Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China
Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spa...
Ausführliche Beschreibung
Autor*in: |
Xiangli Ma [verfasserIn] Min Tang [verfasserIn] Yufen Bi [verfasserIn] Junbo Yang [verfasserIn] |
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Englisch |
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2021 |
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In: Journal of the American Society for Horticultural Science - American Society for Horticultural Science (ASHS), 2020, 146(2021), 6, Seite 424-434 |
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Übergeordnetes Werk: |
volume:146 ; year:2021 ; number:6 ; pages:424-434 |
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DOAJ018398235 |
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(DE-627)DOAJ018398235 (DE-599)DOAJ3bf7fbdd70144f2493e64241d87e3870 DE-627 ger DE-627 rakwb eng SB1-1110 Xiangli Ma verfasserin aut Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spacers (psbM-trnD, trnV-trnA, accD-psal, rrn23, trnk-rps16, and ycf1) were analyzed in 404 wild individuals from 28 populations in the three river area in Yunnan Province, China. The results showed that the six chloroplast DNA sequences were aligned with 61 polymorphic sites, including 50 indels and 11 haplotypes in 404 individuals, which revealed a low level of genetic diversity (total genetic diversity = 0.240, and the average value of nucleotide diversity = 0.00024). In addition, a fairly low genetic differentiation [coefficients for genetic differentiation among populations (GST) = 0.099, number of substitution (NST) = 0.081] was found among the studied populations, and NST value was less than GST, which indicated that no significant phylogeographic structure existed in those populations. Furthermore, analysis of molecular variance revealed that great genetic variance (91%) came from individuals within the populations, which indicated that there was no clear genetic differentiation among populations. On the basis of these findings, a conservation plan was proposed to sample or preserve fewer populations but with more individuals from each population. conservation genetic differentiation orchid three parallel rivers region Plant culture Min Tang verfasserin aut Yufen Bi verfasserin aut Junbo Yang verfasserin aut In Journal of the American Society for Horticultural Science American Society for Horticultural Science (ASHS), 2020 146(2021), 6, Seite 424-434 (DE-627)325792151 (DE-600)2040057-3 23279788 nnns volume:146 year:2021 number:6 pages:424-434 https://doi.org/10.21273/JASHS05046-21 kostenfrei https://doaj.org/article/3bf7fbdd70144f2493e64241d87e3870 kostenfrei https://journals.ashs.org/jashs/view/journals/jashs/146/6/article-p424.xml kostenfrei https://doaj.org/toc/2327-9788 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 146 2021 6 424-434 |
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(DE-627)DOAJ018398235 (DE-599)DOAJ3bf7fbdd70144f2493e64241d87e3870 DE-627 ger DE-627 rakwb eng SB1-1110 Xiangli Ma verfasserin aut Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spacers (psbM-trnD, trnV-trnA, accD-psal, rrn23, trnk-rps16, and ycf1) were analyzed in 404 wild individuals from 28 populations in the three river area in Yunnan Province, China. The results showed that the six chloroplast DNA sequences were aligned with 61 polymorphic sites, including 50 indels and 11 haplotypes in 404 individuals, which revealed a low level of genetic diversity (total genetic diversity = 0.240, and the average value of nucleotide diversity = 0.00024). In addition, a fairly low genetic differentiation [coefficients for genetic differentiation among populations (GST) = 0.099, number of substitution (NST) = 0.081] was found among the studied populations, and NST value was less than GST, which indicated that no significant phylogeographic structure existed in those populations. Furthermore, analysis of molecular variance revealed that great genetic variance (91%) came from individuals within the populations, which indicated that there was no clear genetic differentiation among populations. On the basis of these findings, a conservation plan was proposed to sample or preserve fewer populations but with more individuals from each population. conservation genetic differentiation orchid three parallel rivers region Plant culture Min Tang verfasserin aut Yufen Bi verfasserin aut Junbo Yang verfasserin aut In Journal of the American Society for Horticultural Science American Society for Horticultural Science (ASHS), 2020 146(2021), 6, Seite 424-434 (DE-627)325792151 (DE-600)2040057-3 23279788 nnns volume:146 year:2021 number:6 pages:424-434 https://doi.org/10.21273/JASHS05046-21 kostenfrei https://doaj.org/article/3bf7fbdd70144f2493e64241d87e3870 kostenfrei https://journals.ashs.org/jashs/view/journals/jashs/146/6/article-p424.xml kostenfrei https://doaj.org/toc/2327-9788 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 146 2021 6 424-434 |
