Population dynamics and genetic connectivity in recent chimpanzee history
Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non...
Ausführliche Beschreibung
Autor*in: |
Claudia Fontsere [verfasserIn] Martin Kuhlwilm [verfasserIn] Carlos Morcillo-Suarez [verfasserIn] Marina Alvarez-Estape [verfasserIn] Jack D. Lester [verfasserIn] Paolo Gratton [verfasserIn] Joshua M. Schmidt [verfasserIn] Paula Dieguez [verfasserIn] Thierry Aebischer [verfasserIn] Paula Álvarez-Varona [verfasserIn] Anthony Agbor [verfasserIn] Samuel Angedakin [verfasserIn] Alfred K. Assumang [verfasserIn] Emmanuel A. Ayimisin [verfasserIn] Emma Bailey [verfasserIn] Donatienne Barubiyo [verfasserIn] Mattia Bessone [verfasserIn] Andrea Carretero-Alonso [verfasserIn] Rebecca Chancellor [verfasserIn] Heather Cohen [verfasserIn] Emmanuel Danquah [verfasserIn] Tobias Deschner [verfasserIn] Andrew Dunn [verfasserIn] Jef Dupain [verfasserIn] Villard E. Egbe [verfasserIn] Olga Feliu [verfasserIn] Annemarie Goedmakers [verfasserIn] Anne-Céline Granjon [verfasserIn] Josephine Head [verfasserIn] Daniela Hedwig [verfasserIn] Veerle Hermans [verfasserIn] R. Adriana Hernandez-Aguilar [verfasserIn] Inaoyom Imong [verfasserIn] Sorrel Jones [verfasserIn] Jessica Junker [verfasserIn] Parag Kadam [verfasserIn] Mike Kaiser [verfasserIn] Mbangi Kambere [verfasserIn] Magloire V. Kambale [verfasserIn] Ammie K. Kalan [verfasserIn] Ivonne Kienast [verfasserIn] Deo Kujirakwinja [verfasserIn] Kevin Langergraber [verfasserIn] Juan Lapuente [verfasserIn] Bradley Larson [verfasserIn] Anne Laudisoit [verfasserIn] Kevin Lee [verfasserIn] Manuel Llana [verfasserIn] Miquel Llorente [verfasserIn] Sergio Marrocoli [verfasserIn] David Morgan [verfasserIn] Felix Mulindahabi [verfasserIn] Mizuki Murai [verfasserIn] Emily Neil [verfasserIn] Sonia Nicholl [verfasserIn] Stuart Nixon [verfasserIn] Emma Normand [verfasserIn] Chris Orbell [verfasserIn] Lucy J. Ormsby [verfasserIn] Liliana Pacheco [verfasserIn] Alex Piel [verfasserIn] Laura Riera [verfasserIn] Martha M. Robbins [verfasserIn] Aaron Rundus [verfasserIn] Crickette Sanz [verfasserIn] Lilah Sciaky [verfasserIn] Volker Sommer [verfasserIn] Fiona A. Stewart [verfasserIn] Nikki Tagg [verfasserIn] Luc Roscelin Tédonzong [verfasserIn] Els Ton [verfasserIn] Joost van Schijndel [verfasserIn] Virginie Vergnes [verfasserIn] Erin G. Wessling [verfasserIn] Jacob Willie [verfasserIn] Roman M. Wittig [verfasserIn] Yisa G. Yuh [verfasserIn] Kyle Yurkiw [verfasserIn] Klaus Zuberbuehler [verfasserIn] Jochen Hecht [verfasserIn] Linda Vigilant [verfasserIn] Christophe Boesch [verfasserIn] Aida M. Andrés [verfasserIn] David A. Hughes [verfasserIn] Hjalmar S. Kühl [verfasserIn] Esther Lizano [verfasserIn] Mimi Arandjelovic [verfasserIn] Tomas Marques-Bonet [verfasserIn] |
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Sprache: |
Englisch |
Erschienen: |
2022 |
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In: Cell Genomics - Elsevier, 2022, 2(2022), 6, Seite 100133- |
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volume:2 ; year:2022 ; number:6 ; pages:100133- |
Links: |
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DOI / URN: |
10.1016/j.xgen.2022.100133 |
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Katalog-ID: |
DOAJ043015972 |
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245 | 1 | 0 | |a Population dynamics and genetic connectivity in recent chimpanzee history |
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520 | |a Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. | ||
650 | 4 | |a chimpanzee | |
650 | 4 | |a non-invasive samples | |
650 | 4 | |a fecal samples | |
650 | 4 | |a hybridization capture | |
650 | 4 | |a population genetics | |
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700 | 0 | |a Martin Kuhlwilm |e verfasserin |4 aut | |
