Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robu...
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Autor*in:	Chrizelle W. Beukes [verfasserIn] Marike Palmer [verfasserIn] Puseletso Manyaka [verfasserIn] Wai Y. Chan [verfasserIn] Juanita R. Avontuur [verfasserIn] Elritha van Zyl [verfasserIn] Marcel Huntemann [verfasserIn] Alicia Clum [verfasserIn] Manoj Pillay [verfasserIn] Krishnaveni Palaniappan [verfasserIn] Neha Varghese [verfasserIn] Natalia Mikhailova [verfasserIn] Dimitrios Stamatis [verfasserIn] T. B. K. Reddy [verfasserIn] Chris Daum [verfasserIn] Nicole Shapiro [verfasserIn] Victor Markowitz [verfasserIn] Natalia Ivanova [verfasserIn] Nikos Kyrpides [verfasserIn] Tanja Woyke [verfasserIn] Jochen Blom [verfasserIn] William B. Whitman [verfasserIn] Stephanus N. Venter [verfasserIn] Emma T. Steenkamp [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2017

Schlagwörter:	Burkholderia Paraburkholderia Caballeronia phylogenomics Robbsia andropogonis Burkholderia rhizoxinica

Übergeordnetes Werk:	In: Frontiers in Microbiology - Frontiers Media S.A., 2011, 8(2017)
Übergeordnetes Werk:	volume:8 ; year:2017

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3389/fmicb.2017.01154

Katalog-ID:	DOAJ040523535

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allfields	10.3389/fmicb.2017.01154 doi (DE-627)DOAJ040523535 (DE-599)DOAJ3b063a4547e749feb465391a1bbdde0e DE-627 ger DE-627 rakwb eng QR1-502 Chrizelle W. Beukes verfasserin aut Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato. These data unambiguously supported five distinct lineages, of which four correspond to Burkholderia sensu stricto and the newly introduced genera Paraburkholderia, Caballeronia, and Robbsia. The fifth lineage was represented by P. rhizoxinica. Based on these findings, we propose 13 new combinations for those species previously described as members of Burkholderia but that form part of Caballeronia. These findings also suggest revision of the taxonomic status of P. rhizoxinica as it is does not form part of any of the genera currently recognized in Burkholderia sensu lato. From a phylogenetic point of view, Burkholderia sensu stricto has a sister relationship with the Caballeronia+Paraburkholderia clade. Also, the lineages represented by P. rhizoxinica and R. andropogonis, respectively, emerged prior to the radiation of the Burkholderia sensu stricto+Caballeronia+Paraburkholderia clade. Our findings therefore constitute a solid framework, not only for supporting current and future taxonomic decisions, but also for studying the evolution of this assemblage of medically, industrially and agriculturally important species. Burkholderia Paraburkholderia Caballeronia phylogenomics Robbsia andropogonis Burkholderia rhizoxinica Microbiology Marike Palmer verfasserin aut Puseletso Manyaka verfasserin aut Wai Y. Chan verfasserin aut Juanita R. Avontuur verfasserin aut Elritha van Zyl verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Chris Daum verfasserin aut Nicole Shapiro verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Jochen Blom verfasserin aut William B. Whitman verfasserin aut Stephanus N. Venter verfasserin aut Emma T. Steenkamp verfasserin aut In Frontiers in Microbiology Frontiers Media S.A., 2011 8(2017) (DE-627)642889384 (DE-600)2587354-4 1664302X nnns volume:8 year:2017 https://doi.org/10.3389/fmicb.2017.01154 kostenfrei https://doaj.org/article/3b063a4547e749feb465391a1bbdde0e kostenfrei http://journal.frontiersin.org/article/10.3389/fmicb.2017.01154/full kostenfrei https://doaj.org/toc/1664-302X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2017
spelling	10.3389/fmicb.2017.01154 doi (DE-627)DOAJ040523535 (DE-599)DOAJ3b063a4547e749feb465391a1bbdde0e DE-627 ger DE-627 rakwb eng QR1-502 Chrizelle W. Beukes verfasserin aut Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato. These data unambiguously supported five distinct lineages, of which four correspond to Burkholderia sensu stricto and the newly introduced genera Paraburkholderia, Caballeronia, and Robbsia. The fifth lineage was represented by P. rhizoxinica. Based on these findings, we propose 13 new combinations for those species previously described as members of Burkholderia but that form part of Caballeronia. These findings also suggest revision of the taxonomic status of P. rhizoxinica as it is does not form part of any of the genera currently recognized in Burkholderia sensu lato. From a phylogenetic point of view, Burkholderia sensu stricto has a sister relationship with the Caballeronia+Paraburkholderia clade. Also, the lineages represented by P. rhizoxinica and R. andropogonis, respectively, emerged prior to the radiation of the Burkholderia sensu stricto+Caballeronia+Paraburkholderia clade. Our findings therefore constitute a solid framework, not only for supporting current and