Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i<

Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae wi...
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Autor*in:	Jianhang Zhang [verfasserIn] Jiecheng Li [verfasserIn] Lu Zou [verfasserIn] Hongqing Li [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2022

Schlagwörter:	transcriptome air space-type variegation leaf variegation variegated leaf plants

Übergeordnetes Werk:	In: International Journal of Molecular Sciences - MDPI AG, 2003, 23(2022), 14, p 7794
Übergeordnetes Werk:	volume:23 ; year:2022 ; number:14, p 7794

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc Journal toc

DOI / URN:	10.3390/ijms23147794

Katalog-ID:	DOAJ026228165

Internformat


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520			\|a Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae with V-shaped air space-type variegation, was selected to explore the application potential of variegated leaf plants and accumulate basic data on the molecular regulatory mechanism and evolutionary history of leaf variegation. We performed comparative transcriptome analysis on young and adult leaflets of variegated and green plants and identified 43 candidate genes related to air space-type variegation formation. Most of the genes were related to cell-wall structure modification (<i<CESA</i<, <i<CSL</i<, <i<EXP</i<, <i<FLA</i<, <i<PG</i<, <i<PGIP</i<, <i<PLL</i<, <i<PME</i<, <i<RGP</i<, <i<SKS</i<, and <i<XTH</i< family genes), followed by photosynthesis (<i<LHCB</i< subfamily, <i<RBCS</i<, <i<GOX</i<, and <i<AGT</i< family genes), redox (<i<2OG</i< and <i<GSH</i< family genes), and nitrogen metabolism (<i<NodGS</i< family genes). Other genes were related to photooxidation, protein interaction, and protease degradation systems. The downregulated expression of light-responsive <i<LHCB</i< subfamily genes and the upregulated expression of the genes involved in cell-wall structure modification were important conditions for air space-type variegation formation in <i<T. pratense</i<. The upregulated expression of the ubiquitin-protein ligase enzyme (E3)-related genes in the protease degradation systems were conducive to air space-type variegation formation. Because these family genes are necessary for plant growth and development, the mechanism of the leaf variegation formation in <i<T. pratense</i< might be a widely existing regulation in air space-type variegation in nature.
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allfields	10.3390/ijms23147794 doi (DE-627)DOAJ026228165 (DE-599)DOAJb297794605c44170a0a751214c43c762 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Jianhang Zhang verfasserin aut Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i< 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae with V-shaped air space-type variegation, was selected to explore the application potential of variegated leaf plants and accumulate basic data on the molecular regulatory mechanism and evolutionary history of leaf variegation. We performed comparative transcriptome analysis on young and adult leaflets of variegated and green plants and identified 43 candidate genes related to air space-type variegation formation. Most of the genes were related to cell-wall structure modification (<i<CESA</i<, <i<CSL</i<, <i<EXP</i<, <i<FLA</i<, <i<PG</i<, <i<PGIP</i<, <i<PLL</i<, <i<PME</i<, <i<RGP</i<, <i<SKS</i<, and <i<XTH</i< family genes), followed by photosynthesis (<i<LHCB</i< subfamily, <i<RBCS</i<, <i<GOX</i<, and <i<AGT</i< family genes), redox (<i<2OG</i< and <i<GSH</i< family genes), and nitrogen metabolism (<i<NodGS</i< family genes). Other genes were related to photooxidation, protein interaction, and protease degradation systems. The downregulated expression of light-responsive <i<LHCB</i< subfamily genes and the upregulated expression of the genes involved in cell-wall structure modification were important conditions for air space-type variegation formation in <i<T. pratense</i<. The upregulated expression of the ubiquitin-protein ligase enzyme (E3)-related genes in the protease degradation systems were conducive to air space-type variegation formation. Because these family genes are necessary for plant growth and development, the mechanism of the leaf variegation formation in <i<T. pratense</i< might be a widely existing regulation in air space-type variegation in nature. <i<Trifolium pratense</i< transcriptome air space-type variegation leaf variegation variegated leaf plants Biology (General) Chemistry Jiecheng Li verfasserin aut Lu Zou verfasserin aut Hongqing Li verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 23(2022), 14, p 7794 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:23 year:2022 number:14, p 7794 https://doi.org/10.3390/ijms23147794 kostenfrei https://doaj.org/article/b297794605c44170a0a751214c43c762 kostenfrei https://www.mdpi.com/1422-0067/23/14/7794 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 23 2022 14, p 7794