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10.1016/j.xgen.2022.100133 doi (DE-627)DOAJ043015972 (DE-599)DOAJff63277e98a64bba923c777bd418795b DE-627 ger DE-627 rakwb eng QH426-470 RC31-1245 Claudia Fontsere verfasserin aut Population dynamics and genetic connectivity in recent chimpanzee history 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. chimpanzee non-invasive samples fecal samples hybridization capture population genetics conservation genomics Genetics Internal medicine Martin Kuhlwilm verfasserin aut Carlos Morcillo-Suarez verfasserin aut Marina Alvarez-Estape verfasserin aut Jack D. Lester verfasserin aut Paolo Gratton verfasserin aut Joshua M. Schmidt verfasserin aut Paula Dieguez verfasserin aut Thierry Aebischer verfasserin aut Paula Álvarez-Varona verfasserin aut Anthony Agbor verfasserin aut Samuel Angedakin verfasserin aut Alfred K. Assumang verfasserin aut Emmanuel A. Ayimisin verfasserin aut Emma Bailey verfasserin aut Donatienne Barubiyo verfasserin aut Mattia Bessone verfasserin aut Andrea Carretero-Alonso verfasserin aut Rebecca Chancellor verfasserin aut Heather Cohen verfasserin aut Emmanuel Danquah verfasserin aut Tobias Deschner verfasserin aut Andrew Dunn verfasserin aut Jef Dupain verfasserin aut Villard E. Egbe verfasserin aut Olga Feliu verfasserin aut Annemarie Goedmakers verfasserin aut Anne-Céline Granjon verfasserin aut Josephine Head verfasserin aut Daniela Hedwig verfasserin aut Veerle Hermans verfasserin aut R. Adriana Hernandez-Aguilar verfasserin aut Inaoyom Imong verfasserin aut Sorrel Jones verfasserin aut Jessica Junker verfasserin aut Parag Kadam verfasserin aut Mike Kaiser verfasserin aut Mbangi Kambere verfasserin aut Magloire V. Kambale verfasserin aut Ammie K. Kalan verfasserin aut Ivonne Kienast verfasserin aut Deo Kujirakwinja verfasserin aut Kevin Langergraber verfasserin aut Juan Lapuente verfasserin aut Bradley Larson verfasserin aut Anne Laudisoit verfasserin aut Kevin Lee verfasserin aut Manuel Llana verfasserin aut Miquel Llorente verfasserin aut Sergio Marrocoli verfasserin aut David Morgan verfasserin aut Felix Mulindahabi verfasserin aut Mizuki Murai verfasserin aut Emily Neil verfasserin aut Sonia Nicholl verfasserin aut Stuart Nixon verfasserin aut Emma Normand verfasserin aut Chris Orbell verfasserin aut Lucy J. Ormsby verfasserin aut Liliana Pacheco verfasserin aut Alex Piel verfasserin aut Laura Riera verfasserin aut Martha M. Robbins verfasserin aut Aaron Rundus verfasserin aut Crickette Sanz verfasserin aut Lilah Sciaky verfasserin aut Volker Sommer verfasserin aut Fiona A. Stewart verfasserin aut Nikki Tagg verfasserin aut Luc Roscelin Tédonzong verfasserin aut Els Ton verfasserin aut Joost van Schijndel verfasserin aut Virginie Vergnes verfasserin aut Erin G. Wessling verfasserin aut Jacob Willie verfasserin aut Roman M. Wittig verfasserin aut Yisa G. Yuh verfasserin aut Kyle Yurkiw verfasserin aut Klaus Zuberbuehler verfasserin aut Jochen Hecht verfasserin aut Linda Vigilant verfasserin aut Christophe Boesch verfasserin aut Aida M. Andrés verfasserin aut David A. Hughes verfasserin aut Hjalmar S. Kühl verfasserin aut Esther Lizano verfasserin aut Mimi Arandjelovic verfasserin aut Tomas Marques-Bonet verfasserin aut In Cell Genomics Elsevier, 2022 2(2022), 6, Seite 100133- (DE-627)178991650X 2666979X nnns volume:2 year:2022 number:6 pages:100133- https://doi.org/10.1016/j.xgen.2022.100133 kostenfrei https://doaj.org/article/ff63277e98a64bba923c777bd418795b kostenfrei http://www.sciencedirect.com/science/article/pii/S2666979X22000623 kostenfrei https://doaj.org/toc/2666-979X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2110 GBV_ILN_2112 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4393 GBV_ILN_4700 AR 2 2022 6 100133- |
