Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors

SUV (the Suppressor of variegation [Su(var)] homologs and related) gene family is a subgroup of the SET gene family. According to the SRA domain and WIYLD domain distributions, it can be divided into two categories, namely SUVH (the Suppressor of variegation [Su(var)] homologs) and SUVR (the Suppres...
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Autor*in:	Meimei Hu [verfasserIn] Mengdi Li [verfasserIn] Jianbo Wang [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2021

Schlagwörter:	SUV gene family evolutionary relationship gene expansion gene loss gene expression

Übergeordnetes Werk:	In: Genes - MDPI AG, 2010, 12(2021), 12, p 1848
Übergeordnetes Werk:	volume:12 ; year:2021 ; number:12, p 1848

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/genes12121848

Katalog-ID:	DOAJ045296111

Internformat


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520			\|a SUV (the Suppressor of variegation [Su(var)] homologs and related) gene family is a subgroup of the SET gene family. According to the SRA domain and WIYLD domain distributions, it can be divided into two categories, namely SUVH (the Suppressor of variegation [Su(var)] homologs) and SUVR (the Suppressor of variegation [Su(var)] related). In this study, 139 SUV genes were identified in allopolyploid <i<B</i<<i<rassica napus</i< and its diploid ancestors, and their evolutionary relationships, protein properties, gene structures, motif distributions, transposable elements, <i<cis</i<-acting elements and gene expression patterns were analyzed. Our results showed that the SUV gene family of <i<B. napus</i< was amplified during allopolyploidization, in which the segmental duplication and TRD played critical roles. After the separation of <i<Brassica</i< and Arabidopsis lineages, orthologous gene analysis showed that many SUV genes were lost during the evolutionary process in <i<B. rapa</i<, <i<B. oleracea</i< and <i<B. napus</i<. The analysis of the gene and protein structures and expression patterns of 30 orthologous gene pairs which may have evolutionary relationships showed that most of them were conserved in gene structures and protein motifs, but only four gene pairs had the same expression patterns.
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spelling	10.3390/genes12121848 doi (DE-627)DOAJ045296111 (DE-599)DOAJbbaf62f0f065493cb7975c63532b6d8e DE-627 ger DE-627 rakwb eng QH426-470 Meimei Hu verfasserin aut Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier SUV (the Suppressor of variegation [Su(var)] homologs and related) gene family is a subgroup of the SET gene family. According to the SRA domain and WIYLD domain distributions, it can be divided into two categories, namely SUVH (the Suppressor of variegation [Su(var)] homologs) and SUVR (the Suppressor of variegation [Su(var)] related). In this study, 139 SUV genes were identified in allopolyploid <i<B</i<<i<rassica napus</i< and its diploid ancestors, and their evolutionary relationships, protein properties, gene structures, motif distributions, transposable elements, <i<cis</i<-acting elements and gene expression patterns were analyzed. Our results showed that the SUV gene family of <i<B. napus</i< was amplified during allopolyploidization, in which the segmental duplication and TRD played critical roles. After the separation of <i<Brassica</i< and Arabidopsis lineages, orthologous gene analysis showed that many SUV genes were lost during the evolutionary process in <i<B. rapa</i<, <i<B. oleracea</i< and <i<B. napus</i<. The analysis of the gene and protein structures and expression patterns of 30 orthologous gene pairs which may have evolutionary relationships showed that most of them were conserved in gene structures and protein motifs, but only four gene pairs had the same expression patterns. <i<Brassica</i< SUV gene family evolutionary relationship gene expansion gene loss gene expression Genetics Mengdi Li verfasserin aut Jianbo Wang verfasserin aut In Genes MDPI AG, 2010 12(2021), 12, p 1848 (DE-627)614096537 (DE-600)2527218-4 20734425 nnns volume:12 year:2021 number:12, p 1848 https://doi.org/10.3390/genes12121848 kostenfrei https://doaj.org/article/bbaf62f0f065493cb7975c63532b6d8e kostenfrei https://www.mdpi.com/2073-4425/12/12/1848 kostenfrei https://doaj.org/toc/2073-4425 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2021 12, p 1848
