Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress

Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i...
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Autor*in:	Xiaojing Liu [verfasserIn] Yunshan Liu [verfasserIn] Shengkun Wang [verfasserIn] Fangcuo Qin [verfasserIn] Dongli Wang [verfasserIn] Yu Chen [verfasserIn] Lipan Hu [verfasserIn] Sen Meng [verfasserIn] Junkun Lu [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2022

Schlagwörter:	auxin response factors auxin qRT-PCR drought

Übergeordnetes Werk:	In: Forests - MDPI AG, 2010, 13(2022), 11, p 1934
Übergeordnetes Werk:	volume:13 ; year:2022 ; number:11, p 1934

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/f13111934

Katalog-ID:	DOAJ025793608

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520			\|a Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i<, apple (<i<Malus domestica</i<), poplar (<i<Populus trichocarpa</i<) and other plants with known whole genomes. However, <i<S. album</i< (<i<Santalum album</i< L.), has not been studied. In this study, we analyzed and screened the whole genome of <i<S. album</i< and obtained 18 <i<S. album ARF</i<s (<i<SaARF</i<s), which were distributed on eight chromosomes. Through the prediction of conserved domains, we found that 13 of the 18 SaARFs had three intact conserved domains, named DBD, MR, Phox and Bem1 (PB1), while the extra five SaARFs (SaARF3, SaARF10, SaARF12, SaARF15, SaARF17) had only two conserved domains, and the C-terminal PB1 domain was missing. By establishing a phylogenetic tree, 62 <i<ARF</i< genes in <i<S. album</i<, poplar and <i<Arabidopsis</i< were divided into four subgroups, named Ⅰ, Ⅱ, Ⅲ and Ⅳ. According to the results of collinearity analysis, we found that ten of the eighteen <i<ARF</i< genes were involved in five segmental duplication events and these genes had short distance intervals and high homology in the <i<SaARF</i< gene family. Finally, tissue-specific and drought-treatment expression of <i<SaARF</i< genes was observed by quantitative real-time polymerase chain reaction (qRT-PCR), and six genes were significantly overexpressed in haustorium. Meanwhile we found <i<SaARF5</i<, <i<SaARF10</i<, and <i<SaARF16</i< were significantly overexpressed under drought stress. These results provide a basis for further analysis of the related functions of the <i<S. album ARF</i< gene and its relationship with haustorium formation.
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allfields	10.3390/f13111934 doi (DE-627)DOAJ025793608 (DE-599)DOAJ62d263df26aa4154bcb72b130303cca9 DE-627 ger DE-627 rakwb eng QK900-989 Xiaojing Liu verfasserin aut Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i<, apple (<i<Malus domestica</i<), poplar (<i<Populus trichocarpa</i<) and other plants with known whole genomes. However, <i<S. album</i< (<i<Santalum album</i< L.), has not been studied. In this study, we analyzed and screened the whole genome of <i<S. album</i< and obtained 18 <i<S. album ARF</i<s (<i<SaARF</i<s), which were distributed on eight chromosomes. Through the prediction of conserved domains, we found that 13 of the 18 SaARFs had three intact conserved domains, named DBD, MR, Phox and Bem1 (PB1), while the extra five SaARFs (SaARF3, SaARF10, SaARF12, SaARF15, SaARF17) had only two conserved domains, and the C-terminal PB1 domain was missing. By establishing a phylogenetic tree, 62 <i<ARF</i< genes in <i<S. album</i<, poplar and <i<Arabidopsis</i< were divided into four subgroups, named Ⅰ, Ⅱ, Ⅲ and Ⅳ. According to the results of collinearity analysis, we found that ten of the eighteen <i<ARF</i< genes were involved in five segmental duplication events and these genes had short distance intervals and high homology in the <i<SaARF</i< gene