future taxonomic decisions, but also for studying the evolution of this assemblage of medically, industrially and agriculturally important species. Burkholderia Paraburkholderia Caballeronia phylogenomics Robbsia andropogonis Burkholderia rhizoxinica Microbiology Marike Palmer verfasserin aut Puseletso Manyaka verfasserin aut Wai Y. Chan verfasserin aut Juanita R. Avontuur verfasserin aut Elritha van Zyl verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Chris Daum verfasserin aut Nicole Shapiro verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Jochen Blom verfasserin aut William B. Whitman verfasserin aut Stephanus N. Venter verfasserin aut Emma T. Steenkamp verfasserin aut In Frontiers in Microbiology Frontiers Media S.A., 2011 8(2017) (DE-627)642889384 (DE-600)2587354-4 1664302X nnns volume:8 year:2017 https://doi.org/10.3389/fmicb.2017.01154 kostenfrei https://doaj.org/article/3b063a4547e749feb465391a1bbdde0e kostenfrei http://journal.frontiersin.org/article/10.3389/fmicb.2017.01154/full kostenfrei https://doaj.org/toc/1664-302X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2017
allfields_unstemmed	10.3389/fmicb.2017.01154 doi (DE-627)DOAJ040523535 (DE-599)DOAJ3b063a4547e749feb465391a1bbdde0e DE-627 ger DE-627 rakwb eng QR1-502 Chrizelle W. Beukes verfasserin aut Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato. These data unambiguously supported five distinct lineages, of which four correspond to Burkholderia sensu stricto and the newly introduced genera Paraburkholderia, Caballeronia, and Robbsia. The fifth lineage was represented by P. rhizoxinica. Based on these findings, we propose 13 new combinations for those species previously described as members of Burkholderia but that form part of Caballeronia. These findings also suggest revision of the taxonomic status of P. rhizoxinica as it is does not form part of any of the genera currently recognized in Burkholderia sensu lato. From a phylogenetic point of view, Burkholderia sensu stricto has a sister relationship with the Caballeronia+Paraburkholderia clade. Also, the lineages represented by P. rhizoxinica and R. andropogonis, respectively, emerged prior to the radiation of the Burkholderia sensu stricto+Caballeronia+Paraburkholderia clade. Our findings therefore constitute a solid framework, not only for supporting current and future taxonomic decisions, but also for studying the evolution of this assemblage of medically, industrially and agriculturally important species. Burkholderia Paraburkholderia Caballeronia phylogenomics Robbsia andropogonis Burkholderia rhizoxinica Microbiology Marike Palmer verfasserin aut Puseletso Manyaka verfasserin aut Wai Y. Chan verfasserin aut Juanita R. Avontuur verfasserin aut Elritha van Zyl verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Chris Daum verfasserin aut Nicole Shapiro verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Jochen Blom verfasserin aut William B. Whitman verfasserin aut Stephanus N. Venter verfasserin aut Emma T. Steenkamp verfasserin aut In Frontiers in Microbiology Frontiers Media S.A., 2011 8(2017) (DE-627)642889384 (DE-600)2587354-4 1664302X nnns volume:8 year:2017 https://doi.org/10.3389/fmicb.2017.01154 kostenfrei https://doaj.org/article/3b063a4547e749feb465391a1bbdde0e kostenfrei http://journal.frontiersin.org/article/10.3389/fmicb.2017.01154/full kostenfrei https://doaj.org/toc/1664-302X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2017
allfieldsGer	10.3389/fmicb.2017.01154 doi (DE-627)DOAJ040523535 (DE-599)DOAJ3b063a4547e749feb465391a1bbdde0e DE-627 ger DE-627 rakwb eng QR1-502 Chrizelle W. Beukes verfasserin aut Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato. These data unambiguously supported five distinct lineages, of which four correspond to Burkholderia sensu stricto and the newly introduced genera Paraburkholderia, Caballeronia, and Robbsia. The fifth lineage was represented by P. rhizoxinica. Based on these findings, we propose 13 new combinations for those species previously described as members of Burkholderia but that form part of Caballeronia. These findings also suggest revision of the taxonomic status of P. rhizoxinica as it is does not form part of any of the genera currently recognized in Burkholderia sensu lato. From a phylogenetic point of view, Burkholderia sensu stricto has a sister relationship with the Caballeronia+Paraburkholderia clade. Also, the lineages represented by P. rhizoxinica and R. andropogonis, respectively, emerged prior to the radiation of the Burkholderia sensu stricto+Caballeronia+Paraburkholderia clade. Our findings therefore constitute a solid framework, not only for supporting current and future taxonomic decisions, but also for studying the evolution of this assemblage of medically, industrially and agriculturally important species. Burkholderia Paraburkholderia