoqin Zhang verfasserin aut Dawei Xue verfasserin aut In Plants MDPI AG, 2013 9(2020), 10, p 1281 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:9 year:2020 number:10, p 1281 https://doi.org/10.3390/plants9101281 kostenfrei https://doaj.org/article/4a4a4a2f1e1d438790fae4ac8daf4799 kostenfrei https://www.mdpi.com/2223-7747/9/10/1281 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2020 10, p 1281
allfieldsGer	10.3390/plants9101281 doi (DE-627)DOAJ004698592 (DE-599)DOAJ4a4a4a2f1e1d438790fae4ac8daf4799 DE-627 ger DE-627 rakwb eng QK1-989 Ziling Zhang verfasserin aut Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA–ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley. barley ABC gene family gene expression abiotic stress Botany Tao Tong verfasserin aut Yunxia Fang verfasserin aut Junjun Zheng verfasserin aut Xian Zhang verfasserin aut Chunyu Niu verfasserin aut Jia Li verfasserin aut Xiaoqin Zhang verfasserin aut Dawei Xue verfasserin aut In Plants MDPI AG, 2013 9(2020), 10, p 1281 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:9 year:2020 number:10, p 1281 https://doi.org/10.3390/plants9101281 kostenfrei https://doaj.org/article/4a4a4a2f1e1d438790fae4ac8daf4799 kostenfrei https://www.mdpi.com/2223-7747/9/10/1281 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2020 10, p 1281
allfieldsSound	10.3390/plants9101281 doi (DE-627)DOAJ004698592 (DE-599)DOAJ4a4a4a2f1e1d438790fae4ac8daf4799 DE-627 ger DE-627 rakwb eng QK1-989 Ziling Zhang verfasserin aut Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA–ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley. barley ABC gene family gene expression abiotic stress Botany Tao Tong verfasserin aut Yunxia Fang verfasserin aut Junjun Zheng verfasserin aut Xian Zhang verfasserin aut Chunyu Niu verfasserin aut Jia Li verfasserin aut Xiaoqin Zhang verfasserin aut Dawei Xue verfasserin aut In Plants MDPI AG, 2013 9(2020), 10, p 1281 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:9 year:2020 number:10, p 1281 https://doi.org/10.3390/plants9101281 kostenfrei https://doaj.org/article/4a4a4a2f1e1d438790fae4ac8daf4799 kostenfrei https://www.mdpi.com/2223-7747/9/10/1281 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2020 10, p 1281
language	English
source	In Plants 9(2020), 10, p 1281 volume:9 year:2020 number:10, p 1281
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institution	findex.gbv.de
topic_facet	barley ABC gene family gene expression abiotic stress Botany
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container_title	Plants
authorswithroles_txt_mv	Ziling Zhang @@aut@@ Tao Tong @@aut@@ Yunxia Fang @@aut@@ Junjun Zheng @@aut@@ Xian Zhang @@aut@@ Chunyu Niu @@aut@@ Jia Li @@aut@@ Xiaoqin Zhang @@aut@@ Dawei Xue @@aut@@
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callnumber-first	Q - Science
author	Ziling Zhang
spellingShingle	Ziling Zhang misc QK1-989 misc barley misc ABC gene family misc gene expression misc abiotic stress misc Botany Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment
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topic_title	QK1-989 Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment barley ABC gene family gene expression abiotic stress
topic	misc QK1-989 misc barley misc ABC gene family misc gene expression misc abiotic stress misc Botany
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title	Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment
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title_full	Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment
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title_sort	genome-wide identification of barley abc genes and their expression in response to abiotic stress treatment
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title_auth	Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment
abstract	Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA–ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley.
abstractGer	Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA–ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley.
abstract_unstemmed	Adenosine triphosphate-binding cassette transporters (ABC transporters) participate in various plant growth and abiotic stress responses. In the present study, 131 ABC genes in barley were systematically identified using bioinformatics. Based on the classification method of the family in rice, these members were classified into eight subfamilies (ABCA–ABCG, ABCI). The conserved domain, amino acid composition, physicochemical properties, chromosome distribution, and tissue expression of these genes were predicted and analyzed. The results showed that the characteristic motifs of the barley ABC genes were highly conserved and there were great diversities in the homology of the transmembrane domain, the number of exons, amino acid length, and the molecular weight, whereas the span of the isoelectric point was small. Tissue expression profile analysis suggested that ABC genes possess non-tissue specificity. Ultimately, 15 differentially expressed genes exhibited diverse expression responses to stress treatments including drought, cadmium, and salt stress, indicating that the ABCB and ABCG subfamilies function in the response to abiotic stress in barley.
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container_issue	10, p 1281
title_short	Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment
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Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment

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