family. Finally, tissue-specific and drought-treatment expression of <i<SaARF</i< genes was observed by quantitative real-time polymerase chain reaction (qRT-PCR), and six genes were significantly overexpressed in haustorium. Meanwhile we found <i<SaARF5</i<, <i<SaARF10</i<, and <i<SaARF16</i< were significantly overexpressed under drought stress. These results provide a basis for further analysis of the related functions of the <i<S. album ARF</i< gene and its relationship with haustorium formation. <i<Santalum album</i< L. auxin response factors auxin qRT-PCR drought Plant ecology Yunshan Liu verfasserin aut Shengkun Wang verfasserin aut Fangcuo Qin verfasserin aut Dongli Wang verfasserin aut Yu Chen verfasserin aut Lipan Hu verfasserin aut Sen Meng verfasserin aut Junkun Lu verfasserin aut In Forests MDPI AG, 2010 13(2022), 11, p 1934 (DE-627)614095689 (DE-600)2527081-3 19994907 nnns volume:13 year:2022 number:11, p 1934 https://doi.org/10.3390/f13111934 kostenfrei https://doaj.org/article/62d263df26aa4154bcb72b130303cca9 kostenfrei https://www.mdpi.com/1999-4907/13/11/1934 kostenfrei https://doaj.org/toc/1999-4907 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 13 2022 11, p 1934
spelling	10.3390/f13111934 doi (DE-627)DOAJ025793608 (DE-599)DOAJ62d263df26aa4154bcb72b130303cca9 DE-627 ger DE-627 rakwb eng QK900-989 Xiaojing Liu verfasserin aut Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i<, apple (<i<Malus domestica</i<), poplar (<i<Populus trichocarpa</i<) and other plants with known whole genomes. However, <i<S. album</i< (<i<Santalum album</i< L.), has not been studied. In this study, we analyzed and screened the whole genome of <i<S. album</i< and obtained 18 <i<S. album ARF</i<s (<i<SaARF</i<s), which were distributed on eight chromosomes. Through the prediction of conserved domains, we found that 13 of the 18 SaARFs had three intact conserved domains, named DBD, MR, Phox and Bem1 (PB1), while the extra five SaARFs (SaARF3, SaARF10, SaARF12, SaARF15, SaARF17) had only two conserved domains, and the C-terminal PB1 domain was missing. By establishing a phylogenetic tree, 62 <i<ARF</i< genes in <i<S. album</i<, poplar and <i<Arabidopsis</i< were divided into four subgroups, named Ⅰ, Ⅱ, Ⅲ and Ⅳ. According to the results of collinearity analysis, we found that ten of the eighteen <i<ARF</i< genes were involved in five segmental duplication events and these genes had short distance intervals and high homology in the <i<SaARF</i< gene family. Finally, tissue-specific and drought-treatment expression of <i<SaARF</i< genes was observed by quantitative real-time polymerase chain reaction (qRT-PCR), and six genes were significantly overexpressed in haustorium. Meanwhile we found <i<SaARF5</i<, <i<SaARF10</i<, and <i<SaARF16</i< were significantly overexpressed under drought stress. These results provide a basis for further analysis of the related functions of the <i<S. album ARF</i< gene and its relationship with haustorium formation. <i<Santalum album</i< L. auxin response factors auxin qRT-PCR drought Plant ecology Yunshan Liu verfasserin aut Shengkun Wang verfasserin aut Fangcuo Qin verfasserin aut Dongli Wang verfasserin aut Yu Chen verfasserin aut Lipan Hu verfasserin aut Sen Meng verfasserin aut Junkun Lu verfasserin aut In Forests MDPI AG, 2010 13(2022), 11, p 1934 (DE-627)614095689 (DE-600)2527081-3 19994907 nnns volume:13 year:2022 number:11, p 1934 https://doi.org/10.3390/f13111934 kostenfrei https://doaj.org/article/62d263df26aa4154bcb72b130303cca9 kostenfrei https://www.mdpi.com/1999-4907/13/11/1934 kostenfrei https://doaj.org/toc/1999-4907 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 13 2022 11, p 1934
