Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2)

Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the function...
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Autor*in:	Nadim Ferdous [verfasserIn] Mahjerin Nasrin Reza [verfasserIn] Md. Tabassum Hossain Emon [verfasserIn] Md. Shariful Islam [verfasserIn] A. K. M. Mohiuddin [verfasserIn] Mohammad Uzzal Hossain [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2020

Schlagwörter:	genome hypothetical protein modeling hydrolases

Übergeordnetes Werk:	In: Genomics & Informatics - Korea Genome Organization, 2017, 18(2020), 3, p e28
Übergeordnetes Werk:	volume:18 ; year:2020 ; number:3, p e28

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.5808/GI.2020.18.3.e28

Katalog-ID:	DOAJ045262128

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520			\|a Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. coelicolor. Several bioinformatics tools were employed to predict the structure and function of this protein. Sequence similarity was searched through the available bioinformatics databases to find out the homologous protein. The secondary and tertiary structure were predicted and further validated with quality assessment tools. Furthermore, the active site and the interacting proteins were also explored with the utilization of CASTp and STRING server. The hypothetical protein showed the important biological activity having with two functional domain including POD-like_MBL-fold and rhodanese homology domain. The functional annotation exposed that the selected hypothetical protein could show the hydrolase activity. Furthermore, protein-protein interactions of selected hypothetical protein revealed several functional partners those have the significant role for the bacterial survival. At last, the current study depicts that the annotated hypothetical protein is linked with hydrolase activity which might be of great interest to the further research in bacterial genetics.
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912			\|a GBV_ILN_31
912			\|a GBV_ILN_39
912			\|a GBV_ILN_40
912			\|a GBV_ILN_60
912			\|a GBV_ILN_62
912			\|a GBV_ILN_63
912			\|a GBV_ILN_65
912			\|a GBV_ILN_69
912			\|a GBV_ILN_70
912			\|a GBV_ILN_73
912			\|a GBV_ILN_74
912			\|a GBV_ILN_95
912			\|a GBV_ILN_105
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912			\|a GBV_ILN_151
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912			\|a GBV_ILN_170
912			\|a GBV_ILN_213
912			\|a GBV_ILN_230
912			\|a GBV_ILN_285
912			\|a GBV_ILN_293
912			\|a GBV_ILN_370
912			\|a GBV_ILN_602
912			\|a GBV_ILN_2014
912			\|a GBV_ILN_4012
912			\|a GBV_ILN_4037
912			\|a GBV_ILN_4112
912			\|a GBV_ILN_4125
912			\|a GBV_ILN_4126
912			\|a GBV_ILN_4249
912			\|a GBV_ILN_4305
912			\|a GBV_ILN_4306
912			\|a GBV_ILN_4307
912			\|a GBV_ILN_4313
912			\|a GBV_ILN_4322
912			\|a GBV_ILN_4323
912			\|a GBV_ILN_4324
912			\|a GBV_ILN_4325
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952			\|d 18 \|j 2020 \|e 3, p e28

