Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon
Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral),...
Ausführliche Beschreibung
Autor*in: |
Anna I Vickrey [verfasserIn] Rebecca Bruders [verfasserIn] Zev Kronenberg [verfasserIn] Emma Mackey [verfasserIn] Ryan J Bohlender [verfasserIn] Emily T Maclary [verfasserIn] Raquel Maynez [verfasserIn] Edward J Osborne [verfasserIn] Kevin P Johnson [verfasserIn] Chad D Huff [verfasserIn] Mark Yandell [verfasserIn] Michael D Shapiro [verfasserIn] |
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Format: |
E-Artikel |
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Sprache: |
Englisch |
Erschienen: |
2018 |
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Schlagwörter: |
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Übergeordnetes Werk: |
In: eLife - eLife Sciences Publications Ltd, 2013, 7(2018) |
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Übergeordnetes Werk: |
volume:7 ; year:2018 |
Links: |
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DOI / URN: |
10.7554/eLife.34803 |
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Katalog-ID: |
DOAJ021049394 |
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520 | |a Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. In summary, we find that both coding and regulatory variation in the same gene drives wing pattern diversity, and post-domestication introgression supplied potentially advantageous melanistic alleles to feral populations of this ubiquitous urban bird. | ||
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10.7554/eLife.34803 doi (DE-627)DOAJ021049394 (DE-599)DOAJ3d20fa45e26f4177ae484b3744fd14b1 DE-627 ger DE-627 rakwb eng QH301-705.5 Anna I Vickrey verfasserin aut Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. In summary, we find that both coding and regulatory variation in the same gene drives wing pattern diversity, and post-domestication introgression supplied potentially advantageous melanistic alleles to feral populations of this ubiquitous urban bird. Columba livia pigeon introgression NDP pigmentation Norrie disease Medicine R Science Q Biology (General) Rebecca Bruders verfasserin aut Zev Kronenberg verfasserin aut Emma Mackey verfasserin aut Ryan J Bohlender verfasserin aut Emily T Maclary verfasserin aut Raquel Maynez verfasserin aut Edward J Osborne verfasserin aut Kevin P Johnson verfasserin aut Chad D Huff verfasserin aut Mark Yandell verfasserin aut Michael D Shapiro verfasserin aut In eLife eLife Sciences Publications Ltd, 2013 7(2018) (DE-627)728518384 (DE-600)2687154-3 2050084X nnns volume:7 year:2018 https://doi.org/10.7554/eLife.34803 kostenfrei https://doaj.org/article/3d20fa45e26f4177ae484b3744fd14b1 kostenfrei https://elifesciences.org/articles/34803 kostenfrei https://doaj.org/toc/2050-084X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2018 |
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10.7554/eLife.34803 doi (DE-627)DOAJ021049394 (DE-599)DOAJ3d20fa45e26f4177ae484b3744fd14b1 DE-627 ger DE-627 rakwb eng QH301-705.5 Anna I Vickrey verfasserin aut Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. In summary, we find that both coding and regulatory variation in the same gene drives wing pattern diversity, and post-domestication introgression supplied potentially advantageous melanistic alleles to feral populations of this ubiquitous urban bird. Columba livia pigeon introgression NDP pigmentation Norrie disease Medicine R Science Q Biology (General) Rebecca Bruders verfasserin aut Zev Kronenberg verfasserin aut Emma Mackey verfasserin aut Ryan J Bohlender verfasserin aut Emily T Maclary verfasserin aut Raquel Maynez verfasserin aut Edward J Osborne verfasserin aut Kevin P Johnson verfasserin aut Chad D Huff verfasserin aut Mark Yandell verfasserin aut Michael D Shapiro verfasserin aut In eLife eLife Sciences Publications Ltd, 2013 7(2018) (DE-627)728518384 (DE-600)2687154-3 2050084X nnns volume:7 year:2018 https://doi.org/10.7554/eLife.34803 kostenfrei https://doaj.org/article/3d20fa45e26f4177ae484b3744fd14b1 kostenfrei https://elifesciences.org/articles/34803 kostenfrei https://doaj.org/toc/2050-084X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2018 |
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10.7554/eLife.34803 doi (DE-627)DOAJ021049394 (DE-599)DOAJ3d20fa45e26f4177ae484b3744fd14b1 DE-627 ger DE-627 rakwb eng QH301-705.5 Anna I Vickrey verfasserin aut Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. In summary, we find that both coding and regulatory variation in the same gene drives wing pattern diversity, and post-domestication introgression supplied potentially advantageous melanistic alleles to feral populations of this ubiquitous urban bird. Columba livia pigeon introgression NDP pigmentation Norrie disease Medicine R Science Q Biology (General) Rebecca Bruders verfasserin aut Zev Kronenberg verfasserin aut Emma Mackey verfasserin aut Ryan J Bohlender verfasserin aut Emily T Maclary verfasserin aut Raquel Maynez verfasserin aut Edward J Osborne verfasserin aut Kevin P Johnson verfasserin aut Chad D Huff verfasserin aut Mark Yandell verfasserin aut Michael D Shapiro verfasserin aut In eLife eLife Sciences Publications Ltd, 2013 7(2018) (DE-627)728518384 (DE-600)2687154-3 2050084X nnns volume:7 year:2018 https://doi.org/10.7554/eLife.34803 kostenfrei https://doaj.org/article/3d20fa45e26f4177ae484b3744fd14b1 kostenfrei https://elifesciences.org/articles/34803 kostenfrei https://doaj.org/toc/2050-084X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2018 |