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10.1016/j.xgen.2022.100133 doi (DE-627)DOAJ043015972 (DE-599)DOAJff63277e98a64bba923c777bd418795b DE-627 ger DE-627 rakwb eng QH426-470 RC31-1245 Claudia Fontsere verfasserin aut Population dynamics and genetic connectivity in recent chimpanzee history 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. chimpanzee non-invasive samples fecal samples hybridization capture population genetics conservation genomics Genetics Internal medicine Martin Kuhlwilm verfasserin aut Carlos Morcillo-Suarez verfasserin aut Marina Alvarez-Estape verfasserin aut Jack D. Lester verfasserin aut Paolo Gratton verfasserin aut Joshua M. Schmidt verfasserin aut Paula Dieguez verfasserin aut Thierry Aebischer verfasserin aut Paula Álvarez-Varona verfasserin aut Anthony Agbor verfasserin aut Samuel Angedakin verfasserin aut Alfred K. Assumang verfasserin aut Emmanuel A. Ayimisin verfasserin aut Emma Bailey verfasserin aut Donatienne Barubiyo verfasserin aut Mattia Bessone verfasserin aut Andrea Carretero-Alonso verfasserin aut Rebecca Chancellor verfasserin aut Heather Cohen verfasserin aut Emmanuel Danquah verfasserin aut Tobias Deschner verfasserin aut Andrew Dunn verfasserin aut Jef Dupain verfasserin aut Villard E. Egbe verfasserin aut Olga Feliu verfasserin aut Annemarie Goedmakers verfasserin aut Anne-Céline Granjon verfasserin aut Josephine Head verfasserin aut Daniela Hedwig verfasserin aut Veerle Hermans verfasserin aut R. Adriana Hernandez-Aguilar verfasserin aut Inaoyom Imong verfasserin aut Sorrel Jones verfasserin aut Jessica Junker verfasserin aut Parag Kadam verfasserin aut Mike Kaiser verfasserin aut Mbangi Kambere verfasserin aut Magloire V. Kambale verfasserin aut Ammie K. Kalan verfasserin aut Ivonne Kienast verfasserin aut Deo Kujirakwinja verfasserin aut Kevin Langergraber verfasserin aut Juan Lapuente verfasserin aut Bradley Larson verfasserin aut Anne Laudisoit verfasserin aut Kevin Lee verfasserin aut Manuel Llana verfasserin aut Miquel Llorente verfasserin aut Sergio Marrocoli verfasserin aut David Morgan verfasserin aut Felix Mulindahabi verfasserin aut Mizuki Murai verfasserin aut Emily Neil verfasserin aut Sonia Nicholl verfasserin aut Stuart Nixon verfasserin aut Emma Normand verfasserin aut Chris Orbell verfasserin aut Lucy J. Ormsby verfasserin aut Liliana Pacheco verfasserin aut Alex Piel verfasserin aut Laura Riera verfasserin aut Martha M. Robbins verfasserin aut Aaron Rundus verfasserin aut Crickette Sanz verfasserin aut Lilah Sciaky verfasserin aut Volker Sommer verfasserin aut Fiona A. Stewart verfasserin aut Nikki Tagg verfasserin aut Luc Roscelin Tédonzong verfasserin aut Els Ton verfasserin aut Joost van Schijndel verfasserin aut Virginie Vergnes verfasserin aut Erin G. Wessling verfasserin aut Jacob Willie verfasserin aut Roman M. Wittig verfasserin aut Yisa G. Yuh verfasserin aut Kyle Yurkiw verfasserin aut Klaus Zuberbuehler verfasserin aut Jochen Hecht verfasserin aut Linda Vigilant verfasserin aut Christophe Boesch verfasserin aut Aida M. Andrés verfasserin aut David A. Hughes verfasserin aut Hjalmar S. Kühl verfasserin aut Esther Lizano verfasserin aut Mimi Arandjelovic verfasserin aut Tomas Marques-Bonet verfasserin aut In Cell Genomics Elsevier, 2022 2(2022), 6, Seite 100133- (DE-627)178991650X 2666979X nnns volume:2 year:2022 number:6 pages:100133- https://doi.org/10.1016/j.xgen.2022.100133 kostenfrei https://doaj.org/article/ff63277e98a64bba923c777bd418795b kostenfrei http://www.sciencedirect.com/science/article/pii/S2666979X22000623 kostenfrei https://doaj.org/toc/2666-979X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2110 GBV_ILN_2112 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4393 GBV_ILN_4700 AR 2 2022 6 100133- |
allfields_unstemmed |