allfields_unstemmed	10.3390/genes12121848 doi (DE-627)DOAJ045296111 (DE-599)DOAJbbaf62f0f065493cb7975c63532b6d8e DE-627 ger DE-627 rakwb eng QH426-470 Meimei Hu verfasserin aut Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier SUV (the Suppressor of variegation [Su(var)] homologs and related) gene family is a subgroup of the SET gene family. According to the SRA domain and WIYLD domain distributions, it can be divided into two categories, namely SUVH (the Suppressor of variegation [Su(var)] homologs) and SUVR (the Suppressor of variegation [Su(var)] related). In this study, 139 SUV genes were identified in allopolyploid <i<B</i<<i<rassica napus</i< and its diploid ancestors, and their evolutionary relationships, protein properties, gene structures, motif distributions, transposable elements, <i<cis</i<-acting elements and gene expression patterns were analyzed. Our results showed that the SUV gene family of <i<B. napus</i< was amplified during allopolyploidization, in which the segmental duplication and TRD played critical roles. After the separation of <i<Brassica</i< and Arabidopsis lineages, orthologous gene analysis showed that many SUV genes were lost during the evolutionary process in <i<B. rapa</i<, <i<B. oleracea</i< and <i<B. napus</i<. The analysis of the gene and protein structures and expression patterns of 30 orthologous gene pairs which may have evolutionary relationships showed that most of them were conserved in gene structures and protein motifs, but only four gene pairs had the same expression patterns. <i<Brassica</i< SUV gene family evolutionary relationship gene expansion gene loss gene expression Genetics Mengdi Li verfasserin aut Jianbo Wang verfasserin aut In Genes MDPI AG, 2010 12(2021), 12, p 1848 (DE-627)614096537 (DE-600)2527218-4 20734425 nnns volume:12 year:2021 number:12, p 1848 https://doi.org/10.3390/genes12121848 kostenfrei https://doaj.org/article/bbaf62f0f065493cb7975c63532b6d8e kostenfrei https://www.mdpi.com/2073-4425/12/12/1848 kostenfrei https://doaj.org/toc/2073-4425 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2021 12, p 1848
allfieldsGer	10.3390/genes12121848 doi (DE-627)DOAJ045296111 (DE-599)DOAJbbaf62f0f065493cb7975c63532b6d8e DE-627 ger DE-627 rakwb eng QH426-470 Meimei Hu verfasserin aut Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier SUV (the Suppressor of variegation [Su(var)] homologs and related) gene family is a subgroup of the SET gene family. According to the SRA domain and WIYLD domain distributions, it can be divided into two categories, namely SUVH (the Suppressor of variegation [Su(var)] homologs) and SUVR (the Suppressor of variegation [Su(var)] related). In this study, 139 SUV genes were identified in allopolyploid <i<B</i<<i<rassica napus</i< and its diploid ancestors, and their evolutionary relationships, protein properties, gene structures, motif distributions, transposable elements, <i<cis</i<-acting elements and gene expression patterns were analyzed. Our results showed that the SUV gene family of <i<B. napus</i< was amplified during allopolyploidization, in which the segmental duplication and TRD played critical roles. After the separation of <i<Brassica</i< and Arabidopsis lineages, orthologous gene analysis showed that many SUV genes were lost during the evolutionary process in <i<B. rapa</i<, <i<B. oleracea</i< and <i<B. napus</i<. The analysis of the gene and protein structures and expression patterns of 30 orthologous gene pairs which may have evolutionary relationships showed that most of them were conserved in gene structures and protein motifs, but only four gene pairs had the same expression patterns. <i<Brassica</i< SUV gene family evolutionary relationship gene expansion gene loss gene expression Genetics Mengdi Li verfasserin aut Jianbo Wang verfasserin aut In Genes MDPI AG, 2010 12(2021), 12, p 1848 (DE-627)614096537 (DE-600)2527218-4 20734425 nnns volume:12 year:2021 number:12, p 1848 https://doi.org/10.3390/genes12121848 kostenfrei https://doaj.org/article/bbaf62f0f065493cb7975c63532b6d8e kostenfrei https://www.mdpi.com/2073-4425/12/12/1848 kostenfrei https://doaj.org/toc/2073-4425 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2021 12, p 1848