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author_variant	n f nf m n r mnr m t h e mthe m s i msi a k m m akmm m u h muh
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allfields	10.5808/GI.2020.18.3.e28 doi (DE-627)DOAJ045262128 (DE-599)DOAJd2784abd36f1489e9054e0781a84a5bb DE-627 ger DE-627 rakwb eng QH426-470 Nadim Ferdous verfasserin aut Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. coelicolor. Several bioinformatics tools were employed to predict the structure and function of this protein. Sequence similarity was searched through the available bioinformatics databases to find out the homologous protein. The secondary and tertiary structure were predicted and further validated with quality assessment tools. Furthermore, the active site and the interacting proteins were also explored with the utilization of CASTp and STRING server. The hypothetical protein showed the important biological activity having with two functional domain including POD-like_MBL-fold and rhodanese homology domain. The functional annotation exposed that the selected hypothetical protein could show the hydrolase activity. Furthermore, protein-protein interactions of selected hypothetical protein revealed several functional partners those have the significant role for the bacterial survival. At last, the current study depicts that the annotated hypothetical protein is linked with hydrolase activity which might be of great interest to the further research in bacterial genetics. genome hypothetical protein modeling hydrolases Genetics Mahjerin Nasrin Reza verfasserin aut Md. Tabassum Hossain Emon verfasserin aut Md. Shariful Islam verfasserin aut A. K. M. Mohiuddin verfasserin aut Mohammad Uzzal Hossain verfasserin aut In Genomics & Informatics Korea Genome Organization, 2017 18(2020), 3, p e28 (DE-627)812496515 (DE-600)2802682-2 22340742 nnns volume:18 year:2020 number:3, p e28 https://doi.org/10.5808/GI.2020.18.3.e28 kostenfrei https://doaj.org/article/d2784abd36f1489e9054e0781a84a5bb kostenfrei http://genominfo.org/upload/pdf/gi-2020-18-3-e28.pdf kostenfrei https://doaj.org/toc/2234-0742 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 18 2020 3, p e28
spelling	10.5808/GI.2020.18.3.e28 doi (DE-627)DOAJ045262128 (DE-599)DOAJd2784abd36f1489e9054e0781a84a5bb DE-627 ger DE-627 rakwb eng QH426-470 Nadim Ferdous verfasserin aut Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. coelicolor. Several bioinformatics tools were employed to predict the structure and function of this protein. Sequence similarity was searched through the available bioinformatics databases to find out the homologous protein. The secondary and tertiary structure were predicted and further validated with quality assessment tools. Furthermore, the active site and the interacting proteins were also explored with the utilization of CASTp and STRING server. The hypothetical protein showed the important biological activity having with two functional domain including POD-like_MBL-fold and rhodanese homology domain. The functional annotation exposed that the selected hypothetical protein could show the hydrolase activity. Furthermore, protein-protein interactions of selected hypothetical protein revealed several functional partners those have the significant role for the bacterial survival. At last, the current study depicts that the annotated hypothetical protein is linked with hydrolase activity which might be of great interest to the further research in bacterial genetics. genome hypothetical protein modeling hydrolases Genetics Mahjerin Nasrin Reza verfasserin aut Md. Tabassum Hossain Emon verfasserin aut Md. Shariful Islam verfasserin aut A. K. M. Mohiuddin verfasserin aut Mohammad Uzzal Hossain verfasserin aut In Genomics & Informatics Korea Genome Organization, 2017 18(2020), 3, p e28 (DE-627)812496515 (DE-600)2802682-2 22340742 nnns volume:18 year:2020 number:3, p e28 https://doi.org/10.5808/GI.2020.18.3.e28 kostenfrei https://doaj.org/article/d2784abd36f1489e9054e0781a84a5bb kostenfrei http://genominfo.org/upload/pdf/gi-2020-18-3-e28.pdf kostenfrei https://doaj.org/toc/2234-0742 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 18 2020 3, p e28
allfields_unstemmed	10.5808/GI.2020.18.3.e28 doi (DE-627)DOAJ045262128 (DE-599)DOAJd2784abd36f1489e9054e0781a84a5bb DE-627 ger DE-627 rakwb eng QH426-470 Nadim Ferdous verfasserin aut Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. coelicolor. Several bioinformatics tools were employed to predict the structure and function of this protein. Sequence similarity was searched through the available bioinformatics databases to find out the homologous protein. The secondary and tertiary structure were predicted and further validated with quality assessment tools. Furthermore, the active site and the interacting proteins were also explored with the utilization of CASTp and STRING server. The hypothetical protein showed the important biological activity having with two functional domain including POD-like_MBL-fold and rhodanese homology domain. The functional annotation exposed that the selected hypothetical protein could show the hydrolase activity. Furthermore, protein-protein interactions of selected hypothetical protein revealed several functional partners those have the significant role for the bacterial survival. At last, the current study depicts that the annotated hypothetical protein is linked with hydrolase activity which might be of great interest to the further research in bacterial genetics. genome hypothetical protein modeling hydrolases Genetics Mahjerin Nasrin Reza verfasserin aut Md. Tabassum Hossain Emon verfasserin aut Md. Shariful Islam verfasserin aut A. K. M. Mohiuddin verfasserin aut Mohammad Uzzal Hossain verfasserin aut In Genomics & Informatics Korea Genome Organization, 2017 18(2020), 3, p e28 (DE-627)812496515 (DE-600)2802682-2 22340742 nnns volume:18 year:2020 number:3, p e28 https://doi.org/10.5808/GI.2020.18.3.e28 kostenfrei https://doaj.org/article/d2784abd36f1489e9054e0781a84a5bb kostenfrei http://genominfo.org/upload/pdf/gi-2020-18-3-e28.pdf kostenfrei https://doaj.org/toc/2234-0742 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 18 2020 3, p e28