spelling	10.3390/ijms23147794 doi (DE-627)DOAJ026228165 (DE-599)DOAJb297794605c44170a0a751214c43c762 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Jianhang Zhang verfasserin aut Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i< 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae with V-shaped air space-type variegation, was selected to explore the application potential of variegated leaf plants and accumulate basic data on the molecular regulatory mechanism and evolutionary history of leaf variegation. We performed comparative transcriptome analysis on young and adult leaflets of variegated and green plants and identified 43 candidate genes related to air space-type variegation formation. Most of the genes were related to cell-wall structure modification (<i<CESA</i<, <i<CSL</i<, <i<EXP</i<, <i<FLA</i<, <i<PG</i<, <i<PGIP</i<, <i<PLL</i<, <i<PME</i<, <i<RGP</i<, <i<SKS</i<, and <i<XTH</i< family genes), followed by photosynthesis (<i<LHCB</i< subfamily, <i<RBCS</i<, <i<GOX</i<, and <i<AGT</i< family genes), redox (<i<2OG</i< and <i<GSH</i< family genes), and nitrogen metabolism (<i<NodGS</i< family genes). Other genes were related to photooxidation, protein interaction, and protease degradation systems. The downregulated expression of light-responsive <i<LHCB</i< subfamily genes and the upregulated expression of the genes involved in cell-wall structure modification were important conditions for air space-type variegation formation in <i<T. pratense</i<. The upregulated expression of the ubiquitin-protein ligase enzyme (E3)-related genes in the protease degradation systems were conducive to air space-type variegation formation. Because these family genes are necessary for plant growth and development, the mechanism of the leaf variegation formation in <i<T. pratense</i< might be a widely existing regulation in air space-type variegation in nature. <i<Trifolium pratense</i< transcriptome air space-type variegation leaf variegation variegated leaf plants Biology (General) Chemistry Jiecheng Li verfasserin aut Lu Zou verfasserin aut Hongqing Li verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 23(2022), 14, p 7794 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:23 year:2022 number:14, p 7794 https://doi.org/10.3390/ijms23147794 kostenfrei https://doaj.org/article/b297794605c44170a0a751214c43c762 kostenfrei https://www.mdpi.com/1422-0067/23/14/7794 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 23 2022 14, p 7794
allfields_unstemmed	10.3390/ijms23147794 doi (DE-627)DOAJ026228165 (DE-599)DOAJb297794605c44170a0a751214c43c762 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Jianhang Zhang verfasserin aut Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i< 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae with V-shaped air space-type variegation, was selected to explore the application potential of variegated leaf plants and accumulate basic data on the molecular regulatory mechanism and evolutionary history of leaf variegation. We performed comparative transcriptome analysis on young and adult leaflets of variegated and green plants and identified 43 candidate genes related to air space-type variegation formation. Most of the genes were related to cell-wall structure modification (<i<CESA</i<, <i<CSL</i<, <i<EXP</i<, <i<FLA</i<, <i<PG</i<, <i<PGIP</i<, <i<PLL</i<, <i<PME</i<, <i<RGP</i<, <i<SKS</i<, and <i<XTH</i< family genes), followed by photosynthesis (<i<LHCB</i< subfamily, <i<RBCS</i<, <i<GOX</i<, and <i<AGT</i< family genes), redox (<i<2OG</i< and <i<GSH</i< family genes), and nitrogen metabolism (<i<NodGS</i< family genes). Other genes were related to photooxidation, protein interaction, and protease degradation systems. The downregulated expression of light-responsive <i<LHCB</i< subfamily genes and the upregulated expression of the genes involved in cell-wall structure modification were important conditions for air space-type variegation formation in <i<T. pratense</i<. The upregulated expression of the ubiquitin-protein ligase enzyme (E3)-related genes in the protease degradation systems were conducive to air space-type variegation formation. Because these family genes are necessary for plant growth and development, the mechanism of the leaf variegation formation in <i<T. pratense</i< might be a widely existing regulation in air space-type variegation in nature. <i<Trifolium pratense</i< transcriptome air space-type variegation leaf variegation variegated leaf plants Biology (General) Chemistry Jiecheng Li verfasserin aut Lu Zou verfasserin aut Hongqing Li verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 23(2022), 14, p 7794 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:23 year:2022 number:14, p 7794 https://doi.org/10.3390/ijms23147794 kostenfrei https://doaj.org/article/b297794605c44170a0a751214c43c762 kostenfrei https://www.mdpi.com/1422-0067/23/14/7794 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 23 2022 14, p 7794
