Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.)

Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pin...
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Autor*in:	Mengnan Chai [verfasserIn] Han Cheng [verfasserIn] Maokai Yan [verfasserIn] SVGN Priyadarshani [verfasserIn] Man Zhang [verfasserIn] Qing He [verfasserIn] Youmei Huang [verfasserIn] Fangqian Chen [verfasserIn] Liping Liu [verfasserIn] Xiaoyi Huang [verfasserIn] Linyi Lai [verfasserIn] Huihuang Chen [verfasserIn] Hanyang Cai [verfasserIn] Yuan Qin [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2020

Schlagwörter:	Pineapple DREB transcription factors Phylogenetic analysis Expression profiles

Übergeordnetes Werk:	In: PeerJ - PeerJ Inc., 2013, 8, p e9006(2020)
Übergeordnetes Werk:	volume:8, p e9006 ; year:2020

Links:	Link aufrufen Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.7717/peerj.9006

Katalog-ID:	DOAJ010897844

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520			\|a Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance.
650		4	\|a Pineapple
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allfields	10.7717/peerj.9006 doi (DE-627)DOAJ010897844 (DE-599)DOAJ8f03e946297049e4a34f1fbb00a6a81b DE-627 ger DE-627 rakwb eng QH301-705.5 Mengnan Chai verfasserin aut Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance. Pineapple DREB transcription factors Phylogenetic analysis Expression profiles Medicine R Biology (General) Han Cheng verfasserin aut Maokai Yan verfasserin aut SVGN Priyadarshani verfasserin aut Man Zhang verfasserin aut Qing He verfasserin aut Youmei Huang verfasserin aut Fangqian Chen verfasserin aut Liping Liu verfasserin aut Xiaoyi Huang verfasserin aut Linyi Lai verfasserin aut Huihuang Chen verfasserin aut Hanyang Cai verfasserin aut Yuan Qin verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e9006(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e9006 year:2020 https://doi.org/10.7717/peerj.9006 kostenfrei https://doaj.org/article/8f03e946297049e4a34f1fbb00a6a81b kostenfrei https://peerj.com/articles/9006.pdf kostenfrei https://peerj.com/articles/9006/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e9006 2020
spelling	10.7717/peerj.9006 doi (DE-627)DOAJ010897844 (DE-599)DOAJ8f03e946297049e4a34f1fbb00a6a81b DE-627 ger DE-627 rakwb eng QH301-705.5 Mengnan Chai verfasserin aut Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance. Pineapple DREB transcription factors Phylogenetic analysis Expression profiles Medicine R Biology (General) Han Cheng verfasserin aut Maokai Yan verfasserin aut SVGN Priyadarshani verfasserin aut Man Zhang verfasserin aut Qing He verfasserin aut Youmei Huang verfasserin aut Fangqian Chen verfasserin aut Liping Liu verfasserin aut Xiaoyi Huang verfasserin aut Linyi Lai verfasserin aut Huihuang Chen verfasserin aut Hanyang Cai verfasserin aut Yuan Qin verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e9006(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e9006 year:2020 https://doi.org/10.7717/peerj.9006 kostenfrei https://doaj.org/article/8f03e946297049e4a34f1fbb00a6a81b kostenfrei https://peerj.com/articles/9006.pdf kostenfrei https://peerj.com/articles/9006/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e9006 2020
allfields_unstemmed	10.7717/peerj.9006 doi (DE-627)DOAJ010897844 (DE-599)DOAJ8f03e946297049e4a34f1fbb00a6a81b DE-627 ger DE-627 rakwb eng QH301-705.5 Mengnan Chai verfasserin aut Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance. Pineapple DREB transcription factors Phylogenetic analysis Expression profiles Medicine R Biology (General) Han Cheng verfasserin aut Maokai Yan verfasserin aut SVGN Priyadarshani verfasserin aut Man Zhang verfasserin aut Qing He verfasserin aut Youmei Huang verfasserin aut Fangqian Chen verfasserin aut Liping Liu verfasserin aut Xiaoyi Huang verfasserin aut Linyi Lai verfasserin aut Huihuang Chen verfasserin aut Hanyang Cai verfasserin aut Yuan Qin verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e9006(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e9006 year:2020 https://doi.org/10.7717/peerj.9006 kostenfrei https://doaj.org/article/8f03e946297049e4a34f1fbb00a6a81b kostenfrei https://peerj.com/articles/9006.pdf kostenfrei https://peerj.com/articles/9006/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e9006 2020
allfieldsGer	10.7717/peerj.9006 doi (DE-627)DOAJ010897844 (DE-599)DOAJ8f03e946297049e4a34f1fbb00a6a81b DE-627 ger DE-627 rakwb eng QH301-705.5 Mengnan Chai verfasserin aut Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance. Pineapple DREB transcription factors Phylogenetic analysis Expression profiles Medicine R Biology (General) Han Cheng verfasserin aut Maokai Yan verfasserin aut SVGN Priyadarshani verfasserin aut Man Zhang verfasserin aut Qing He verfasserin aut Youmei Huang verfasserin aut Fangqian Chen verfasserin aut Liping Liu verfasserin aut Xiaoyi Huang verfasserin aut Linyi Lai verfasserin aut Huihuang Chen verfasserin aut Hanyang Cai verfasserin aut Yuan Qin verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e9006(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e9006 year:2020 https://doi.org/10.7717/peerj.9006 kostenfrei https://doaj.org/article/8f03e946297049e4a34f1fbb00a6a81b kostenfrei https://peerj.com/articles/9006.pdf kostenfrei https://peerj.com/articles/9006/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e9006 2020