10.1016/j.xgen.2022.100133 doi (DE-627)DOAJ043015972 (DE-599)DOAJff63277e98a64bba923c777bd418795b DE-627 ger DE-627 rakwb eng QH426-470 RC31-1245 Claudia Fontsere verfasserin aut Population dynamics and genetic connectivity in recent chimpanzee history 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. chimpanzee non-invasive samples fecal samples hybridization capture population genetics conservation genomics Genetics Internal medicine Martin Kuhlwilm verfasserin aut Carlos Morcillo-Suarez verfasserin aut Marina Alvarez-Estape verfasserin aut Jack D. Lester verfasserin aut Paolo Gratton verfasserin aut Joshua M. Schmidt verfasserin aut Paula Dieguez verfasserin aut Thierry Aebischer verfasserin aut Paula Álvarez-Varona verfasserin aut Anthony Agbor verfasserin aut Samuel Angedakin verfasserin aut Alfred K. Assumang verfasserin aut Emmanuel A. Ayimisin verfasserin aut Emma Bailey verfasserin aut Donatienne Barubiyo verfasserin aut Mattia Bessone verfasserin aut Andrea Carretero-Alonso verfasserin aut Rebecca Chancellor verfasserin aut Heather Cohen verfasserin aut Emmanuel Danquah verfasserin aut Tobias Deschner verfasserin aut Andrew Dunn verfasserin aut Jef Dupain verfasserin aut Villard E. Egbe verfasserin aut Olga Feliu verfasserin aut Annemarie Goedmakers verfasserin aut Anne-Céline Granjon verfasserin aut Josephine Head verfasserin aut Daniela Hedwig verfasserin aut Veerle Hermans verfasserin aut R. Adriana Hernandez-Aguilar verfasserin aut Inaoyom Imong verfasserin aut Sorrel Jones verfasserin aut Jessica Junker verfasserin aut Parag Kadam verfasserin aut Mike Kaiser verfasserin aut Mbangi Kambere verfasserin aut Magloire V. Kambale verfasserin aut Ammie K. Kalan verfasserin aut Ivonne Kienast verfasserin aut Deo Kujirakwinja verfasserin aut Kevin Langergraber verfasserin aut Juan Lapuente verfasserin aut Bradley Larson verfasserin aut Anne Laudisoit verfasserin aut Kevin Lee verfasserin aut Manuel Llana verfasserin aut Miquel Llorente verfasserin aut Sergio Marrocoli verfasserin aut David Morgan verfasserin aut Felix Mulindahabi verfasserin aut Mizuki Murai verfasserin aut Emily Neil verfasserin aut Sonia Nicholl verfasserin aut Stuart Nixon verfasserin aut Emma Normand verfasserin aut Chris Orbell verfasserin aut Lucy J. Ormsby verfasserin aut Liliana Pacheco verfasserin aut Alex Piel verfasserin aut Laura Riera verfasserin aut Martha M. Robbins verfasserin aut Aaron Rundus verfasserin aut Crickette Sanz verfasserin aut Lilah Sciaky verfasserin aut Volker Sommer verfasserin aut Fiona A. Stewart verfasserin aut Nikki Tagg verfasserin aut Luc Roscelin Tédonzong verfasserin aut Els Ton verfasserin aut Joost van Schijndel verfasserin aut Virginie Vergnes verfasserin aut Erin G. Wessling verfasserin aut Jacob Willie verfasserin aut Roman M. Wittig verfasserin aut Yisa G. Yuh verfasserin aut Kyle Yurkiw verfasserin aut Klaus Zuberbuehler verfasserin aut Jochen Hecht verfasserin aut Linda Vigilant verfasserin aut Christophe Boesch verfasserin aut Aida M. Andrés verfasserin aut David A. Hughes verfasserin aut Hjalmar S. Kühl verfasserin aut Esther Lizano verfasserin aut Mimi Arandjelovic verfasserin aut Tomas Marques-Bonet verfasserin aut In Cell Genomics Elsevier, 2022 2(2022), 6, Seite 100133- (DE-627)178991650X 2666979X nnns volume:2 year:2022 number:6 pages:100133- https://doi.org/10.1016/j.xgen.2022.100133 kostenfrei https://doaj.org/article/ff63277e98a64bba923c777bd418795b kostenfrei http://www.sciencedirect.com/science/article/pii/S2666979X22000623 kostenfrei https://doaj.org/toc/2666-979X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2110 GBV_ILN_2112 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4393 GBV_ILN_4700 AR 2 2022 6 100133- |
allfieldsGer |
10.1016/j.xgen.2022.100133 doi (DE-627)DOAJ043015972 (DE-599)DOAJff63277e98a64bba923c777bd418795b DE-627 ger DE-627 rakwb eng QH426-470 RC31-1245 Claudia Fontsere verfasserin aut Population dynamics and genetic connectivity in recent chimpanzee history 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. chimpanzee non-invasive samples fecal samples hybridization capture population genetics conservation genomics Genetics Internal medicine Martin Kuhlwilm verfasserin aut Carlos Morcillo-Suarez verfasserin aut Marina Alvarez-Estape verfasserin aut Jack D. Lester verfasserin aut Paolo Gratton verfasserin aut Joshua M. Schmidt verfasserin aut Paula Dieguez verfasserin aut Thierry Aebischer verfasserin aut Paula Álvarez-Varona verfasserin aut Anthony Agbor verfasserin aut Samuel Angedakin verfasserin aut Alfred K. Assumang verfasserin