allfieldsGer	10.5808/GI.2020.18.3.e28 doi (DE-627)DOAJ045262128 (DE-599)DOAJd2784abd36f1489e9054e0781a84a5bb DE-627 ger DE-627 rakwb eng QH426-470 Nadim Ferdous verfasserin aut Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. coelicolor. Several bioinformatics tools were employed to predict the structure and function of this protein. Sequence similarity was searched through the available bioinformatics databases to find out the homologous protein. The secondary and tertiary structure were predicted and further validated with quality assessment tools. Furthermore, the active site and the interacting proteins were also explored with the utilization of CASTp and STRING server. The hypothetical protein showed the important biological activity having with two functional domain including POD-like_MBL-fold and rhodanese homology domain. The functional annotation exposed that the selected hypothetical protein could show the hydrolase activity. Furthermore, protein-protein interactions of selected hypothetical protein revealed several functional partners those have the significant role for the bacterial survival. At last, the current study depicts that the annotated hypothetical protein is linked with hydrolase activity which might be of great interest to the further research in bacterial genetics. genome hypothetical protein modeling hydrolases Genetics Mahjerin Nasrin Reza verfasserin aut Md. Tabassum Hossain Emon verfasserin aut Md. Shariful Islam verfasserin aut A. K. M. Mohiuddin verfasserin aut Mohammad Uzzal Hossain verfasserin aut In Genomics & Informatics Korea Genome Organization, 2017 18(2020), 3, p e28 (DE-627)812496515 (DE-600)2802682-2 22340742 nnns volume:18 year:2020 number:3, p e28 https://doi.org/10.5808/GI.2020.18.3.e28 kostenfrei https://doaj.org/article/d2784abd36f1489e9054e0781a84a5bb kostenfrei http://genominfo.org/upload/pdf/gi-2020-18-3-e28.pdf kostenfrei https://doaj.org/toc/2234-0742 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 18 2020 3, p e28
allfieldsSound	10.5808/GI.2020.18.3.e28 doi (DE-627)DOAJ045262128 (DE-599)DOAJd2784abd36f1489e9054e0781a84a5bb DE-627 ger DE-627 rakwb eng QH426-470 Nadim Ferdous verfasserin aut Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2) 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. coelicolor. Several bioinformatics tools were employed to predict the structure and function of this protein. Sequence similarity was searched through the available bioinformatics databases to find out the homologous protein. The secondary and tertiary structure were predicted and further validated with quality assessment tools. Furthermore, the active site and the interacting proteins were also explored with the utilization of CASTp and STRING server. The hypothetical protein showed the important biological activity having with two functional domain including POD-like_MBL-fold and rhodanese homology domain. The functional annotation exposed that the selected hypothetical protein could show the hydrolase activity. Furthermore, protein-protein interactions of selected hypothetical protein revealed several functional partners those have the significant role for the bacterial survival. At last, the current study depicts that the annotated hypothetical protein is linked with hydrolase activity which might be of great interest to the further research in bacterial genetics. genome hypothetical protein modeling hydrolases Genetics Mahjerin Nasrin Reza verfasserin aut Md. Tabassum Hossain Emon verfasserin aut Md. Shariful Islam verfasserin aut A. K. M. Mohiuddin verfasserin aut Mohammad Uzzal Hossain verfasserin aut In Genomics & Informatics Korea Genome Organization, 2017 18(2020), 3, p e28 (DE-627)812496515 (DE-600)2802682-2 22340742 nnns volume:18 year:2020 number:3, p e28 https://doi.org/10.5808/GI.2020.18.3.e28 kostenfrei https://doaj.org/article/d2784abd36f1489e9054e0781a84a5bb kostenfrei http://genominfo.org/upload/pdf/gi-2020-18-3-e28.pdf kostenfrei https://doaj.org/toc/2234-0742 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 18 2020 3, p e28
language	English
source	In Genomics & Informatics 18(2020), 3, p e28 volume:18 year:2020 number:3, p e28
sourceStr	In Genomics & Informatics 18(2020), 3, p e28 volume:18 year:2020 number:3, p e28
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	genome hypothetical protein modeling hydrolases Genetics
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container_title	Genomics & Informatics
authorswithroles_txt_mv	Nadim Ferdous @@aut@@ Mahjerin Nasrin Reza @@aut@@ Md. Tabassum Hossain Emon @@aut@@ Md. Shariful Islam @@aut@@ A. K. M. Mohiuddin @@aut@@ Mohammad Uzzal Hossain @@aut@@
publishDateDaySort_date	2020-01-01T00:00:00Z
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callnumber-first	Q - Science
author	Nadim Ferdous