Caballeronia phylogenomics Robbsia andropogonis Burkholderia rhizoxinica Microbiology Marike Palmer verfasserin aut Puseletso Manyaka verfasserin aut Wai Y. Chan verfasserin aut Juanita R. Avontuur verfasserin aut Elritha van Zyl verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Chris Daum verfasserin aut Nicole Shapiro verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Jochen Blom verfasserin aut William B. Whitman verfasserin aut Stephanus N. Venter verfasserin aut Emma T. Steenkamp verfasserin aut In Frontiers in Microbiology Frontiers Media S.A., 2011 8(2017) (DE-627)642889384 (DE-600)2587354-4 1664302X nnns volume:8 year:2017 https://doi.org/10.3389/fmicb.2017.01154 kostenfrei https://doaj.org/article/3b063a4547e749feb465391a1bbdde0e kostenfrei http://journal.frontiersin.org/article/10.3389/fmicb.2017.01154/full kostenfrei https://doaj.org/toc/1664-302X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2017
allfieldsSound	10.3389/fmicb.2017.01154 doi (DE-627)DOAJ040523535 (DE-599)DOAJ3b063a4547e749feb465391a1bbdde0e DE-627 ger DE-627 rakwb eng QR1-502 Chrizelle W. Beukes verfasserin aut Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato. These data unambiguously supported five distinct lineages, of which four correspond to Burkholderia sensu stricto and the newly introduced genera Paraburkholderia, Caballeronia, and Robbsia. The fifth lineage was represented by P. rhizoxinica. Based on these findings, we propose 13 new combinations for those species previously described as members of Burkholderia but that form part of Caballeronia. These findings also suggest revision of the taxonomic status of P. rhizoxinica as it is does not form part of any of the genera currently recognized in Burkholderia sensu lato. From a phylogenetic point of view, Burkholderia sensu stricto has a sister relationship with the Caballeronia+Paraburkholderia clade. Also, the lineages represented by P. rhizoxinica and R. andropogonis, respectively, emerged prior to the radiation of the Burkholderia sensu stricto+Caballeronia+Paraburkholderia clade. Our findings therefore constitute a solid framework, not only for supporting current and future taxonomic decisions, but also for studying the evolution of this assemblage of medically, industrially and agriculturally important species. Burkholderia Paraburkholderia Caballeronia phylogenomics Robbsia andropogonis Burkholderia rhizoxinica Microbiology Marike Palmer verfasserin aut Puseletso Manyaka verfasserin aut Wai Y. Chan verfasserin aut Juanita R. Avontuur verfasserin aut Elritha van Zyl verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Chris Daum verfasserin aut Nicole Shapiro verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Jochen Blom verfasserin aut William B. Whitman verfasserin aut Stephanus N. Venter verfasserin aut Emma T. Steenkamp verfasserin aut In Frontiers in Microbiology Frontiers Media S.A., 2011 8(2017) (DE-627)642889384 (DE-600)2587354-4 1664302X nnns volume:8 year:2017 https://doi.org/10.3389/fmicb.2017.01154 kostenfrei https://doaj.org/article/3b063a4547e749feb465391a1bbdde0e kostenfrei http://journal.frontiersin.org/article/10.3389/fmicb.2017.01154/full kostenfrei https://doaj.org/toc/1664-302X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2017
language	English
source	In Frontiers in Microbiology 8(2017) volume:8 year:2017
sourceStr	In Frontiers in Microbiology 8(2017) volume:8 year:2017
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Burkholderia Paraburkholderia Caballeronia phylogenomics Robbsia andropogonis Burkholderia rhizoxinica Microbiology
isfreeaccess_bool	true
container_title	Frontiers in Microbiology
authorswithroles_txt_mv	Chrizelle W. Beukes @@aut@@ Marike Palmer @@aut@@ Puseletso Manyaka @@aut@@ Wai Y. Chan @@aut@@ Juanita R. Avontuur @@aut@@ Elritha van Zyl @@aut@@ Marcel Huntemann @@aut@@ Alicia Clum @@aut@@ Manoj Pillay @@aut@@ Krishnaveni Palaniappan @@aut@@ Neha Varghese @@aut@@ Natalia Mikhailova @@aut@@ Dimitrios Stamatis @@aut@@ T. B. K. Reddy @@aut@@ Chris Daum @@aut@@ Nicole Shapiro @@aut@@ Victor Markowitz @@aut@@ Natalia Ivanova @@aut@@ Nikos Kyrpides @@aut@@ Tanja Woyke @@aut@@ Jochen Blom @@aut@@ William B. Whitman @@aut@@ Stephanus N. Venter @@aut@@ Emma T. Steenkamp @@aut@@
publishDateDaySort_date	2017-01-01T00:00:00Z
hierarchy_top_id	642889384
id	DOAJ040523535
language_de	englisch
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author	Chrizelle W. Beukes
spellingShingle	Chrizelle W. Beukes misc QR1-502 misc Burkholderia misc Paraburkholderia misc Caballeronia misc phylogenomics misc Robbsia andropogonis misc Burkholderia rhizoxinica misc Microbiology Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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topic_title	QR1-502 Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato Burkholderia Paraburkholderia Caballeronia phylogenomics Robbsia andropogonis Burkholderia rhizoxinica