aut Emmanuel A. Ayimisin verfasserin aut Emma Bailey verfasserin aut Donatienne Barubiyo verfasserin aut Mattia Bessone verfasserin aut Andrea Carretero-Alonso verfasserin aut Rebecca Chancellor verfasserin aut Heather Cohen verfasserin aut Emmanuel Danquah verfasserin aut Tobias Deschner verfasserin aut Andrew Dunn verfasserin aut Jef Dupain verfasserin aut Villard E. Egbe verfasserin aut Olga Feliu verfasserin aut Annemarie Goedmakers verfasserin aut Anne-Céline Granjon verfasserin aut Josephine Head verfasserin aut Daniela Hedwig verfasserin aut Veerle Hermans verfasserin aut R. Adriana Hernandez-Aguilar verfasserin aut Inaoyom Imong verfasserin aut Sorrel Jones verfasserin aut Jessica Junker verfasserin aut Parag Kadam verfasserin aut Mike Kaiser verfasserin aut Mbangi Kambere verfasserin aut Magloire V. Kambale verfasserin aut Ammie K. Kalan verfasserin aut Ivonne Kienast verfasserin aut Deo Kujirakwinja verfasserin aut Kevin Langergraber verfasserin aut Juan Lapuente verfasserin aut Bradley Larson verfasserin aut Anne Laudisoit verfasserin aut Kevin Lee verfasserin aut Manuel Llana verfasserin aut Miquel Llorente verfasserin aut Sergio Marrocoli verfasserin aut David Morgan verfasserin aut Felix Mulindahabi verfasserin aut Mizuki Murai verfasserin aut Emily Neil verfasserin aut Sonia Nicholl verfasserin aut Stuart Nixon verfasserin aut Emma Normand verfasserin aut Chris Orbell verfasserin aut Lucy J. Ormsby verfasserin aut Liliana Pacheco verfasserin aut Alex Piel verfasserin aut Laura Riera verfasserin aut Martha M. Robbins verfasserin aut Aaron Rundus verfasserin aut Crickette Sanz verfasserin aut Lilah Sciaky verfasserin aut Volker Sommer verfasserin aut Fiona A. Stewart verfasserin aut Nikki Tagg verfasserin aut Luc Roscelin Tédonzong verfasserin aut Els Ton verfasserin aut Joost van Schijndel verfasserin aut Virginie Vergnes verfasserin aut Erin G. Wessling verfasserin aut Jacob Willie verfasserin aut Roman M. Wittig verfasserin aut Yisa G. Yuh verfasserin aut Kyle Yurkiw verfasserin aut Klaus Zuberbuehler verfasserin aut Jochen Hecht verfasserin aut Linda Vigilant verfasserin aut Christophe Boesch verfasserin aut Aida M. Andrés verfasserin aut David A. Hughes verfasserin aut Hjalmar S. Kühl verfasserin aut Esther Lizano verfasserin aut Mimi Arandjelovic verfasserin aut Tomas Marques-Bonet verfasserin aut In Cell Genomics Elsevier, 2022 2(2022), 6, Seite 100133- (DE-627)178991650X 2666979X nnns volume:2 year:2022 number:6 pages:100133- https://doi.org/10.1016/j.xgen.2022.100133 kostenfrei https://doaj.org/article/ff63277e98a64bba923c777bd418795b kostenfrei http://www.sciencedirect.com/science/article/pii/S2666979X22000623 kostenfrei https://doaj.org/toc/2666-979X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2110 GBV_ILN_2112 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4393 GBV_ILN_4700 AR 2 2022 6 100133- |
allfieldsSound |
10.1016/j.xgen.2022.100133 doi (DE-627)DOAJ043015972 (DE-599)DOAJff63277e98a64bba923c777bd418795b DE-627 ger DE-627 rakwb eng QH426-470 RC31-1245 Claudia Fontsere verfasserin aut Population dynamics and genetic connectivity in recent chimpanzee history 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. chimpanzee non-invasive samples fecal samples hybridization capture population genetics conservation genomics Genetics Internal medicine Martin Kuhlwilm verfasserin aut Carlos Morcillo-Suarez verfasserin aut Marina Alvarez-Estape verfasserin aut Jack D. Lester verfasserin aut Paolo Gratton verfasserin aut Joshua M. Schmidt verfasserin aut Paula Dieguez verfasserin aut Thierry Aebischer verfasserin aut Paula Álvarez-Varona verfasserin aut Anthony Agbor verfasserin aut Samuel Angedakin verfasserin aut Alfred K. Assumang verfasserin aut Emmanuel A. Ayimisin verfasserin aut Emma Bailey verfasserin aut Donatienne Barubiyo verfasserin aut Mattia Bessone verfasserin aut Andrea Carretero-Alonso verfasserin aut Rebecca Chancellor verfasserin aut Heather Cohen verfasserin aut Emmanuel