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10.7554/eLife.34803 doi (DE-627)DOAJ021049394 (DE-599)DOAJ3d20fa45e26f4177ae484b3744fd14b1 DE-627 ger DE-627 rakwb eng QH301-705.5 Anna I Vickrey verfasserin aut Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. In summary, we find that both coding and regulatory variation in the same gene drives wing pattern diversity, and post-domestication introgression supplied potentially advantageous melanistic alleles to feral populations of this ubiquitous urban bird. Columba livia pigeon introgression NDP pigmentation Norrie disease Medicine R Science Q Biology (General) Rebecca Bruders verfasserin aut Zev Kronenberg verfasserin aut Emma Mackey verfasserin aut Ryan J Bohlender verfasserin aut Emily T Maclary verfasserin aut Raquel Maynez verfasserin aut Edward J Osborne verfasserin aut Kevin P Johnson verfasserin aut Chad D Huff verfasserin aut Mark Yandell verfasserin aut Michael D Shapiro verfasserin aut In eLife eLife Sciences Publications Ltd, 2013 7(2018) (DE-627)728518384 (DE-600)2687154-3 2050084X nnns volume:7 year:2018 https://doi.org/10.7554/eLife.34803 kostenfrei https://doaj.org/article/3d20fa45e26f4177ae484b3744fd14b1 kostenfrei https://elifesciences.org/articles/34803 kostenfrei https://doaj.org/toc/2050-084X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2018 |
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10.7554/eLife.34803 doi (DE-627)DOAJ021049394 (DE-599)DOAJ3d20fa45e26f4177ae484b3744fd14b1 DE-627 ger DE-627 rakwb eng QH301-705.5 Anna I Vickrey verfasserin aut Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. In summary, we find that both coding and regulatory variation in the same gene drives wing pattern diversity, and post-domestication introgression supplied potentially advantageous melanistic alleles to feral populations of this ubiquitous urban bird. Columba livia pigeon introgression NDP pigmentation Norrie disease Medicine R Science Q Biology (General) Rebecca Bruders verfasserin aut Zev Kronenberg verfasserin aut Emma Mackey verfasserin aut Ryan J Bohlender verfasserin aut Emily T Maclary verfasserin aut Raquel Maynez verfasserin aut Edward J Osborne verfasserin aut Kevin P Johnson verfasserin aut Chad D Huff verfasserin aut Mark Yandell verfasserin aut Michael D Shapiro verfasserin aut In eLife eLife Sciences Publications Ltd, 2013 7(2018) (DE-627)728518384 (DE-600)2687154-3 2050084X nnns volume:7 year:2018 https://doi.org/10.7554/eLife.34803 kostenfrei https://doaj.org/article/3d20fa45e26f4177ae484b3744fd14b1 kostenfrei https://elifesciences.org/articles/34803 kostenfrei https://doaj.org/toc/2050-084X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2018 |
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Anna I Vickrey misc QH301-705.5 misc Columba livia misc pigeon misc introgression misc NDP misc pigmentation misc Norrie disease misc Medicine misc R misc Science misc Q misc Biology (General) Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon |
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QH301-705.5 Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon Columba livia pigeon introgression NDP pigmentation Norrie disease |
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Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon |
abstract |
Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. In summary, we find that both coding and regulatory variation in the same gene drives wing pattern diversity, and post-domestication introgression supplied potentially advantageous melanistic alleles to feral populations of this ubiquitous urban bird. |
abstractGer |
Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. In summary, we find that both coding and regulatory variation in the same gene drives wing pattern diversity, and post-domestication introgression supplied potentially advantageous melanistic alleles to feral populations of this ubiquitous urban bird. |
abstract_unstemmed |
Birds and other vertebrates display stunning variation in pigmentation patterning, yet the genes controlling this diversity remain largely unknown. Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. In summary, we find that both coding and regulatory variation in the same gene drives wing pattern diversity, and post-domestication introgression supplied potentially advantageous melanistic alleles to feral populations of this ubiquitous urban bird. |
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Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon |
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Rock pigeons (Columba livia) are fundamentally one of four color pattern phenotypes, in decreasing order of melanism: T-check, checker, bar (ancestral), or barless. Using whole-genome scans, we identified NDP as a candidate gene for this variation. Allele-specific expression differences in NDP indicate cis-regulatory divergence between ancestral and melanistic alleles. Sequence comparisons suggest that derived alleles originated in the speckled pigeon (Columba guinea), providing a striking example of introgression. In contrast, barless rock pigeons have an increased incidence of vision defects and, like human families with hereditary blindness, carry start-codon mutations in NDP. 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