topic	misc QR1-502 misc Burkholderia misc Paraburkholderia misc Caballeronia misc phylogenomics misc Robbsia andropogonis misc Burkholderia rhizoxinica misc Microbiology
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title	Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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title_full	Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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title_sort	genome data provides high support for generic boundaries in burkholderia sensu lato
callnumber	QR1-502
title_auth	Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
abstract	Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato. These data unambiguously supported five distinct lineages, of which four correspond to Burkholderia sensu stricto and the newly introduced genera Paraburkholderia, Caballeronia, and Robbsia. The fifth lineage was represented by P. rhizoxinica. Based on these findings, we propose 13 new combinations for those species previously described as members of Burkholderia but that form part of Caballeronia. These findings also suggest revision of the taxonomic status of P. rhizoxinica as it is does not form part of any of the genera currently recognized in Burkholderia sensu lato. From a phylogenetic point of view, Burkholderia sensu stricto has a sister relationship with the Caballeronia+Paraburkholderia clade. Also, the lineages represented by P. rhizoxinica and R. andropogonis, respectively, emerged prior to the radiation of the Burkholderia sensu stricto+Caballeronia+Paraburkholderia clade. Our findings therefore constitute a solid framework, not only for supporting current and future taxonomic decisions, but also for studying the evolution of this assemblage of medically, industrially and agriculturally important species.
abstractGer	Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato. These data unambiguously supported five distinct lineages, of which four correspond to Burkholderia sensu stricto and the newly introduced genera Paraburkholderia, Caballeronia, and Robbsia. The fifth lineage was represented by P. rhizoxinica. Based on these findings, we propose 13 new combinations for those species previously described as members of Burkholderia but that form part of Caballeronia. These findings also suggest revision of the taxonomic status of P. rhizoxinica as it is does not form part of any of the genera currently recognized in Burkholderia sensu lato. From a phylogenetic point of view, Burkholderia sensu stricto has a sister relationship with the Caballeronia+Paraburkholderia clade. Also, the lineages represented by P. rhizoxinica and R. andropogonis, respectively, emerged prior to the radiation of the Burkholderia sensu stricto+Caballeronia+Paraburkholderia clade. Our findings therefore constitute a solid framework, not only for supporting current and future taxonomic decisions, but also for studying the evolution of this assemblage of medically, industrially and agriculturally important species.
abstract_unstemmed	Although the taxonomy of Burkholderia has been extensively scrutinized, significant uncertainty remains regarding the generic boundaries and composition of this large and heterogeneous taxon. Here we used the amino acid and nucleotide sequences of 106 conserved proteins from 92 species to infer robust maximum likelihood phylogenies with which to investigate the generic structure of Burkholderia sensu lato. These data unambiguously supported five distinct lineages, of which four correspond to Burkholderia sensu stricto and the newly introduced genera Paraburkholderia, Caballeronia, and Robbsia. The fifth lineage was represented by P. rhizoxinica. Based on these findings, we propose 13 new combinations for those species previously described as members of Burkholderia but that form part of Caballeronia. These findings also suggest revision of the taxonomic status of P. rhizoxinica as it is does not form part of any of the genera currently recognized in Burkholderia sensu lato. From a phylogenetic point of view, Burkholderia sensu stricto has a sister relationship with the Caballeronia+Paraburkholderia clade. Also, the lineages represented by P. rhizoxinica and R. andropogonis, respectively, emerged prior to the radiation of the Burkholderia sensu stricto+Caballeronia+Paraburkholderia clade. Our findings therefore constitute a solid framework, not only for supporting current and future taxonomic decisions, but also for studying the evolution of this assemblage of medically, industrially and agriculturally important species.
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title_short	Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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