Danquah verfasserin aut Tobias Deschner verfasserin aut Andrew Dunn verfasserin aut Jef Dupain verfasserin aut Villard E. Egbe verfasserin aut Olga Feliu verfasserin aut Annemarie Goedmakers verfasserin aut Anne-Céline Granjon verfasserin aut Josephine Head verfasserin aut Daniela Hedwig verfasserin aut Veerle Hermans verfasserin aut R. Adriana Hernandez-Aguilar verfasserin aut Inaoyom Imong verfasserin aut Sorrel Jones verfasserin aut Jessica Junker verfasserin aut Parag Kadam verfasserin aut Mike Kaiser verfasserin aut Mbangi Kambere verfasserin aut Magloire V. Kambale verfasserin aut Ammie K. Kalan verfasserin aut Ivonne Kienast verfasserin aut Deo Kujirakwinja verfasserin aut Kevin Langergraber verfasserin aut Juan Lapuente verfasserin aut Bradley Larson verfasserin aut Anne Laudisoit verfasserin aut Kevin Lee verfasserin aut Manuel Llana verfasserin aut Miquel Llorente verfasserin aut Sergio Marrocoli verfasserin aut David Morgan verfasserin aut Felix Mulindahabi verfasserin aut Mizuki Murai verfasserin aut Emily Neil verfasserin aut Sonia Nicholl verfasserin aut Stuart Nixon verfasserin aut Emma Normand verfasserin aut Chris Orbell verfasserin aut Lucy J. Ormsby verfasserin aut Liliana Pacheco verfasserin aut Alex Piel verfasserin aut Laura Riera verfasserin aut Martha M. Robbins verfasserin aut Aaron Rundus verfasserin aut Crickette Sanz verfasserin aut Lilah Sciaky verfasserin aut Volker Sommer verfasserin aut Fiona A. Stewart verfasserin aut Nikki Tagg verfasserin aut Luc Roscelin Tédonzong verfasserin aut Els Ton verfasserin aut Joost van Schijndel verfasserin aut Virginie Vergnes verfasserin aut Erin G. Wessling verfasserin aut Jacob Willie verfasserin aut Roman M. Wittig verfasserin aut Yisa G. Yuh verfasserin aut Kyle Yurkiw verfasserin aut Klaus Zuberbuehler verfasserin aut Jochen Hecht verfasserin aut Linda Vigilant verfasserin aut Christophe Boesch verfasserin aut Aida M. Andrés verfasserin aut David A. Hughes verfasserin aut Hjalmar S. Kühl verfasserin aut Esther Lizano verfasserin aut Mimi Arandjelovic verfasserin aut Tomas Marques-Bonet verfasserin aut In Cell Genomics Elsevier, 2022 2(2022), 6, Seite 100133- (DE-627)178991650X 2666979X nnns volume:2 year:2022 number:6 pages:100133- https://doi.org/10.1016/j.xgen.2022.100133 kostenfrei https://doaj.org/article/ff63277e98a64bba923c777bd418795b kostenfrei http://www.sciencedirect.com/science/article/pii/S2666979X22000623 kostenfrei https://doaj.org/toc/2666-979X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2110 GBV_ILN_2112 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4393 GBV_ILN_4700 AR 2 2022 6 100133- |
language |
English |
source |
In Cell Genomics 2(2022), 6, Seite 100133- volume:2 year:2022 number:6 pages:100133- |
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In Cell Genomics 2(2022), 6, Seite 100133- volume:2 year:2022 number:6 pages:100133- |
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Article |
institution |
findex.gbv.de |
topic_facet |
chimpanzee non-invasive samples fecal samples hybridization capture population genetics conservation genomics Genetics Internal medicine |
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container_title |
Cell Genomics |
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Claudia Fontsere @@aut@@ Martin Kuhlwilm @@aut@@ Carlos Morcillo-Suarez @@aut@@ Marina Alvarez-Estape @@aut@@ Jack D. Lester @@aut@@ Paolo Gratton @@aut@@ Joshua M. Schmidt @@aut@@ Paula Dieguez @@aut@@ Thierry Aebischer @@aut@@ Paula Álvarez-Varona @@aut@@ Anthony Agbor @@aut@@ Samuel Angedakin @@aut@@ Alfred K. Assumang @@aut@@ Emmanuel A. Ayimisin @@aut@@ Emma Bailey @@aut@@ Donatienne Barubiyo @@aut@@ Mattia Bessone @@aut@@ Andrea Carretero-Alonso @@aut@@ Rebecca Chancellor @@aut@@ Heather Cohen @@aut@@ Emmanuel Danquah @@aut@@ Tobias Deschner @@aut@@ Andrew Dunn @@aut@@ Jef Dupain @@aut@@ Villard E. Egbe @@aut@@ Olga Feliu @@aut@@ Annemarie Goedmakers @@aut@@ Anne-Céline Granjon @@aut@@ Josephine Head @@aut@@ Daniela Hedwig @@aut@@ Veerle Hermans @@aut@@ R. Adriana Hernandez-Aguilar @@aut@@ Inaoyom Imong @@aut@@ Sorrel Jones @@aut@@ Jessica Junker @@aut@@ Parag Kadam @@aut@@ Mike Kaiser @@aut@@ Mbangi Kambere @@aut@@ Magloire V. Kambale @@aut@@ Ammie K. Kalan @@aut@@ Ivonne Kienast @@aut@@ Deo Kujirakwinja @@aut@@ Kevin Langergraber @@aut@@ Juan Lapuente @@aut@@ Bradley Larson @@aut@@ Anne Laudisoit @@aut@@ Kevin Lee @@aut@@ Manuel Llana @@aut@@ Miquel Llorente @@aut@@ Sergio Marrocoli @@aut@@ David Morgan @@aut@@ Felix Mulindahabi @@aut@@ Mizuki Murai @@aut@@ Emily Neil @@aut@@ Sonia Nicholl @@aut@@ Stuart Nixon @@aut@@ Emma Normand @@aut@@ Chris Orbell @@aut@@ Lucy J. Ormsby @@aut@@ Liliana Pacheco @@aut@@ Alex Piel @@aut@@ Laura Riera @@aut@@ Martha M. Robbins @@aut@@ Aaron Rundus @@aut@@ Crickette Sanz @@aut@@ Lilah Sciaky @@aut@@ Volker Sommer @@aut@@ Fiona A. Stewart @@aut@@ Nikki Tagg @@aut@@ Luc Roscelin Tédonzong @@aut@@ Els Ton @@aut@@ Joost van Schijndel @@aut@@ Virginie Vergnes @@aut@@ Erin G. Wessling @@aut@@ Jacob Willie @@aut@@ Roman M. Wittig @@aut@@ Yisa G. Yuh @@aut@@ Kyle Yurkiw @@aut@@ Klaus Zuberbuehler @@aut@@ Jochen Hecht @@aut@@ Linda Vigilant @@aut@@ Christophe Boesch @@aut@@ Aida M. Andrés @@aut@@ David A. Hughes @@aut@@ Hjalmar S. Kühl @@aut@@ Esther Lizano @@aut@@ Mimi Arandjelovic @@aut@@ Tomas Marques-Bonet @@aut@@ |
publishDateDaySort_date |
2022-01-01T00:00:00Z |
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178991650X |
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DOAJ043015972 |
language_de |
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Claudia Fontsere Martin Kuhlwilm Carlos Morcillo-Suarez Marina Alvarez-Estape Jack D. Lester Paolo Gratton Joshua M. Schmidt Paula Dieguez Thierry Aebischer Paula Álvarez-Varona Anthony Agbor Samuel Angedakin Alfred K. Assumang Emmanuel A. Ayimisin Emma Bailey Donatienne Barubiyo Mattia Bessone Andrea Carretero-Alonso Rebecca Chancellor Heather Cohen Emmanuel Danquah Tobias Deschner Andrew Dunn Jef Dupain Villard E. Egbe Olga Feliu Annemarie Goedmakers Anne-Céline Granjon Josephine Head Daniela Hedwig Veerle Hermans R. Adriana Hernandez-Aguilar Inaoyom Imong Sorrel Jones Jessica Junker Parag Kadam Mike Kaiser Mbangi Kambere Magloire V. Kambale Ammie K. Kalan Ivonne Kienast Deo Kujirakwinja Kevin Langergraber Juan Lapuente Bradley Larson Anne Laudisoit Kevin Lee Manuel Llana Miquel Llorente Sergio Marrocoli David Morgan Felix Mulindahabi Mizuki Murai Emily Neil Sonia Nicholl Stuart Nixon Emma Normand Chris Orbell Lucy J. Ormsby Liliana Pacheco Alex Piel Laura Riera Martha M. Robbins Aaron Rundus Crickette Sanz Lilah Sciaky Volker Sommer Fiona A. Stewart Nikki Tagg Luc Roscelin Tédonzong Els Ton Joost van Schijndel Virginie Vergnes Erin G. Wessling Jacob Willie Roman M. Wittig Yisa G. Yuh Kyle Yurkiw Klaus Zuberbuehler Jochen Hecht Linda Vigilant Christophe Boesch Aida M. Andrés David A. Hughes Hjalmar S. Kühl Esther Lizano Mimi Arandjelovic Tomas Marques-Bonet |
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population dynamics and genetic connectivity in recent chimpanzee history |
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Population dynamics and genetic connectivity in recent chimpanzee history |
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Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. |
abstractGer |
Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. |
abstract_unstemmed |
