Unearthing the ecology of soil microorganisms using a high resolution DNA-SIP approach to explore cellulose and xylose metabolism in soil

We explored microbial contributions to decomposition using a sophisticated approach to DNA Stable Isotope Probing (SIP). Our experiment evaluated the dynamics and ecological characteristics of functionally defined microbial groups that metabolize labile and structural C in soils. We added to soil a...
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Autor*in:	Charles ePepe-Ranney [verfasserIn] Ashley N Campbell [verfasserIn] Chantal N Koechli [verfasserIn] Sean eBerthrong [verfasserIn] Daniel H Buckley [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2016

Schlagwörter:	Carbon Cycle Cellulose Soil Verrucomicrobia stable isotope probing decomposition

Übergeordnetes Werk:	In: Frontiers in Microbiology - Frontiers Media S.A., 2011, 7(2016)
Übergeordnetes Werk:	volume:7 ; year:2016

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3389/fmicb.2016.00703

Katalog-ID:	DOAJ02755225X

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language	English
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topic_facet	Carbon Cycle Cellulose Soil Verrucomicrobia stable isotope probing decomposition Microbiology
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authorswithroles_txt_mv	Charles ePepe-Ranney @@aut@@ Ashley N Campbell @@aut@@ Chantal N Koechli @@aut@@ Sean eBerthrong @@aut@@ Daniel H Buckley @@aut@@
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callnumber-first	Q - Science
author	Charles ePepe-Ranney
spellingShingle	Charles ePepe-Ranney misc QR1-502 misc Carbon Cycle misc Cellulose misc Soil misc Verrucomicrobia misc stable isotope probing misc decomposition misc Microbiology Unearthing the ecology of soil microorganisms using a high resolution DNA-SIP approach to explore cellulose and xylose metabolism in soil
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topic_title	QR1-502 Unearthing the ecology of soil microorganisms using a high resolution DNA-SIP approach to explore cellulose and xylose metabolism in soil Carbon Cycle Cellulose Soil Verrucomicrobia stable isotope probing decomposition
topic	misc QR1-502 misc Carbon Cycle misc Cellulose misc Soil misc Verrucomicrobia misc stable isotope probing misc decomposition misc Microbiology
topic_unstemmed	misc QR1-502 misc Carbon Cycle misc Cellulose misc Soil misc Verrucomicrobia misc stable isotope probing misc decomposition misc Microbiology
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title	Unearthing the ecology of soil microorganisms using a high resolution DNA-SIP approach to explore cellulose and xylose metabolism in soil
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title_full	Unearthing the ecology of soil microorganisms using a high resolution DNA-SIP approach to explore cellulose and xylose metabolism in soil
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title_sort	unearthing the ecology of soil microorganisms using a high resolution dna-sip approach to explore cellulose and xylose metabolism in soil
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title_auth	Unearthing the ecology of soil microorganisms using a high resolution DNA-SIP approach to explore cellulose and xylose metabolism in soil
abstract	We explored microbial contributions to decomposition using a sophisticated approach to DNA Stable Isotope Probing (SIP). Our experiment evaluated the dynamics and ecological characteristics of functionally defined microbial groups that metabolize labile and structural C in soils. We added to soil a complex amendment representing plant derived organic matter substituted with either 13C-xylose or 13C-cellulose to represent labile and structural C pools derived from abundant components of plant biomass. We found evidence for 13C-incorporation into DNA from 13C-xylose and 13C-cellulose in 49 and 63 operational taxonomic units (OTUs), respectively. The types of microorganisms that assimilated 13C in the 13C-xylose treatment changed over time being predominantly Firmicutes at day 1 followed by Bacteroidetes at day 3 and then Actinobacteria at day 7. These 13C-labeling dynamics suggest labile C traveled through different trophic levels. In contrast, microorganisms generally metabolized cellulose-C after 14 days and did not change to the same extent in phylogenetic composition over time. Microorganisms that metabolized cellulose-C belonged to poorly characterized but cosmopolitan soil lineages including Verrucomicrobia, Chloroflexi and Planctomycetes.
abstractGer	We explored microbial contributions to decomposition using a sophisticated approach to DNA Stable Isotope Probing (SIP). Our experiment evaluated the dynamics and ecological characteristics of functionally defined microbial groups that metabolize labile and structural C in soils. We added to soil a complex amendment representing plant derived organic matter substituted with either 13C-xylose or 13C-cellulose to represent labile and structural C pools derived from abundant components of plant biomass. We found evidence for 13C-incorporation into DNA from 13C-xylose and 13C-cellulose in 49 and 63 operational taxonomic units (OTUs), respectively. The types of microorganisms that assimilated 13C in the 13C-xylose treatment changed over time being predominantly Firmicutes at day 1 followed by Bacteroidetes at day 3 and then Actinobacteria at day 7. These 13C-labeling dynamics suggest labile C traveled through different trophic levels. In contrast, microorganisms generally metabolized cellulose-C after 14 days and did not change to the same extent in phylogenetic composition over time. Microorganisms that metabolized cellulose-C belonged to poorly characterized but cosmopolitan soil lineages including Verrucomicrobia, Chloroflexi and Planctomycetes.
abstract_unstemmed	We explored microbial contributions to decomposition using a sophisticated approach to DNA Stable Isotope Probing (SIP). Our experiment evaluated the dynamics and ecological characteristics of functionally defined microbial groups that metabolize labile and structural C in soils. We added to soil a complex amendment representing plant derived organic matter substituted with either 13C-xylose or 13C-cellulose to represent labile and structural C pools derived from abundant components of plant biomass. We found evidence for 13C-incorporation into DNA from 13C-xylose and 13C-cellulose in 49 and 63 operational taxonomic units (OTUs), respectively. The types of microorganisms that assimilated 13C in the 13C-xylose treatment changed over time being predominantly Firmicutes at day 1 followed by Bacteroidetes at day 3 and then Actinobacteria at day 7. These 13C-labeling dynamics suggest labile C traveled through different trophic levels. In contrast, microorganisms generally metabolized cellulose-C after 14 days and did not change to the same extent in phylogenetic composition over time. Microorganisms that metabolized cellulose-C belonged to poorly characterized but cosmopolitan soil lineages including Verrucomicrobia, Chloroflexi and Planctomycetes.
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title_short	Unearthing the ecology of soil microorganisms using a high resolution DNA-SIP approach to explore cellulose and xylose metabolism in soil
url	https://doi.org/10.3389/fmicb.2016.00703 https://doaj.org/article/1930d2b234274682b5b41a21ff87ed92 http://journal.frontiersin.org/Journal/10.3389/fmicb.2016.00703/full https://doaj.org/toc/1664-302X
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