allfieldsSound	10.7717/peerj.9006 doi (DE-627)DOAJ010897844 (DE-599)DOAJ8f03e946297049e4a34f1fbb00a6a81b DE-627 ger DE-627 rakwb eng QH301-705.5 Mengnan Chai verfasserin aut Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance. Pineapple DREB transcription factors Phylogenetic analysis Expression profiles Medicine R Biology (General) Han Cheng verfasserin aut Maokai Yan verfasserin aut SVGN Priyadarshani verfasserin aut Man Zhang verfasserin aut Qing He verfasserin aut Youmei Huang verfasserin aut Fangqian Chen verfasserin aut Liping Liu verfasserin aut Xiaoyi Huang verfasserin aut Linyi Lai verfasserin aut Huihuang Chen verfasserin aut Hanyang Cai verfasserin aut Yuan Qin verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e9006(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e9006 year:2020 https://doi.org/10.7717/peerj.9006 kostenfrei https://doaj.org/article/8f03e946297049e4a34f1fbb00a6a81b kostenfrei https://peerj.com/articles/9006.pdf kostenfrei https://peerj.com/articles/9006/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e9006 2020
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Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. 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callnumber-first	Q - Science
author	Mengnan Chai
spellingShingle	Mengnan Chai misc QH301-705.5 misc Pineapple misc DREB transcription factors misc Phylogenetic analysis misc Expression profiles misc Medicine misc R misc Biology (General) Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.)
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topic_title	QH301-705.5 Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.) Pineapple DREB transcription factors Phylogenetic analysis Expression profiles
topic	misc QH301-705.5 misc Pineapple misc DREB transcription factors misc Phylogenetic analysis misc Expression profiles misc Medicine misc R misc Biology (General)
topic_unstemmed	misc QH301-705.5 misc Pineapple misc DREB transcription factors misc Phylogenetic analysis misc Expression profiles misc Medicine misc R misc Biology (General)
topic_browse	misc QH301-705.5 misc Pineapple misc DREB transcription factors misc Phylogenetic analysis misc Expression profiles misc Medicine misc R misc Biology (General)
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title	Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.)
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title_full	Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.)
author_sort	Mengnan Chai
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author_browse	Mengnan Chai Han Cheng Maokai Yan SVGN Priyadarshani Man Zhang Qing He Youmei Huang Fangqian Chen Liping Liu Xiaoyi Huang Linyi Lai Huihuang Chen Hanyang Cai Yuan Qin
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title_sort	identification and expression analysis of the dreb transcription factor family in pineapple (ananas comosus (l.) merr.)
callnumber	QH301-705.5
title_auth	Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.)
abstract	Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance.
abstractGer	Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance.
abstract_unstemmed	Background Dehydration responsive element-binding (DREB) transcription factors play a crucial role in plant growth, development and stress responses. Although DREB genes have been characterized in many plant species, genome-wide identification of the DREB gene family has not yet been reported in pineapple (Ananas comosus (L.) Merr.). Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. Our results provide preliminary data for future functional analysis of AcoDREB genes in pineapple, and useful information for developing new pineapple varieties with key agronomic traits such as stress tolerance.
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title_short	Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.)
url	https://doi.org/10.7717/peerj.9006 https://doaj.org/article/8f03e946297049e4a34f1fbb00a6a81b https://peerj.com/articles/9006.pdf https://peerj.com/articles/9006/ https://doaj.org/toc/2167-8359
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author2	Han Cheng Maokai Yan SVGN Priyadarshani Man Zhang Qing He Youmei Huang Fangqian Chen Liping Liu Xiaoyi Huang Linyi Lai Huihuang Chen Hanyang Cai Yuan Qin
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up_date	2024-07-03T17:21:52.963Z
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Results Using comprehensive genome-wide screening, we identified 20 AcoDREB genes on 14 chromosomes. These were categorized into five subgroups. AcoDREBs within a group had similar gene structures and domain compositions. Using gene structure analysis, we showed that most AcoDREB genes (75%) lacked introns, and that the promoter regions of all 20 AcoDREB genes had at least one stress response-related cis-element. We identified four genes with high expression levels and six genes with low expression levels in all analyzed tissues. We detected expression changes under abiotic stress for eight selected AcoDREB genes. Conclusions This report presents the first genome-wide analysis of the DREB transcription factor family in pineapple. 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Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.)

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