Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growin...
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Autor*in:	Dong Han Choi [verfasserIn] Gwang II Jang [verfasserIn] Alla Lapidus [verfasserIn] Alex Copeland [verfasserIn] T. B. K. Reddy [verfasserIn] Supratim Mukherjee [verfasserIn] Marcel Huntemann [verfasserIn] Neha Varghese [verfasserIn] Natalia Ivanova [verfasserIn] Manoj Pillay [verfasserIn] Brian J. Tindall [verfasserIn] Markus Göker [verfasserIn] Tanja Woyke [verfasserIn] Hans-Peter Klenk [verfasserIn] Nikos C. Kyrpides [verfasserIn] Byung Cheol Cho [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2017

Schlagwörter:	Genome Marinobacterium rhizophilum Suaeda Japonica Rhizosphere GEBA

Übergeordnetes Werk:	In: Standards in Genomic Sciences - BMC, 2015, 12(2017), 1, Seite 7
Übergeordnetes Werk:	volume:12 ; year:2017 ; number:1 ; pages:7

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.1186/s40793-017-0275-x

Katalog-ID:	DOAJ027040313

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520			\|a Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia.
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650		4	\|a Marinobacterium rhizophilum
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allfields	10.1186/s40793-017-0275-x doi (DE-627)DOAJ027040313 (DE-599)DOAJ76ea3866377343cc9b51918cbc25f710 DE-627 ger DE-627 rakwb eng QH426-470 Dong Han Choi verfasserin aut Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia. Genome Marinobacterium rhizophilum Suaeda Japonica Rhizosphere GEBA Genetics Gwang II Jang verfasserin aut Alla Lapidus verfasserin aut Alex Copeland verfasserin aut T. B. K. Reddy verfasserin aut Supratim Mukherjee verfasserin aut Marcel Huntemann verfasserin aut Neha Varghese verfasserin aut Natalia Ivanova verfasserin aut Manoj Pillay verfasserin aut Brian J. Tindall verfasserin aut Markus Göker verfasserin aut Tanja Woyke verfasserin aut Hans-Peter Klenk verfasserin aut Nikos C. Kyrpides verfasserin aut Byung Cheol Cho verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 7 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:7 https://doi.org/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/article/76ea3866377343cc9b51918cbc25f710 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 7
spelling	10.1186/s40793-017-0275-x doi (DE-627)DOAJ027040313 (DE-599)DOAJ76ea3866377343cc9b51918cbc25f710 DE-627 ger DE-627 rakwb eng QH426-470 Dong Han Choi verfasserin aut Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia. Genome Marinobacterium rhizophilum Suaeda Japonica Rhizosphere GEBA Genetics Gwang II Jang verfasserin aut Alla Lapidus verfasserin aut Alex Copeland verfasserin aut T. B. K. Reddy verfasserin aut Supratim Mukherjee verfasserin aut Marcel Huntemann verfasserin aut Neha Varghese verfasserin aut Natalia Ivanova verfasserin aut Manoj Pillay verfasserin aut Brian J. Tindall verfasserin aut Markus Göker verfasserin aut Tanja Woyke verfasserin aut Hans-Peter Klenk verfasserin aut Nikos C. Kyrpides verfasserin aut Byung Cheol Cho verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 7 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:7 https://doi.org/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/article/76ea3866377343cc9b51918cbc25f710 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 7
allfields_unstemmed	10.1186/s40793-017-0275-x doi (DE-627)DOAJ027040313 (DE-599)DOAJ76ea3866377343cc9b51918cbc25f710 DE-627 ger DE-627 rakwb eng QH426-470 Dong Han Choi verfasserin aut Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia. Genome Marinobacterium rhizophilum Suaeda Japonica Rhizosphere GEBA Genetics Gwang II Jang verfasserin aut Alla Lapidus verfasserin aut Alex Copeland verfasserin aut T. B. K. Reddy verfasserin aut Supratim Mukherjee verfasserin aut Marcel Huntemann verfasserin aut Neha Varghese verfasserin aut Natalia Ivanova verfasserin aut Manoj Pillay verfasserin aut Brian J. Tindall verfasserin aut Markus Göker verfasserin aut Tanja Woyke verfasserin aut Hans-Peter Klenk verfasserin aut Nikos C. Kyrpides verfasserin aut Byung Cheol Cho verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 7 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:7 https://doi.org/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/article/76ea3866377343cc9b51918cbc25f710 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 7
allfieldsGer	10.1186/s40793-017-0275-x doi (DE-627)DOAJ027040313 (DE-599)DOAJ76ea3866377343cc9b51918cbc25f710 DE-627 ger DE-627 rakwb eng QH426-470 Dong Han Choi verfasserin aut Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia. Genome Marinobacterium rhizophilum Suaeda Japonica Rhizosphere GEBA Genetics Gwang II Jang verfasserin aut Alla Lapidus verfasserin aut Alex Copeland verfasserin aut T. B. K. Reddy verfasserin aut Supratim Mukherjee verfasserin aut Marcel Huntemann verfasserin aut Neha Varghese verfasserin aut Natalia Ivanova verfasserin aut Manoj Pillay verfasserin aut Brian J. Tindall verfasserin aut Markus Göker verfasserin aut Tanja Woyke verfasserin aut Hans-Peter Klenk verfasserin aut Nikos C. Kyrpides verfasserin aut Byung Cheol Cho verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 7 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:7 https://doi.org/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/article/76ea3866377343cc9b51918cbc25f710 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 7