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(DE-627)DOAJ018398235 (DE-599)DOAJ3bf7fbdd70144f2493e64241d87e3870 DE-627 ger DE-627 rakwb eng SB1-1110 Xiangli Ma verfasserin aut Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spacers (psbM-trnD, trnV-trnA, accD-psal, rrn23, trnk-rps16, and ycf1) were analyzed in 404 wild individuals from 28 populations in the three river area in Yunnan Province, China. The results showed that the six chloroplast DNA sequences were aligned with 61 polymorphic sites, including 50 indels and 11 haplotypes in 404 individuals, which revealed a low level of genetic diversity (total genetic diversity = 0.240, and the average value of nucleotide diversity = 0.00024). In addition, a fairly low genetic differentiation [coefficients for genetic differentiation among populations (GST) = 0.099, number of substitution (NST) = 0.081] was found among the studied populations, and NST value was less than GST, which indicated that no significant phylogeographic structure existed in those populations. Furthermore, analysis of molecular variance revealed that great genetic variance (91%) came from individuals within the populations, which indicated that there was no clear genetic differentiation among populations. On the basis of these findings, a conservation plan was proposed to sample or preserve fewer populations but with more individuals from each population. conservation genetic differentiation orchid three parallel rivers region Plant culture Min Tang verfasserin aut Yufen Bi verfasserin aut Junbo Yang verfasserin aut In Journal of the American Society for Horticultural Science American Society for Horticultural Science (ASHS), 2020 146(2021), 6, Seite 424-434 (DE-627)325792151 (DE-600)2040057-3 23279788 nnns volume:146 year:2021 number:6 pages:424-434 https://doi.org/10.21273/JASHS05046-21 kostenfrei https://doaj.org/article/3bf7fbdd70144f2493e64241d87e3870 kostenfrei https://journals.ashs.org/jashs/view/journals/jashs/146/6/article-p424.xml kostenfrei https://doaj.org/toc/2327-9788 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 146 2021 6 424-434 |
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(DE-627)DOAJ018398235 (DE-599)DOAJ3bf7fbdd70144f2493e64241d87e3870 DE-627 ger DE-627 rakwb eng SB1-1110 Xiangli Ma verfasserin aut Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spacers (psbM-trnD, trnV-trnA, accD-psal, rrn23, trnk-rps16, and ycf1) were analyzed in 404 wild individuals from 28 populations in the three river area in Yunnan Province, China. The results showed that the six chloroplast DNA sequences were aligned with 61 polymorphic sites, including 50 indels and 11 haplotypes in 404 individuals, which revealed a low level of genetic diversity (total genetic diversity = 0.240, and the average value of nucleotide diversity = 0.00024). In addition, a fairly low genetic differentiation [coefficients for genetic differentiation among populations (GST) = 0.099, number of substitution (NST) = 0.081] was found among the studied populations, and NST value was less than GST, which indicated that no significant phylogeographic structure existed in those populations. Furthermore, analysis of molecular variance revealed that great genetic variance (91%) came from individuals within the populations, which indicated that there was no clear genetic differentiation among populations. On the basis of these findings, a conservation plan was proposed to sample or preserve fewer populations but with more individuals from each population. conservation genetic differentiation orchid three parallel rivers region Plant culture Min Tang verfasserin aut Yufen Bi verfasserin aut Junbo Yang verfasserin aut In Journal of the American Society for Horticultural Science American Society for Horticultural Science (ASHS), 2020 146(2021), 6, Seite 424-434 (DE-627)325792151 (DE-600)2040057-3 23279788 nnns volume:146 year:2021 number:6 pages:424-434 https://doi.org/10.21273/JASHS05046-21 kostenfrei https://doaj.org/article/3bf7fbdd70144f2493e64241d87e3870 kostenfrei https://journals.ashs.org/jashs/view/journals/jashs/146/6/article-p424.xml kostenfrei https://doaj.org/toc/2327-9788 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 146 2021 6 424-434 |
