Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species
<p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but info...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Cai Guangqin [verfasserIn] Yang Qingyong [verfasserIn] Yang Qian [verfasserIn] Zhao Zhenxing [verfasserIn] Chen Hao [verfasserIn] Wu Jian [verfasserIn] Fan Chuchuan [verfasserIn] Zhou Yongming [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2012 |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
In: BMC Genetics - BMC, 2003, 13(2012), 1, p 105 |
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| Übergeordnetes Werk: |
volume:13 ; year:2012 ; number:1, p 105 |
| Links: |
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| DOI / URN: |
10.1186/1471-2156-13-105 |
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| Katalog-ID: |
DOAJ041433572 |
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| 245 | 1 | 0 | |a Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species |
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| 520 | |a <p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p< | ||
| 650 | 4 | |a Brassicaceae | |
| 650 | 4 | |a Rapeseed | |
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| 650 | 4 | |a Comparative mapping | |
| 650 | 4 | |a QTL | |
| 650 | 4 | |a Map-based cloning | |
| 650 | 4 | |a Seed weight | |
| 653 | 0 | |a Genetics | |
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| 700 | 0 | |a Yang Qian |e verfasserin |4 aut | |
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| 700 | 0 | |a Chen Hao |e verfasserin |4 aut | |
| 700 | 0 | |a Wu Jian |e verfasserin |4 aut | |
| 700 | 0 | |a Fan Chuchuan |e verfasserin |4 aut | |
| 700 | 0 | |a Zhou Yongming |e verfasserin |4 aut | |
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10.1186/1471-2156-13-105 doi (DE-627)DOAJ041433572 (DE-599)DOAJ85bfea5ef7684320a737e4f7c315104e DE-627 ger DE-627 rakwb eng QH426-470 Cai Guangqin verfasserin aut Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species 2012 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p< Brassicaceae Rapeseed <it<Arabidopsis</it< Comparative mapping QTL Map-based cloning Seed weight Genetics Yang Qingyong verfasserin aut Yang Qian verfasserin aut Zhao Zhenxing verfasserin aut Chen Hao verfasserin aut Wu Jian verfasserin aut Fan Chuchuan verfasserin aut Zhou Yongming verfasserin aut In BMC Genetics BMC, 2003 13(2012), 1, p 105 (DE-627)326644938 (DE-600)2041497-3 14712156 nnns volume:13 year:2012 number:1, p 105 https://doi.org/10.1186/1471-2156-13-105 kostenfrei https://doaj.org/article/85bfea5ef7684320a737e4f7c315104e kostenfrei http://www.biomedcentral.com/1471-2156/13/105 kostenfrei https://doaj.org/toc/1471-2156 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2012 1, p 105 |
| spelling |
10.1186/1471-2156-13-105 doi (DE-627)DOAJ041433572 (DE-599)DOAJ85bfea5ef7684320a737e4f7c315104e DE-627 ger DE-627 rakwb eng QH426-470 Cai Guangqin verfasserin aut Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species 2012 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p< Brassicaceae Rapeseed <it<Arabidopsis</it< Comparative mapping QTL Map-based cloning Seed weight Genetics Yang Qingyong verfasserin aut Yang Qian verfasserin aut Zhao Zhenxing verfasserin aut Chen Hao verfasserin aut Wu Jian verfasserin aut Fan Chuchuan verfasserin aut Zhou Yongming verfasserin aut In BMC Genetics BMC, 2003 13(2012), 1, p 105 (DE-627)326644938 (DE-600)2041497-3 14712156 nnns volume:13 year:2012 number:1, p 105 https://doi.org/10.1186/1471-2156-13-105 kostenfrei https://doaj.org/article/85bfea5ef7684320a737e4f7c315104e kostenfrei http://www.biomedcentral.com/1471-2156/13/105 kostenfrei https://doaj.org/toc/1471-2156 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2012 1, p 105 |
| allfields_unstemmed |
10.1186/1471-2156-13-105 doi (DE-627)DOAJ041433572 (DE-599)DOAJ85bfea5ef7684320a737e4f7c315104e DE-627 ger DE-627 rakwb eng QH426-470 Cai Guangqin verfasserin aut Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species 2012 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p< Brassicaceae Rapeseed <it<Arabidopsis</it< Comparative mapping QTL Map-based cloning Seed weight Genetics Yang Qingyong verfasserin aut Yang Qian verfasserin aut Zhao Zhenxing verfasserin aut Chen Hao verfasserin aut Wu Jian verfasserin aut Fan Chuchuan verfasserin aut Zhou Yongming verfasserin aut In BMC Genetics BMC, 2003 13(2012), 1, p 105 (DE-627)326644938 (DE-600)2041497-3 14712156 nnns volume:13 year:2012 number:1, p 105 https://doi.org/10.1186/1471-2156-13-105 kostenfrei https://doaj.org/article/85bfea5ef7684320a737e4f7c315104e kostenfrei http://www.biomedcentral.com/1471-2156/13/105 kostenfrei https://doaj.org/toc/1471-2156 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2012 1, p 105 |
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10.1186/1471-2156-13-105 doi (DE-627)DOAJ041433572 (DE-599)DOAJ85bfea5ef7684320a737e4f7c315104e DE-627 ger DE-627 rakwb eng QH426-470 Cai Guangqin verfasserin aut Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species 2012 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p< Brassicaceae Rapeseed <it<Arabidopsis</it< Comparative mapping QTL Map-based cloning Seed weight Genetics Yang Qingyong verfasserin aut Yang Qian verfasserin aut Zhao Zhenxing verfasserin aut Chen Hao verfasserin aut Wu Jian verfasserin aut Fan Chuchuan verfasserin aut Zhou Yongming verfasserin aut In BMC Genetics BMC, 2003 13(2012), 1, p 105 (DE-627)326644938 (DE-600)2041497-3 14712156 nnns volume:13 year:2012 number:1, p 105 https://doi.org/10.1186/1471-2156-13-105 kostenfrei https://doaj.org/article/85bfea5ef7684320a737e4f7c315104e kostenfrei http://www.biomedcentral.com/1471-2156/13/105 kostenfrei https://doaj.org/toc/1471-2156 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2012 1, p 105 |
