Identification and Characterization of Key Genes Responsible for Weedy and Cultivar Growth Types in Soybean

In cultivated plants, shoot morphology is an important factor that influences crop economic value. However, the effects of gene expression patterns on shoot morphology are not clearly understood. In this study, the molecular mechanism behind shoot morphology (including leaf, stem, and node) was anal...
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Autor*in:	Prakash Basnet [verfasserIn] Taeyoung Um [verfasserIn] Neha Samir Roy [verfasserIn] Woo Suk Cho [verfasserIn] Soo Chul Park [verfasserIn] Kyong-Cheul Park [verfasserIn] Ik-Young Choi [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2022

Schlagwörter:	weedy type cultivar type transcriptome differentially expressed genes phytohormone

Übergeordnetes Werk:	In: Frontiers in Genetics - Frontiers Media S.A., 2011, 13(2022)
Übergeordnetes Werk:	volume:13 ; year:2022

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3389/fgene.2022.805347

Katalog-ID:	DOAJ013727753

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topic_facet	weedy type cultivar type transcriptome differentially expressed genes phytohormone Genetics
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authorswithroles_txt_mv	Prakash Basnet @@aut@@ Taeyoung Um @@aut@@ Neha Samir Roy @@aut@@ Woo Suk Cho @@aut@@ Soo Chul Park @@aut@@ Kyong-Cheul Park @@aut@@ Ik-Young Choi @@aut@@
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callnumber-first	Q - Science
author	Prakash Basnet
spellingShingle	Prakash Basnet misc QH426-470 misc weedy type misc cultivar type misc transcriptome misc differentially expressed genes misc phytohormone misc Genetics Identification and Characterization of Key Genes Responsible for Weedy and Cultivar Growth Types in Soybean
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topic_title	QH426-470 Identification and Characterization of Key Genes Responsible for Weedy and Cultivar Growth Types in Soybean weedy type cultivar type transcriptome differentially expressed genes phytohormone
topic	misc QH426-470 misc weedy type misc cultivar type misc transcriptome misc differentially expressed genes misc phytohormone misc Genetics
topic_unstemmed	misc QH426-470 misc weedy type misc cultivar type misc transcriptome misc differentially expressed genes misc phytohormone misc Genetics
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title	Identification and Characterization of Key Genes Responsible for Weedy and Cultivar Growth Types in Soybean
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title_full	Identification and Characterization of Key Genes Responsible for Weedy and Cultivar Growth Types in Soybean
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author_browse	Prakash Basnet Taeyoung Um Neha Samir Roy Woo Suk Cho Soo Chul Park Kyong-Cheul Park Ik-Young Choi
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title_sort	identification and characterization of key genes responsible for weedy and cultivar growth types in soybean
callnumber	QH426-470
title_auth	Identification and Characterization of Key Genes Responsible for Weedy and Cultivar Growth Types in Soybean
abstract	In cultivated plants, shoot morphology is an important factor that influences crop economic value. However, the effects of gene expression patterns on shoot morphology are not clearly understood. In this study, the molecular mechanism behind shoot morphology (including leaf, stem, and node) was analyzed using RNA sequencing to compare weedy (creeper) and cultivar (stand) growth types obtained in F7 derived from a cross of wild and cultivated soybeans. A total of 12,513 (in leaves), 14,255 (in stems), and 11,850 (in nodes) differentially expressed genes were identified among weedy and cultivar soybeans. Comparative transcriptome and expression analyses revealed 22 phytohormone-responsive genes. We found that GIBBERELLIN 2-OXIDASE 8 (GA2ox), SPINDLY (SPY), FERONIA (FER), AUXIN RESPONSE FACTOR 8 (ARF8), CYTOKININ DEHYDROGENASE-1 (CKX1), and ARABIDOPSIS HISTIDINE KINASE-3 (AHK3), which are crucial phytohormone response genes, were mainly regulated in the shoot of weedy and cultivar types. These results indicate that interactions between phytohormone signaling genes regulate shoot morphology in weedy and cultivar growth type plants. Our study provides insights that are useful for breeding and improving crops to generate high-yield soybean varieties.
abstractGer	In cultivated plants, shoot morphology is an important factor that influences crop economic value. However, the effects of gene expression patterns on shoot morphology are not clearly understood. In this study, the molecular mechanism behind shoot morphology (including leaf, stem, and node) was analyzed using RNA sequencing to compare weedy (creeper) and cultivar (stand) growth types obtained in F7 derived from a cross of wild and cultivated soybeans. A total of 12,513 (in leaves), 14,255 (in stems), and 11,850 (in nodes) differentially expressed genes were identified among weedy and cultivar soybeans. Comparative transcriptome and expression analyses revealed 22 phytohormone-responsive genes. We found that GIBBERELLIN 2-OXIDASE 8 (GA2ox), SPINDLY (SPY), FERONIA (FER), AUXIN RESPONSE FACTOR 8 (ARF8), CYTOKININ DEHYDROGENASE-1 (CKX1), and ARABIDOPSIS HISTIDINE KINASE-3 (AHK3), which are crucial phytohormone response genes, were mainly regulated in the shoot of weedy and cultivar types. These results indicate that interactions between phytohormone signaling genes regulate shoot morphology in weedy and cultivar growth type plants. Our study provides insights that are useful for breeding and improving crops to generate high-yield soybean varieties.
abstract_unstemmed	In cultivated plants, shoot morphology is an important factor that influences crop economic value. However, the effects of gene expression patterns on shoot morphology are not clearly understood. In this study, the molecular mechanism behind shoot morphology (including leaf, stem, and node) was analyzed using RNA sequencing to compare weedy (creeper) and cultivar (stand) growth types obtained in F7 derived from a cross of wild and cultivated soybeans. A total of 12,513 (in leaves), 14,255 (in stems), and 11,850 (in nodes) differentially expressed genes were identified among weedy and cultivar soybeans. Comparative transcriptome and expression analyses revealed 22 phytohormone-responsive genes. We found that GIBBERELLIN 2-OXIDASE 8 (GA2ox), SPINDLY (SPY), FERONIA (FER), AUXIN RESPONSE FACTOR 8 (ARF8), CYTOKININ DEHYDROGENASE-1 (CKX1), and ARABIDOPSIS HISTIDINE KINASE-3 (AHK3), which are crucial phytohormone response genes, were mainly regulated in the shoot of weedy and cultivar types. These results indicate that interactions between phytohormone signaling genes regulate shoot morphology in weedy and cultivar growth type plants. Our study provides insights that are useful for breeding and improving crops to generate high-yield soybean varieties.
collection_details	GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700
title_short	Identification and Characterization of Key Genes Responsible for Weedy and Cultivar Growth Types in Soybean
url	https://doi.org/10.3389/fgene.2022.805347 https://doaj.org/article/69e2297a26a7429a82817eaab0a84afc https://www.frontiersin.org/articles/10.3389/fgene.2022.805347/full https://doaj.org/toc/1664-8021
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author2	Taeyoung Um Neha Samir Roy Woo Suk Cho Soo Chul Park Kyong-Cheul Park Ik-Young Choi
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up_date	2024-07-03T19:15:22.526Z
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Identification and Characterization of Key Genes Responsible for Weedy and Cultivar Growth Types in Soybean

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