allfields_unstemmed	10.3390/f13111934 doi (DE-627)DOAJ025793608 (DE-599)DOAJ62d263df26aa4154bcb72b130303cca9 DE-627 ger DE-627 rakwb eng QK900-989 Xiaojing Liu verfasserin aut Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i<, apple (<i<Malus domestica</i<), poplar (<i<Populus trichocarpa</i<) and other plants with known whole genomes. However, <i<S. album</i< (<i<Santalum album</i< L.), has not been studied. In this study, we analyzed and screened the whole genome of <i<S. album</i< and obtained 18 <i<S. album ARF</i<s (<i<SaARF</i<s), which were distributed on eight chromosomes. Through the prediction of conserved domains, we found that 13 of the 18 SaARFs had three intact conserved domains, named DBD, MR, Phox and Bem1 (PB1), while the extra five SaARFs (SaARF3, SaARF10, SaARF12, SaARF15, SaARF17) had only two conserved domains, and the C-terminal PB1 domain was missing. By establishing a phylogenetic tree, 62 <i<ARF</i< genes in <i<S. album</i<, poplar and <i<Arabidopsis</i< were divided into four subgroups, named Ⅰ, Ⅱ, Ⅲ and Ⅳ. According to the results of collinearity analysis, we found that ten of the eighteen <i<ARF</i< genes were involved in five segmental duplication events and these genes had short distance intervals and high homology in the <i<SaARF</i< gene family. Finally, tissue-specific and drought-treatment expression of <i<SaARF</i< genes was observed by quantitative real-time polymerase chain reaction (qRT-PCR), and six genes were significantly overexpressed in haustorium. Meanwhile we found <i<SaARF5</i<, <i<SaARF10</i<, and <i<SaARF16</i< were significantly overexpressed under drought stress. These results provide a basis for further analysis of the related functions of the <i<S. album ARF</i< gene and its relationship with haustorium formation. <i<Santalum album</i< L. auxin response factors auxin qRT-PCR drought Plant ecology Yunshan Liu verfasserin aut Shengkun Wang verfasserin aut Fangcuo Qin verfasserin aut Dongli Wang verfasserin aut Yu Chen verfasserin aut Lipan Hu verfasserin aut Sen Meng verfasserin aut Junkun Lu verfasserin aut In Forests MDPI AG, 2010 13(2022), 11, p 1934 (DE-627)614095689 (DE-600)2527081-3 19994907 nnns volume:13 year:2022 number:11, p 1934 https://doi.org/10.3390/f13111934 kostenfrei https://doaj.org/article/62d263df26aa4154bcb72b130303cca9 kostenfrei https://www.mdpi.com/1999-4907/13/11/1934 kostenfrei https://doaj.org/toc/1999-4907 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 13 2022 11, p 1934
allfieldsGer	10.3390/f13111934 doi (DE-627)DOAJ025793608 (DE-599)DOAJ62d263df26aa4154bcb72b130303cca9 DE-627 ger DE-627 rakwb eng QK900-989 Xiaojing Liu verfasserin aut Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i<, apple (<i<Malus domestica</i<), poplar (<i<Populus trichocarpa</i<) and other plants with known whole genomes. However, <i<S. album</i< (<i<Santalum album</i< L.), has not been studied. In this study, we analyzed and screened the whole genome of <i<S. album</i< and obtained 18 <i<S. album ARF</i<s (<i<SaARF</i<s), which were distributed on eight chromosomes. Through the prediction of conserved domains, we found that 13 of the 18 SaARFs had three intact conserved domains, named DBD, MR, Phox and Bem1 (PB1), while the extra five SaARFs (SaARF3, SaARF10, SaARF12, SaARF15, SaARF17) had only two conserved domains, and the C-terminal PB1 domain was missing. By establishing a phylogenetic tree, 62 <i<ARF</i< genes in <i<S. album</i<, poplar and <i<Arabidopsis</i< were divided into four subgroups, named Ⅰ, Ⅱ, Ⅲ and Ⅳ. According to the results of collinearity analysis, we found that ten of the eighteen <i<ARF</i< genes were involved in five segmental duplication events and these genes had short distance intervals and high homology in the <i<SaARF</i< gene family. Finally, tissue-specific and drought-treatment expression of <i<SaARF</i< genes was observed by quantitative real-time polymerase chain reaction (qRT-PCR), and six genes were significantly overexpressed in haustorium. Meanwhile we found <i<SaARF5</i<, <i<SaARF10</i<, and <i<SaARF16</i< were significantly overexpressed under drought stress. These results provide a basis for further analysis of the related functions of the <i<S. album ARF</i< gene and its relationship with haustorium formation. <i<Santalum album</i< L. auxin response factors auxin qRT-PCR drought Plant ecology Yunshan Liu verfasserin aut Shengkun Wang verfasserin aut Fangcuo Qin verfasserin aut Dongli Wang verfasserin aut Yu Chen verfasserin aut Lipan Hu verfasserin aut Sen Meng verfasserin aut Junkun Lu verfasserin aut In Forests MDPI AG, 2010 13(2022), 11, p 1934 (DE-627)614095689 (DE-600)2527081-3 19994907 nnns volume:13 year:2022 number:11, p 1934 https://doi.org/10.3390/f13111934 kostenfrei https://doaj.org/article/62d263df26aa4154bcb72b130303cca9 kostenfrei https://www.mdpi.com/1999-4907/13/11/1934 kostenfrei https://doaj.org/toc/1999-4907 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 13 2022 11, p 1934
allfieldsSound	10.3390/f13111934 doi (DE-627)DOAJ025793608 (DE-599)DOAJ62d263df26aa4154bcb72b130303cca9 DE-627 ger DE-627 rakwb eng QK900-989 Xiaojing Liu verfasserin aut Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i<, apple (<i<Malus domestica</i<), poplar (<i<Populus trichocarpa</i<) and other plants with known whole genomes. However, <i<S. album</i< (<i<Santalum album</i< L.), has not been studied. In this study, we analyzed and screened the whole genome of <i<S. album</i< and obtained 18 <i<S. album ARF</i<s (<i<SaARF</i<s), which were distributed on eight chromosomes. Through the prediction of conserved domains, we found that 13 of the 18 SaARFs had three intact conserved domains, named DBD, MR, Phox and Bem1 (PB1), while the extra five SaARFs (SaARF3, SaARF10, SaARF12, SaARF15, SaARF17) had only two conserved domains, and the C-terminal PB1 domain was missing. By establishing a phylogenetic tree, 62 <i<ARF</i< genes in <i<S. album</i<, poplar and <i<Arabidopsis</i< were divided into four subgroups, named Ⅰ, Ⅱ, Ⅲ and Ⅳ. According to the results of collinearity analysis, we found that ten of the eighteen <i<ARF</i< genes were involved in five segmental duplication events and these genes had short distance intervals and high homology in the <i<SaARF</i< gene family. Finally, tissue-specific and drought-treatment expression of <i<SaARF</i< genes was observed by quantitative real-time polymerase chain reaction (qRT-PCR), and six genes were significantly overexpressed in haustorium. Meanwhile we found <i<SaARF5</i<, <i<SaARF10</i<, and <i<SaARF16</i< were significantly overexpressed under drought stress. These results provide a basis for further analysis of the related functions of the <i<S. album ARF</i< gene and its relationship with haustorium formation. <i<Santalum album</i< L. auxin response factors auxin qRT-PCR drought Plant ecology Yunshan Liu verfasserin aut Shengkun Wang verfasserin aut Fangcuo Qin verfasserin aut Dongli Wang verfasserin aut Yu Chen verfasserin aut Lipan Hu verfasserin aut Sen Meng verfasserin aut Junkun Lu verfasserin aut In Forests MDPI AG, 2010 13(2022), 11, p 1934 (DE-627)614095689 (DE-600)2527081-3 19994907 nnns volume:13 year:2022 number:11, p 1934 https://doi.org/10.3390/f13111934 kostenfrei https://doaj.org/article/62d263df26aa4154bcb72b130303cca9 kostenfrei https://www.mdpi.com/1999-4907/13/11/1934 kostenfrei https://doaj.org/toc/1999-4907 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 13 2022 11, p 1934
language	English
source	In Forests 13(2022), 11, p 1934 volume:13 year:2022 number:11, p 1934
sourceStr	In Forests 13(2022), 11, p 1934 volume:13 year:2022 number:11, p 1934