| allfieldsSound |
10.1186/1471-2156-13-105 doi (DE-627)DOAJ041433572 (DE-599)DOAJ85bfea5ef7684320a737e4f7c315104e DE-627 ger DE-627 rakwb eng QH426-470 Cai Guangqin verfasserin aut Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species 2012 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p< Brassicaceae Rapeseed <it<Arabidopsis</it< Comparative mapping QTL Map-based cloning Seed weight Genetics Yang Qingyong verfasserin aut Yang Qian verfasserin aut Zhao Zhenxing verfasserin aut Chen Hao verfasserin aut Wu Jian verfasserin aut Fan Chuchuan verfasserin aut Zhou Yongming verfasserin aut In BMC Genetics BMC, 2003 13(2012), 1, p 105 (DE-627)326644938 (DE-600)2041497-3 14712156 nnns volume:13 year:2012 number:1, p 105 https://doi.org/10.1186/1471-2156-13-105 kostenfrei https://doaj.org/article/85bfea5ef7684320a737e4f7c315104e kostenfrei http://www.biomedcentral.com/1471-2156/13/105 kostenfrei https://doaj.org/toc/1471-2156 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2012 1, p 105 |
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Cai Guangqin @@aut@@ Yang Qingyong @@aut@@ Yang Qian @@aut@@ Zhao Zhenxing @@aut@@ Chen Hao @@aut@@ Wu Jian @@aut@@ Fan Chuchuan @@aut@@ Zhou Yongming @@aut@@ |
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QH426-470 Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species Brassicaceae Rapeseed <it<Arabidopsis</it< Comparative mapping QTL Map-based cloning Seed weight |
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Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species |
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Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species |
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identification of candidate genes of qtls for seed weight in <it<brassica napus</it< through comparative mapping among <it<arabidopsis</it< and <it<brassica</it< species |
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Identification of candidate genes of QTLs for seed weight in <it<Brassica napus</it< through comparative mapping among <it<Arabidopsis</it< and <it<Brassica</it< species |
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<p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p< |
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<p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p< |
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<p<Abstract</p< <p<Background</p< <p<Map-based cloning of quantitative trait loci (QTLs) in polyploidy crop species remains a challenge due to the complexity of their genome structures. QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p< |
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QTLs for seed weight in <it<B. napus</it< have been identified, but information on candidate genes for identified QTLs of this important trait is still rare.</p< <p<Results</p< <p<In this study, a whole genome genetic linkage map for <it<B. napus</it< was constructed using simple sequence repeat (SSR) markers that covered a genetic distance of 2,126.4 cM with an average distance of 5.36 cM between markers. A procedure was developed to establish colinearity of SSR loci on <it<B. napus</it< with its two progenitor diploid species <it<B. rapa</it< and <it<B. oleracea</it< through extensive bioinformatics analysis. With the aid of <it<B. rapa</it< and <it<B. oleracea</it< genome sequences, the 421 homologous colinear loci deduced from the SSR loci of <it<B. napus</it< were shown to correspond to 398 homologous loci in <it<Arabidopsis thaliana</it<. Through comparative mapping of <it<Arabidopsis</it< and the three <it<Brassica</it< species, 227 homologous genes for seed size/weight were mapped on the <it<B. napus</it< genetic map, establishing the genetic bases for the important agronomic trait in this amphidiploid species. Furthermore, 12 candidate genes underlying 8 QTLs for seed weight were identified, and a gene-specific marker for <it<BnAP2</it< was developed through molecular cloning using the seed weight/size gene distribution map in <it<B. napus</it<.</p< <p<Conclusions</p< <p<Our study showed that it is feasible to identify candidate genes of QTLs using a SSR-based <it<B. napus</it< genetic map through comparative mapping among <it<Arabidopsis</it< and <it<B. napus</it< and its two progenitor species <it<B. rapa</it< and <it<B. oleracea</it<. Identification of candidate genes for seed weight in amphidiploid <it<B. napus</it< will accelerate the process of isolating the mapped QTLs for this important trait, and this approach may be useful for QTL identification of other traits of agronomic significance.</p<</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Brassicaceae</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Rapeseed</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a"><it<Arabidopsis</it<</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Comparative mapping</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">QTL</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Map-based cloning</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Seed weight</subfield></datafield><datafield tag="653" ind1=" " ind2="0"><subfield 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