allfieldsGer	10.3390/ijms23147794 doi (DE-627)DOAJ026228165 (DE-599)DOAJb297794605c44170a0a751214c43c762 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Jianhang Zhang verfasserin aut Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i< 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae with V-shaped air space-type variegation, was selected to explore the application potential of variegated leaf plants and accumulate basic data on the molecular regulatory mechanism and evolutionary history of leaf variegation. We performed comparative transcriptome analysis on young and adult leaflets of variegated and green plants and identified 43 candidate genes related to air space-type variegation formation. Most of the genes were related to cell-wall structure modification (<i<CESA</i<, <i<CSL</i<, <i<EXP</i<, <i<FLA</i<, <i<PG</i<, <i<PGIP</i<, <i<PLL</i<, <i<PME</i<, <i<RGP</i<, <i<SKS</i<, and <i<XTH</i< family genes), followed by photosynthesis (<i<LHCB</i< subfamily, <i<RBCS</i<, <i<GOX</i<, and <i<AGT</i< family genes), redox (<i<2OG</i< and <i<GSH</i< family genes), and nitrogen metabolism (<i<NodGS</i< family genes). Other genes were related to photooxidation, protein interaction, and protease degradation systems. The downregulated expression of light-responsive <i<LHCB</i< subfamily genes and the upregulated expression of the genes involved in cell-wall structure modification were important conditions for air space-type variegation formation in <i<T. pratense</i<. The upregulated expression of the ubiquitin-protein ligase enzyme (E3)-related genes in the protease degradation systems were conducive to air space-type variegation formation. Because these family genes are necessary for plant growth and development, the mechanism of the leaf variegation formation in <i<T. pratense</i< might be a widely existing regulation in air space-type variegation in nature. <i<Trifolium pratense</i< transcriptome air space-type variegation leaf variegation variegated leaf plants Biology (General) Chemistry Jiecheng Li verfasserin aut Lu Zou verfasserin aut Hongqing Li verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 23(2022), 14, p 7794 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:23 year:2022 number:14, p 7794 https://doi.org/10.3390/ijms23147794 kostenfrei https://doaj.org/article/b297794605c44170a0a751214c43c762 kostenfrei https://www.mdpi.com/1422-0067/23/14/7794 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 23 2022 14, p 7794
allfieldsSound	10.3390/ijms23147794 doi (DE-627)DOAJ026228165 (DE-599)DOAJb297794605c44170a0a751214c43c762 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Jianhang Zhang verfasserin aut Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i< 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae with V-shaped air space-type variegation, was selected to explore the application potential of variegated leaf plants and accumulate basic data on the molecular regulatory mechanism and evolutionary history of leaf variegation. We performed comparative transcriptome analysis on young and adult leaflets of variegated and green plants and identified 43 candidate genes related to air space-type variegation formation. Most of the genes were related to cell-wall structure modification (<i<CESA</i<, <i<CSL</i<, <i<EXP</i<, <i<FLA</i<, <i<PG</i<, <i<PGIP</i<, <i<PLL</i<, <i<PME</i<, <i<RGP</i<, <i<SKS</i<, and <i<XTH</i< family genes), followed by photosynthesis (<i<LHCB</i< subfamily, <i<RBCS</i<, <i<GOX</i<, and <i<AGT</i< family genes), redox (<i<2OG</i< and <i<GSH</i< family genes), and nitrogen metabolism (<i<NodGS</i< family genes). Other genes were related to photooxidation, protein interaction, and protease degradation systems. The downregulated expression of light-responsive <i<LHCB</i< subfamily genes and the upregulated expression of the genes involved in cell-wall structure modification were important conditions for air space-type variegation formation in <i<T. pratense</i<. The upregulated expression of the