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	<i<Santalum album</i< L. auxin response factors auxin qRT-PCR drought Plant ecology
isfreeaccess_bool	true
container_title	Forests
authorswithroles_txt_mv	Xiaojing Liu @@aut@@ Yunshan Liu @@aut@@ Shengkun Wang @@aut@@ Fangcuo Qin @@aut@@ Dongli Wang @@aut@@ Yu Chen @@aut@@ Lipan Hu @@aut@@ Sen Meng @@aut@@ Junkun Lu @@aut@@
publishDateDaySort_date	2022-01-01T00:00:00Z
hierarchy_top_id	614095689
id	DOAJ025793608
language_de	englisch
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callnumber-first	Q - Science
author	Xiaojing Liu
spellingShingle	Xiaojing Liu misc QK900-989 misc <i<Santalum album</i< L. misc auxin response factors misc auxin misc qRT-PCR misc drought misc Plant ecology Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress
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topic_title	QK900-989 Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress <i<Santalum album</i< L. auxin response factors auxin qRT-PCR drought
topic	misc QK900-989 misc <i<Santalum album</i< L. misc auxin response factors misc auxin misc qRT-PCR misc drought misc Plant ecology
topic_unstemmed	misc QK900-989 misc <i<Santalum album</i< L. misc auxin response factors misc auxin misc qRT-PCR misc drought misc Plant ecology
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title	Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress
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title_full	Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress
author_sort	Xiaojing Liu
journal	Forests
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author_browse	Xiaojing Liu Yunshan Liu Shengkun Wang Fangcuo Qin Dongli Wang Yu Chen Lipan Hu Sen Meng Junkun Lu
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author-letter	Xiaojing Liu
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title_sort	complete genome expression analysis of the auxin response factor gene family in sandalwood and their potential roles in drought stress
callnumber	QK900-989
title_auth	Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress
abstract	Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i<, apple (<i<Malus domestica</i<), poplar (<i<Populus trichocarpa</i<) and other plants with known whole genomes. However, <i<S. album</i< (<i<Santalum album</i< L.), has not been studied. In this study, we analyzed and screened the whole genome of <i<S. album</i< and obtained 18 <i<S. album ARF</i<s (<i<SaARF</i<s), which were distributed on eight chromosomes. Through the prediction of conserved domains, we found that 13 of the 18 SaARFs had three intact conserved domains, named DBD, MR, Phox and Bem1 (PB1), while the extra five SaARFs (SaARF3, SaARF10, SaARF12, SaARF15, SaARF17) had only two conserved domains, and the C-terminal PB1 domain was missing. By establishing a phylogenetic tree, 62 <i<ARF</i< genes in <i<S. album</i<, poplar and <i<Arabidopsis</i< were divided into four subgroups, named Ⅰ, Ⅱ, Ⅲ and Ⅳ. According to the results of collinearity analysis, we found that ten of the eighteen <i<ARF</i< genes were involved in five segmental duplication events and these genes had short distance intervals and high homology in the <i<SaARF</i< gene family. Finally, tissue-specific and drought-treatment expression of <i<SaARF</i< genes was observed by quantitative real-time polymerase chain reaction (qRT-PCR), and six genes were significantly overexpressed in haustorium. Meanwhile we found <i<SaARF5</i<, <i<SaARF10</i<, and <i<SaARF16</i< were significantly overexpressed under drought stress. These results provide a basis for further analysis of the related functions of the <i<S. album ARF</i< gene and its relationship with haustorium formation.