allfieldsSound	10.1186/s40793-017-0275-x doi (DE-627)DOAJ027040313 (DE-599)DOAJ76ea3866377343cc9b51918cbc25f710 DE-627 ger DE-627 rakwb eng QH426-470 Dong Han Choi verfasserin aut Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia. Genome Marinobacterium rhizophilum Suaeda Japonica Rhizosphere GEBA Genetics Gwang II Jang verfasserin aut Alla Lapidus verfasserin aut Alex Copeland verfasserin aut T. B. K. Reddy verfasserin aut Supratim Mukherjee verfasserin aut Marcel Huntemann verfasserin aut Neha Varghese verfasserin aut Natalia Ivanova verfasserin aut Manoj Pillay verfasserin aut Brian J. Tindall verfasserin aut Markus Göker verfasserin aut Tanja Woyke verfasserin aut Hans-Peter Klenk verfasserin aut Nikos C. Kyrpides verfasserin aut Byung Cheol Cho verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 7 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:7 https://doi.org/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/article/76ea3866377343cc9b51918cbc25f710 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0275-x kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 7
language	English
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container_title	Standards in Genomic Sciences
authorswithroles_txt_mv	Dong Han Choi @@aut@@ Gwang II Jang @@aut@@ Alla Lapidus @@aut@@ Alex Copeland @@aut@@ T. B. K. Reddy @@aut@@ Supratim Mukherjee @@aut@@ Marcel Huntemann @@aut@@ Neha Varghese @@aut@@ Natalia Ivanova @@aut@@ Manoj Pillay @@aut@@ Brian J. Tindall @@aut@@ Markus Göker @@aut@@ Tanja Woyke @@aut@@ Hans-Peter Klenk @@aut@@ Nikos C. Kyrpides @@aut@@ Byung Cheol Cho @@aut@@
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callnumber-first	Q - Science
author	Dong Han Choi
spellingShingle	Dong Han Choi misc QH426-470 misc Genome misc Marinobacterium rhizophilum misc Suaeda Japonica misc Rhizosphere misc GEBA misc Genetics Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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topic_title	QH426-470 Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica Genome Marinobacterium rhizophilum Suaeda Japonica Rhizosphere GEBA
topic	misc QH426-470 misc Genome misc Marinobacterium rhizophilum misc Suaeda Japonica misc Rhizosphere misc GEBA misc Genetics
topic_unstemmed	misc QH426-470 misc Genome misc Marinobacterium rhizophilum misc Suaeda Japonica misc Rhizosphere misc GEBA misc Genetics
topic_browse	misc QH426-470 misc Genome misc Marinobacterium rhizophilum misc Suaeda Japonica misc Rhizosphere misc GEBA misc Genetics
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title	Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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title_full	Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
author_sort	Dong Han Choi
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author_browse	Dong Han Choi Gwang II Jang Alla Lapidus Alex Copeland T. B. K. Reddy Supratim Mukherjee Marcel Huntemann Neha Varghese Natalia Ivanova Manoj Pillay Brian J. Tindall Markus Göker Tanja Woyke Hans-Peter Klenk Nikos C. Kyrpides Byung Cheol Cho
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title_sort	draft genome sequence of marinobacterium rhizophilum cl-yj9t (dsm 18822t), isolated from the rhizosphere of the coastal tidal-flat plant suaeda japonica
callnumber	QH426-470
title_auth	Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
abstract	Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia.
abstractGer	Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia.
abstract_unstemmed	Abstract The genus Marinobacterium belongs to the family Alteromonadaceae within the class Gammaproteobacteria and was reported in 1997. Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. In addition, the strain has a number of genes to defense against oxygen stresses such as reactive oxygen species and hypoxia.
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container_issue	1
title_short	Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
url	https://doi.org/10.1186/s40793-017-0275-x https://doaj.org/article/76ea3866377343cc9b51918cbc25f710 http://link.springer.com/article/10.1186/s40793-017-0275-x https://doaj.org/toc/1944-3277
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author2	Gwang II Jang Alla Lapidus Alex Copeland T. B. K. Reddy Supratim Mukherjee Marcel Huntemann Neha Varghese Natalia Ivanova Manoj Pillay Brian J. Tindall Markus Göker Tanja Woyke Hans-Peter Klenk Nikos C. Kyrpides Byung Cheol Cho
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Currently the genus Marinobacterium contains 16 species. Marinobacterium rhizophilum CL-YJ9T was isolated from sediment associated with the roots of a plant growing in a tidal flat of Youngjong Island, Korea. The genome of the strain CL-YJ9T was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: KMG project. Here we report the main features of the draft genome of the strain. The 5,364,574 bp long draft genome consists of 58 scaffolds with 4762 protein-coding and 91 RNA genes. Based on the genomic analyses, the strain seems to adapt to osmotic changes by intracellular production as well as extracellular uptake of compatible solutes, such as ectoine and betaine. 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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

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