ubiquitin-protein ligase enzyme (E3)-related genes in the protease degradation systems were conducive to air space-type variegation formation. Because these family genes are necessary for plant growth and development, the mechanism of the leaf variegation formation in <i<T. pratense</i< might be a widely existing regulation in air space-type variegation in nature. <i<Trifolium pratense</i< transcriptome air space-type variegation leaf variegation variegated leaf plants Biology (General) Chemistry Jiecheng Li verfasserin aut Lu Zou verfasserin aut Hongqing Li verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 23(2022), 14, p 7794 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:23 year:2022 number:14, p 7794 https://doi.org/10.3390/ijms23147794 kostenfrei https://doaj.org/article/b297794605c44170a0a751214c43c762 kostenfrei https://www.mdpi.com/1422-0067/23/14/7794 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 23 2022 14, p 7794
language	English
source	In International Journal of Molecular Sciences 23(2022), 14, p 7794 volume:23 year:2022 number:14, p 7794
sourceStr	In International Journal of Molecular Sciences 23(2022), 14, p 7794 volume:23 year:2022 number:14, p 7794
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	<i<Trifolium pratense</i< transcriptome air space-type variegation leaf variegation variegated leaf plants Biology (General) Chemistry
isfreeaccess_bool	true
container_title	International Journal of Molecular Sciences
authorswithroles_txt_mv	Jianhang Zhang @@aut@@ Jiecheng Li @@aut@@ Lu Zou @@aut@@ Hongqing Li @@aut@@
publishDateDaySort_date	2022-01-01T00:00:00Z
hierarchy_top_id	316340715
id	DOAJ026228165
language_de	englisch
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callnumber-first	Q - Science
author	Jianhang Zhang
spellingShingle	Jianhang Zhang misc QH301-705.5 misc QD1-999 misc <i<Trifolium pratense</i< misc transcriptome misc air space-type variegation misc leaf variegation misc variegated leaf plants misc Biology (General) misc Chemistry Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i<
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topic_title	QH301-705.5 QD1-999 Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i< <i<Trifolium pratense</i< transcriptome air space-type variegation leaf variegation variegated leaf plants
topic	misc QH301-705.5 misc QD1-999 misc <i<Trifolium pratense</i< misc transcriptome misc air space-type variegation misc leaf variegation misc variegated leaf plants misc Biology (General) misc Chemistry
topic_unstemmed	misc QH301-705.5 misc QD1-999 misc <i<Trifolium pratense</i< misc transcriptome misc air space-type variegation misc leaf variegation misc variegated leaf plants misc Biology (General) misc Chemistry
topic_browse	misc QH301-705.5 misc QD1-999 misc <i<Trifolium pratense</i< misc transcriptome misc air space-type variegation misc leaf variegation misc variegated leaf plants misc Biology (General) misc Chemistry
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title	Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i<
ctrlnum	(DE-627)DOAJ026228165 (DE-599)DOAJb297794605c44170a0a751214c43c762
title_full	Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i<
author_sort	Jianhang Zhang
journal	International Journal of Molecular Sciences
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author_browse	Jianhang Zhang Jiecheng Li Lu Zou Hongqing Li
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author-letter	Jianhang Zhang
doi_str_mv	10.3390/ijms23147794
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title_sort	transcriptome analysis of air space-type variegation formation in <i<trifolium pratense</i<
callnumber	QH301-705.5
title_auth	Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i<
abstract	Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae with V-shaped air space-type variegation, was selected to explore the application potential of variegated leaf plants and accumulate basic data on the molecular regulatory mechanism and evolutionary history of leaf variegation. We performed comparative transcriptome analysis on young and adult leaflets of variegated and green plants and identified 43 candidate genes related to air space-type variegation formation. Most of the genes were related to cell-wall structure modification (<i<CESA</i<, <i<CSL</i<, <i<EXP</i<, <i<FLA</i<, <i<PG</i<, <i<PGIP</i<, <i<PLL</i<, <i<PME</i<, <i<RGP</i<, <i<SKS</i<, and <i<XTH</i< family genes), followed by photosynthesis (<i<LHCB</i< subfamily, <i<RBCS</i<, <i<GOX</i<, and <i<AGT</i< family genes), redox (<i<2OG</i< and <i<GSH</i< family genes), and nitrogen metabolism (<i<NodGS</i< family genes). Other