abstractGer	Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i<, apple (<i<Malus domestica</i<), poplar (<i<Populus trichocarpa</i<) and other plants with known whole genomes. However, <i<S. album</i< (<i<Santalum album</i< L.), has not been studied. In this study, we analyzed and screened the whole genome of <i<S. album</i< and obtained 18 <i<S. album ARF</i<s (<i<SaARF</i<s), which were distributed on eight chromosomes. Through the prediction of conserved domains, we found that 13 of the 18 SaARFs had three intact conserved domains, named DBD, MR, Phox and Bem1 (PB1), while the extra five SaARFs (SaARF3, SaARF10, SaARF12, SaARF15, SaARF17) had only two conserved domains, and the C-terminal PB1 domain was missing. By establishing a phylogenetic tree, 62 <i<ARF</i< genes in <i<S. album</i<, poplar and <i<Arabidopsis</i< were divided into four subgroups, named Ⅰ, Ⅱ, Ⅲ and Ⅳ. According to the results of collinearity analysis, we found that ten of the eighteen <i<ARF</i< genes were involved in five segmental duplication events and these genes had short distance intervals and high homology in the <i<SaARF</i< gene family. Finally, tissue-specific and drought-treatment expression of <i<SaARF</i< genes was observed by quantitative real-time polymerase chain reaction (qRT-PCR), and six genes were significantly overexpressed in haustorium. Meanwhile we found <i<SaARF5</i<, <i<SaARF10</i<, and <i<SaARF16</i< were significantly overexpressed under drought stress. These results provide a basis for further analysis of the related functions of the <i<S. album ARF</i< gene and its relationship with haustorium formation.
abstract_unstemmed	Auxin response factors (ARFs) are essential transcription factors in plants that play an irreplaceable role in controlling the expression of auxin response genes and participating in plant growth and stress. The <i<ARF</i< gene family has been found in <i<Arabidopsis thaliana</i<, apple (<i<Malus domestica</i<), poplar (<i<Populus trichocarpa</i<) and other plants with known whole genomes. However, <i<S. album</i< (<i<Santalum album</i< L.), has not been studied. In this study, we analyzed and screened the whole genome of <i<S. album</i< and obtained 18 <i<S. album ARF</i<s (<i<SaARF</i<s), which were distributed on eight chromosomes. Through the prediction of conserved domains, we found that 13 of the 18 SaARFs had three intact conserved domains, named DBD, MR, Phox and Bem1 (PB1), while the extra five SaARFs (SaARF3, SaARF10, SaARF12, SaARF15, SaARF17) had only two conserved domains, and the C-terminal PB1 domain was missing. By establishing a phylogenetic tree, 62 <i<ARF</i< genes in <i<S. album</i<, poplar and <i<Arabidopsis</i< were divided into four subgroups, named Ⅰ, Ⅱ, Ⅲ and Ⅳ. According to the results of collinearity analysis, we found that ten of the eighteen <i<ARF</i< genes were involved in five segmental duplication events and these genes had short distance intervals and high homology in the <i<SaARF</i< gene family. Finally, tissue-specific and drought-treatment expression of <i<SaARF</i< genes was observed by quantitative real-time polymerase chain reaction (qRT-PCR), and six genes were significantly overexpressed in haustorium. Meanwhile we found <i<SaARF5</i<, <i<SaARF10</i<, and <i<SaARF16</i< were significantly overexpressed under drought stress. These results provide a basis for further analysis of the related functions of the <i<S. album ARF</i< gene and its relationship with haustorium formation.
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container_issue	11, p 1934
title_short	Complete Genome Expression Analysis of the Auxin Response Factor Gene Family in Sandalwood and Their Potential Roles in Drought Stress
url	https://doi.org/10.3390/f13111934 https://doaj.org/article/62d263df26aa4154bcb72b130303cca9 https://www.mdpi.com/1999-4907/13/11/1934 https://doaj.org/toc/1999-4907
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