Summary: Knowledge on the population history of endangered species is critical for conservation, but whole-genome data on chimpanzees (Pan troglodytes) is geographically sparse. Here, we produced the first non-invasive geolocalized catalog of genomic diversity by capturing chromosome 21 from 828 non-invasive samples collected at 48 sampling sites across Africa. The four recognized subspecies show clear genetic differentiation correlating with known barriers, while previously undescribed genetic exchange suggests that these have been permeable on a local scale. We obtained a detailed reconstruction of population stratification and fine-scale patterns of isolation, migration, and connectivity, including a comprehensive picture of admixture with bonobos (Pan paniscus). Unlike humans, chimpanzees did not experience extended episodes of long-distance migrations, which might have limited cultural transmission. Finally, based on local rare variation, we implement a fine-grained geolocalization approach demonstrating improved precision in determining the origin of confiscated chimpanzees. |
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Population dynamics and genetic connectivity in recent chimpanzee history |
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https://doi.org/10.1016/j.xgen.2022.100133 https://doaj.org/article/ff63277e98a64bba923c777bd418795b http://www.sciencedirect.com/science/article/pii/S2666979X22000623 https://doaj.org/toc/2666-979X |
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Martin Kuhlwilm Carlos Morcillo-Suarez Marina Alvarez-Estape Jack D. Lester Paolo Gratton Joshua M. Schmidt Paula Dieguez Thierry Aebischer Paula Álvarez-Varona Anthony Agbor Samuel Angedakin Alfred K. Assumang Emmanuel A. Ayimisin Emma Bailey Donatienne Barubiyo Mattia Bessone Andrea Carretero-Alonso Rebecca Chancellor Heather Cohen Emmanuel Danquah Tobias Deschner Andrew Dunn Jef Dupain Villard E. Egbe Olga Feliu Annemarie Goedmakers Anne-Céline Granjon Josephine Head Daniela Hedwig Veerle Hermans R. Adriana Hernandez-Aguilar Inaoyom Imong Sorrel Jones Jessica Junker Parag Kadam Mike Kaiser Mbangi Kambere Magloire V. Kambale Ammie K. Kalan Ivonne Kienast Deo Kujirakwinja Kevin Langergraber Juan Lapuente Bradley Larson Anne Laudisoit Kevin Lee Manuel Llana Miquel Llorente Sergio Marrocoli David Morgan Felix Mulindahabi Mizuki Murai Emily Neil Sonia Nicholl Stuart Nixon Emma Normand Chris Orbell Lucy J. Ormsby Liliana Pacheco Alex Piel Laura Riera Martha M. Robbins Aaron Rundus Crickette Sanz Lilah Sciaky Volker Sommer Fiona A. Stewart Nikki Tagg Luc Roscelin Tédonzong Els Ton Joost van Schijndel Virginie Vergnes Erin G. Wessling Jacob Willie Roman M. Wittig Yisa G. Yuh Kyle Yurkiw Klaus Zuberbuehler Jochen Hecht Linda Vigilant Christophe Boesch Aida M. Andrés David A. Hughes Hjalmar S. Kühl Esther Lizano Mimi Arandjelovic Tomas Marques-Bonet |
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Martin Kuhlwilm Carlos Morcillo-Suarez Marina Alvarez-Estape Jack D. Lester Paolo Gratton Joshua M. Schmidt Paula Dieguez Thierry Aebischer Paula Álvarez-Varona Anthony Agbor Samuel Angedakin Alfred K. Assumang Emmanuel A. Ayimisin Emma Bailey Donatienne Barubiyo Mattia Bessone Andrea Carretero-Alonso Rebecca Chancellor Heather Cohen Emmanuel Danquah Tobias Deschner Andrew Dunn Jef Dupain Villard E. Egbe Olga Feliu Annemarie Goedmakers Anne-Céline Granjon Josephine Head Daniela Hedwig Veerle Hermans R. Adriana Hernandez-Aguilar Inaoyom Imong Sorrel Jones Jessica Junker Parag Kadam Mike Kaiser Mbangi Kambere Magloire V. Kambale Ammie K. Kalan Ivonne Kienast Deo Kujirakwinja Kevin Langergraber Juan Lapuente Bradley Larson Anne Laudisoit Kevin Lee Manuel Llana Miquel Llorente Sergio Marrocoli David Morgan Felix Mulindahabi Mizuki Murai Emily Neil Sonia Nicholl Stuart Nixon Emma Normand Chris Orbell Lucy J. Ormsby Liliana Pacheco Alex Piel Laura Riera Martha M. Robbins Aaron Rundus Crickette Sanz Lilah Sciaky Volker Sommer Fiona A. Stewart Nikki Tagg Luc Roscelin Tédonzong Els Ton Joost van Schijndel Virginie Vergnes Erin G. Wessling Jacob Willie Roman M. Wittig Yisa G. Yuh Kyle Yurkiw Klaus Zuberbuehler Jochen Hecht Linda Vigilant Christophe Boesch Aida M. Andrés David A. Hughes Hjalmar S. Kühl Esther Lizano Mimi Arandjelovic Tomas Marques-Bonet |
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10.1016/j.xgen.2022.100133 |
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up_date |
2024-07-03T15:14:56.504Z |
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