Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process

The cultivated cucumber (<i<Cucumis sativus</i< L.) was reported to have been developed from a wild cucumber (<i<Cucumis hystrix</i< Chakrav.), nevertheless, these two organisms exhibit noteworthy differences. For example, the wild cucumber is known for its high resistance to...
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Autor*in:	Eslam M. Abdel-Salam [verfasserIn] Mohammad Faisal [verfasserIn] Abdulrahman A. Alatar [verfasserIn] Quaiser Saquib [verfasserIn] Hend A. Alwathnani [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2020

Schlagwörter:	transcriptomics transcription factors gene ontology evolutionary changes

Übergeordnetes Werk:	In: Plants - MDPI AG, 2013, 9(2020), 1, p 63
Übergeordnetes Werk:	volume:9 ; year:2020 ; number:1, p 63

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/plants9010063

Katalog-ID:	DOAJ014584395

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520			\|a The cultivated cucumber (<i<Cucumis sativus</i< L.) was reported to have been developed from a wild cucumber (<i<Cucumis hystrix</i< Chakrav.), nevertheless, these two organisms exhibit noteworthy differences. For example, the wild cucumber is known for its high resistance to different biotic and abiotic stresses. Moreover, the leaves and fruits of the wild cucumber have a bitter taste compared to the cultivated cucumber. These differences could be attributed mainly to the differences in gene expression levels. In the present investigation, we analyzed the RNA-sequencing data to show the differentially expressed genes (DEGs) between the wild and cultivated cucumbers. The identified DEGs were further utilized for Gene Ontology (GO) and pathway enrichment analysis and for identification of transcription factors and regulators. In the results, several enriched GO terms in the biological process, cellular component, and molecular functions categories were identified and various enriched pathways, especially the biosynthesis pathways of secondary products were recognized. Plant-specific transcription factor families were differentially expressed between the wild and cultivated cucumbers. The results obtained provide preliminary evidence for the transcriptional differences between the wild and cultivated cucumbers which developed during the domestication process as a result of natural and/or artificial selection, and they formulate the basis for future genetic research and improvement of the cultivated cucumber.
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spelling	10.3390/plants9010063 doi (DE-627)DOAJ014584395 (DE-599)DOAJb4ca2694e4fa41dd94f1644d39b8b9fa DE-627 ger DE-627 rakwb eng QK1-989 Eslam M. Abdel-Salam verfasserin aut Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The cultivated cucumber (<i<Cucumis sativus</i< L.) was reported to have been developed from a wild cucumber (<i<Cucumis hystrix</i< Chakrav.), nevertheless, these two organisms exhibit noteworthy differences. For example, the wild cucumber is known for its high resistance to different biotic and abiotic stresses. Moreover, the leaves and fruits of the wild cucumber have a bitter taste compared to the cultivated cucumber. These differences could be attributed mainly to the differences in gene expression levels. In the present investigation, we analyzed the RNA-sequencing data to show the differentially expressed genes (DEGs) between the wild and cultivated cucumbers. The identified DEGs were further utilized for Gene Ontology (GO) and pathway enrichment analysis and for identification of transcription factors and regulators. In the results, several enriched GO terms in the biological process, cellular component, and molecular functions categories were identified and various enriched pathways, especially the biosynthesis pathways of secondary products were recognized. Plant-specific transcription factor families were differentially expressed between the wild and cultivated cucumbers. The results obtained provide preliminary evidence for the transcriptional differences between the wild and cultivated cucumbers which developed during the domestication process as a result of natural and/or artificial selection, and they formulate the basis for future genetic research and improvement of the cultivated cucumber. transcriptomics <i<cucumis sativus</i< transcription factors gene ontology evolutionary changes Botany Mohammad Faisal verfasserin aut Abdulrahman A. Alatar verfasserin aut Quaiser Saquib verfasserin aut Hend A. Alwathnani verfasserin aut In Plants MDPI AG, 2013 9(2020), 1, p 63 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:9 year:2020 number:1, p 63 https://doi.org/10.3390/plants9010063 kostenfrei https://doaj.org/article/b4ca2694e4fa41dd94f1644d39b8b9fa kostenfrei https://www.mdpi.com/2223-7747/9/1/63 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2020 1, p 63
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language	English
source	In Plants 9(2020), 1, p 63 volume:9 year:2020 number:1, p 63
sourceStr	In Plants 9(2020), 1, p 63 volume:9 year:2020 number:1, p 63
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institution	findex.gbv.de
topic_facet	transcriptomics <i<cucumis sativus</i< transcription factors gene ontology evolutionary changes Botany
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container_title	Plants
authorswithroles_txt_mv	Eslam M. Abdel-Salam @@aut@@ Mohammad Faisal @@aut@@ Abdulrahman A. Alatar @@aut@@ Quaiser Saquib @@aut@@ Hend A. Alwathnani @@aut@@
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callnumber-first	Q - Science
author	Eslam M. Abdel-Salam
spellingShingle	Eslam M. Abdel-Salam misc QK1-989 misc transcriptomics misc <i<cucumis sativus</i< misc transcription factors misc gene ontology misc evolutionary changes misc Botany Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process
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topic_title	QK1-989 Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process transcriptomics <i<cucumis sativus</i< transcription factors gene ontology evolutionary changes