genes were related to photooxidation, protein interaction, and protease degradation systems. The downregulated expression of light-responsive <i<LHCB</i< subfamily genes and the upregulated expression of the genes involved in cell-wall structure modification were important conditions for air space-type variegation formation in <i<T. pratense</i<. The upregulated expression of the ubiquitin-protein ligase enzyme (E3)-related genes in the protease degradation systems were conducive to air space-type variegation formation. Because these family genes are necessary for plant growth and development, the mechanism of the leaf variegation formation in <i<T. pratense</i< might be a widely existing regulation in air space-type variegation in nature.
abstractGer	Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae with V-shaped air space-type variegation, was selected to explore the application potential of variegated leaf plants and accumulate basic data on the molecular regulatory mechanism and evolutionary history of leaf variegation. We performed comparative transcriptome analysis on young and adult leaflets of variegated and green plants and identified 43 candidate genes related to air space-type variegation formation. Most of the genes were related to cell-wall structure modification (<i<CESA</i<, <i<CSL</i<, <i<EXP</i<, <i<FLA</i<, <i<PG</i<, <i<PGIP</i<, <i<PLL</i<, <i<PME</i<, <i<RGP</i<, <i<SKS</i<, and <i<XTH</i< family genes), followed by photosynthesis (<i<LHCB</i< subfamily, <i<RBCS</i<, <i<GOX</i<, and <i<AGT</i< family genes), redox (<i<2OG</i< and <i<GSH</i< family genes), and nitrogen metabolism (<i<NodGS</i< family genes). Other genes were related to photooxidation, protein interaction, and protease degradation systems. The downregulated expression of light-responsive <i<LHCB</i< subfamily genes and the upregulated expression of the genes involved in cell-wall structure modification were important conditions for air space-type variegation formation in <i<T. pratense</i<. The upregulated expression of the ubiquitin-protein ligase enzyme (E3)-related genes in the protease degradation systems were conducive to air space-type variegation formation. Because these family genes are necessary for plant growth and development, the mechanism of the leaf variegation formation in <i<T. pratense</i< might be a widely existing regulation in air space-type variegation in nature.
abstract_unstemmed	Air space-type variegation is the most diverse among the species of known variegated leaf plants and is caused by conspicuous intercellular spaces between the epidermal and palisade cells and among the palisade cells at non-green areas. <i<Trifolium pratense</i<, a species in Fabaceae with V-shaped air space-type variegation, was selected to explore the application potential of variegated leaf plants and accumulate basic data on the molecular regulatory mechanism and evolutionary history of leaf variegation. We performed comparative transcriptome analysis on young and adult leaflets of variegated and green plants and identified 43 candidate genes related to air space-type variegation formation. Most of the genes were related to cell-wall structure modification (<i<CESA</i<, <i<CSL</i<, <i<EXP</i<, <i<FLA</i<, <i<PG</i<, <i<PGIP</i<, <i<PLL</i<, <i<PME</i<, <i<RGP</i<, <i<SKS</i<, and <i<XTH</i< family genes), followed by photosynthesis (<i<LHCB</i< subfamily, <i<RBCS</i<, <i<GOX</i<, and <i<AGT</i< family genes), redox (<i<2OG</i< and <i<GSH</i< family genes), and nitrogen metabolism (<i<NodGS</i< family genes). Other genes were related to photooxidation, protein interaction, and protease degradation systems. The downregulated expression of light-responsive <i<LHCB</i< subfamily genes and the upregulated expression of the genes involved in cell-wall structure modification were important conditions for air space-type variegation formation in <i<T. pratense</i<. The upregulated expression of the ubiquitin-protein ligase enzyme (E3)-related genes in the protease degradation systems were conducive to air space-type variegation formation. Because these family genes are necessary for plant growth and development, the mechanism of the leaf variegation formation in <i<T. pratense</i< might be a widely existing regulation in air space-type variegation in nature.
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container_issue	14, p 7794
title_short	Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i<
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Transcriptome Analysis of Air Space-Type Variegation Formation in <i<Trifolium pratense</i<

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