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SB1-1110 Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China conservation genetic differentiation orchid three parallel rivers region |
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Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China |
abstract |
Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spacers (psbM-trnD, trnV-trnA, accD-psal, rrn23, trnk-rps16, and ycf1) were analyzed in 404 wild individuals from 28 populations in the three river area in Yunnan Province, China. The results showed that the six chloroplast DNA sequences were aligned with 61 polymorphic sites, including 50 indels and 11 haplotypes in 404 individuals, which revealed a low level of genetic diversity (total genetic diversity = 0.240, and the average value of nucleotide diversity = 0.00024). In addition, a fairly low genetic differentiation [coefficients for genetic differentiation among populations (GST) = 0.099, number of substitution (NST) = 0.081] was found among the studied populations, and NST value was less than GST, which indicated that no significant phylogeographic structure existed in those populations. Furthermore, analysis of molecular variance revealed that great genetic variance (91%) came from individuals within the populations, which indicated that there was no clear genetic differentiation among populations. On the basis of these findings, a conservation plan was proposed to sample or preserve fewer populations but with more individuals from each population. |
abstractGer |
Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spacers (psbM-trnD, trnV-trnA, accD-psal, rrn23, trnk-rps16, and ycf1) were analyzed in 404 wild individuals from 28 populations in the three river area in Yunnan Province, China. The results showed that the six chloroplast DNA sequences were aligned with 61 polymorphic sites, including 50 indels and 11 haplotypes in 404 individuals, which revealed a low level of genetic diversity (total genetic diversity = 0.240, and the average value of nucleotide diversity = 0.00024). In addition, a fairly low genetic differentiation [coefficients for genetic differentiation among populations (GST) = 0.099, number of substitution (NST) = 0.081] was found among the studied populations, and NST value was less than GST, which indicated that no significant phylogeographic structure existed in those populations. Furthermore, analysis of molecular variance revealed that great genetic variance (91%) came from individuals within the populations, which indicated that there was no clear genetic differentiation among populations. On the basis of these findings, a conservation plan was proposed to sample or preserve fewer populations but with more individuals from each population. |
abstract_unstemmed |
Cymbidium tortisepalum is a primary orchid species in Yunnan Province, China, and has an extremely high ornamental and economic value. To reveal the levels and distribution of genetic variation and structure of wild C. tortisepalum resources, sequence variations of six chloroplast DNA intergenic spacers (psbM-trnD, trnV-trnA, accD-psal, rrn23, trnk-rps16, and ycf1) were analyzed in 404 wild individuals from 28 populations in the three river area in Yunnan Province, China. The results showed that the six chloroplast DNA sequences were aligned with 61 polymorphic sites, including 50 indels and 11 haplotypes in 404 individuals, which revealed a low level of genetic diversity (total genetic diversity = 0.240, and the average value of nucleotide diversity = 0.00024). In addition, a fairly low genetic differentiation [coefficients for genetic differentiation among populations (GST) = 0.099, number of substitution (NST) = 0.081] was found among the studied populations, and NST value was less than GST, which indicated that no significant phylogeographic structure existed in those populations. Furthermore, analysis of molecular variance revealed that great genetic variance (91%) came from individuals within the populations, which indicated that there was no clear genetic differentiation among populations. On the basis of these findings, a conservation plan was proposed to sample or preserve fewer populations but with more individuals from each population. |
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Genetic Diversity and Population Structure Analysis of Wild Cymbidium tortisepalum Based on Chloroplast DNA in Yunnan Province of China |
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