topic	misc QK1-989 misc transcriptomics misc <i<cucumis sativus</i< misc transcription factors misc gene ontology misc evolutionary changes misc Botany
topic_unstemmed	misc QK1-989 misc transcriptomics misc <i<cucumis sativus</i< misc transcription factors misc gene ontology misc evolutionary changes misc Botany
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title	Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process
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title_full	Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process
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author_browse	Eslam M. Abdel-Salam Mohammad Faisal Abdulrahman A. Alatar Quaiser Saquib Hend A. Alwathnani
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title_sort	comparative analysis between wild and cultivated cucumbers reveals transcriptional changes during domestication process
callnumber	QK1-989
title_auth	Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process
abstract	The cultivated cucumber (<i<Cucumis sativus</i< L.) was reported to have been developed from a wild cucumber (<i<Cucumis hystrix</i< Chakrav.), nevertheless, these two organisms exhibit noteworthy differences. For example, the wild cucumber is known for its high resistance to different biotic and abiotic stresses. Moreover, the leaves and fruits of the wild cucumber have a bitter taste compared to the cultivated cucumber. These differences could be attributed mainly to the differences in gene expression levels. In the present investigation, we analyzed the RNA-sequencing data to show the differentially expressed genes (DEGs) between the wild and cultivated cucumbers. The identified DEGs were further utilized for Gene Ontology (GO) and pathway enrichment analysis and for identification of transcription factors and regulators. In the results, several enriched GO terms in the biological process, cellular component, and molecular functions categories were identified and various enriched pathways, especially the biosynthesis pathways of secondary products were recognized. Plant-specific transcription factor families were differentially expressed between the wild and cultivated cucumbers. The results obtained provide preliminary evidence for the transcriptional differences between the wild and cultivated cucumbers which developed during the domestication process as a result of natural and/or artificial selection, and they formulate the basis for future genetic research and improvement of the cultivated cucumber.
abstractGer	The cultivated cucumber (<i<Cucumis sativus</i< L.) was reported to have been developed from a wild cucumber (<i<Cucumis hystrix</i< Chakrav.), nevertheless, these two organisms exhibit noteworthy differences. For example, the wild cucumber is known for its high resistance to different biotic and abiotic stresses. Moreover, the leaves and fruits of the wild cucumber have a bitter taste compared to the cultivated cucumber. These differences could be attributed mainly to the differences in gene expression levels. In the present investigation, we analyzed the RNA-sequencing data to show the differentially expressed genes (DEGs) between the wild and cultivated cucumbers. The identified DEGs were further utilized for Gene Ontology (GO) and pathway enrichment analysis and for identification of transcription factors and regulators. In the results, several enriched GO terms in the biological process, cellular component, and molecular functions categories were identified and various enriched pathways, especially the biosynthesis pathways of secondary products were recognized. Plant-specific transcription factor families were differentially expressed between the wild and cultivated cucumbers. The results obtained provide preliminary evidence for the transcriptional differences between the wild and cultivated cucumbers which developed during the domestication process as a result of natural and/or artificial selection, and they formulate the basis for future genetic research and improvement of the cultivated cucumber.
abstract_unstemmed	The cultivated cucumber (<i<Cucumis sativus</i< L.) was reported to have been developed from a wild cucumber (<i<Cucumis hystrix</i< Chakrav.), nevertheless, these two organisms exhibit noteworthy differences. For example, the wild cucumber is known for its high resistance to different biotic and abiotic stresses. Moreover, the leaves and fruits of the wild cucumber have a bitter taste compared to the cultivated cucumber. These differences could be attributed mainly to the differences in gene expression levels. In the present investigation, we analyzed the RNA-sequencing data to show the differentially expressed genes (DEGs) between the wild and cultivated cucumbers. The identified DEGs were further utilized for Gene Ontology (GO) and pathway enrichment analysis and for identification of transcription factors and regulators. In the results, several enriched GO terms in the biological process, cellular component, and molecular functions categories were identified and various enriched pathways, especially the biosynthesis pathways of secondary products were recognized. Plant-specific transcription factor families were differentially expressed between the wild and cultivated cucumbers. The results obtained provide preliminary evidence for the transcriptional differences between the wild and cultivated cucumbers which developed during the domestication process as a result of natural and/or artificial selection, and they formulate the basis for future genetic research and improvement of the cultivated cucumber.
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title_short	Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process
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Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process

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