spellingShingle	Nadim Ferdous misc QH426-470 misc genome misc hypothetical protein misc modeling misc hydrolases misc Genetics Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2)
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topic_title	QH426-470 Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2) genome hypothetical protein modeling hydrolases
topic	misc QH426-470 misc genome misc hypothetical protein misc modeling misc hydrolases misc Genetics
topic_unstemmed	misc QH426-470 misc genome misc hypothetical protein misc modeling misc hydrolases misc Genetics
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title	Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2)
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title_full	Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2)
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author_browse	Nadim Ferdous Mahjerin Nasrin Reza Md. Tabassum Hossain Emon Md. Shariful Islam A. K. M. Mohiuddin Mohammad Uzzal Hossain
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title_sort	molecular characterization and functional annotation of a hypothetical protein (sco0618) of a3(2)
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title_auth	Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2)
abstract	Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. coelicolor. Several bioinformatics tools were employed to predict the structure and function of this protein. Sequence similarity was searched through the available bioinformatics databases to find out the homologous protein. The secondary and tertiary structure were predicted and further validated with quality assessment tools. Furthermore, the active site and the interacting proteins were also explored with the utilization of CASTp and STRING server. The hypothetical protein showed the important biological activity having with two functional domain including POD-like_MBL-fold and rhodanese homology domain. The functional annotation exposed that the selected hypothetical protein could show the hydrolase activity. Furthermore, protein-protein interactions of selected hypothetical protein revealed several functional partners those have the significant role for the bacterial survival. At last, the current study depicts that the annotated hypothetical protein is linked with hydrolase activity which might be of great interest to the further research in bacterial genetics.
abstractGer	Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. coelicolor. Several bioinformatics tools were employed to predict the structure and function of this protein. Sequence similarity was searched through the available bioinformatics databases to find out the homologous protein. The secondary and tertiary structure were predicted and further validated with quality assessment tools. Furthermore, the active site and the interacting proteins were also explored with the utilization of CASTp and STRING server. The hypothetical protein showed the important biological activity having with two functional domain including POD-like_MBL-fold and rhodanese homology domain. The functional annotation exposed that the selected hypothetical protein could show the hydrolase activity. Furthermore, protein-protein interactions of selected hypothetical protein revealed several functional partners those have the significant role for the bacterial survival. At last, the current study depicts that the annotated hypothetical protein is linked with hydrolase activity which might be of great interest to the further research in bacterial genetics.
abstract_unstemmed	Streptomyces coelicolor is a gram-positive soil bacterium which is well known for the production of several antibiotics used in various biotechnological applications. But numerous proteins from its genome are considered hypothetical proteins. Therefore, the present study aimed to reveal the functions of a hypothetical protein from the genome of S. coelicolor. Several bioinformatics tools were employed to predict the structure and function of this protein. Sequence similarity was searched through the available bioinformatics databases to find out the homologous protein. The secondary and tertiary structure were predicted and further validated with quality assessment tools. Furthermore, the active site and the interacting proteins were also explored with the utilization of CASTp and STRING server. The hypothetical protein showed the important biological activity having with two functional domain including POD-like_MBL-fold and rhodanese homology domain. The functional annotation exposed that the selected hypothetical protein could show the hydrolase activity. Furthermore, protein-protein interactions of selected hypothetical protein revealed several functional partners those have the significant role for the bacterial survival. At last, the current study depicts that the annotated hypothetical protein is linked with hydrolase activity which might be of great interest to the further research in bacterial genetics.
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title_short	Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2)
url	https://doi.org/10.5808/GI.2020.18.3.e28 https://doaj.org/article/d2784abd36f1489e9054e0781a84a5bb http://genominfo.org/upload/pdf/gi-2020-18-3-e28.pdf https://doaj.org/toc/2234-0742
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up_date	2024-07-03T13:56:44.165Z
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Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of A3(2)

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