allfieldsSound	10.3390/genes12121848 doi (DE-627)DOAJ045296111 (DE-599)DOAJbbaf62f0f065493cb7975c63532b6d8e DE-627 ger DE-627 rakwb eng QH426-470 Meimei Hu verfasserin aut Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier SUV (the Suppressor of variegation [Su(var)] homologs and related) gene family is a subgroup of the SET gene family. According to the SRA domain and WIYLD domain distributions, it can be divided into two categories, namely SUVH (the Suppressor of variegation [Su(var)] homologs) and SUVR (the Suppressor of variegation [Su(var)] related). In this study, 139 SUV genes were identified in allopolyploid <i<B</i<<i<rassica napus</i< and its diploid ancestors, and their evolutionary relationships, protein properties, gene structures, motif distributions, transposable elements, <i<cis</i<-acting elements and gene expression patterns were analyzed. Our results showed that the SUV gene family of <i<B. napus</i< was amplified during allopolyploidization, in which the segmental duplication and TRD played critical roles. After the separation of <i<Brassica</i< and Arabidopsis lineages, orthologous gene analysis showed that many SUV genes were lost during the evolutionary process in <i<B. rapa</i<, <i<B. oleracea</i< and <i<B. napus</i<. The analysis of the gene and protein structures and expression patterns of 30 orthologous gene pairs which may have evolutionary relationships showed that most of them were conserved in gene structures and protein motifs, but only four gene pairs had the same expression patterns. <i<Brassica</i< SUV gene family evolutionary relationship gene expansion gene loss gene expression Genetics Mengdi Li verfasserin aut Jianbo Wang verfasserin aut In Genes MDPI AG, 2010 12(2021), 12, p 1848 (DE-627)614096537 (DE-600)2527218-4 20734425 nnns volume:12 year:2021 number:12, p 1848 https://doi.org/10.3390/genes12121848 kostenfrei https://doaj.org/article/bbaf62f0f065493cb7975c63532b6d8e kostenfrei https://www.mdpi.com/2073-4425/12/12/1848 kostenfrei https://doaj.org/toc/2073-4425 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2021 12, p 1848
language	English
source	In Genes 12(2021), 12, p 1848 volume:12 year:2021 number:12, p 1848
sourceStr	In Genes 12(2021), 12, p 1848 volume:12 year:2021 number:12, p 1848
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	<i<Brassica</i< SUV gene family evolutionary relationship gene expansion gene loss gene expression Genetics
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container_title	Genes
authorswithroles_txt_mv	Meimei Hu @@aut@@ Mengdi Li @@aut@@ Jianbo Wang @@aut@@
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callnumber-first	Q - Science
author	Meimei Hu
spellingShingle	Meimei Hu misc QH426-470 misc <i<Brassica</i< misc SUV gene family misc evolutionary relationship misc gene expansion misc gene loss misc gene expression misc Genetics Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors
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topic_title	QH426-470 Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors <i<Brassica</i< SUV gene family evolutionary relationship gene expansion gene loss gene expression
topic	misc QH426-470 misc <i<Brassica</i< misc SUV gene family misc evolutionary relationship misc gene expansion misc gene loss misc gene expression misc Genetics
topic_unstemmed	misc QH426-470 misc <i<Brassica</i< misc SUV gene family misc evolutionary relationship misc gene expansion misc gene loss misc gene expression misc Genetics
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title	Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors
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title_full	Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors
author_sort	Meimei Hu
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title_sort	comprehensive analysis of the suv gene family in allopolyploid <i<brassica napus</i< and its diploid ancestors
callnumber	QH426-470
title_auth	Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors
abstract	SUV (the Suppressor of variegation [Su(var)] homologs and related) gene family is a subgroup of the SET gene family. According to the SRA domain and WIYLD domain distributions, it can be divided into two categories, namely SUVH (the Suppressor of variegation [Su(var)] homologs) and SUVR (the Suppressor of variegation [Su(var)] related). In this study, 139 SUV genes were identified in allopolyploid <i<B</i<<i<rassica napus</i< and its diploid ancestors, and their evolutionary relationships, protein properties, gene structures, motif distributions, transposable elements, <i<cis</i<-acting elements and gene expression patterns were analyzed. Our results showed that the SUV gene family of <i<B. napus</i< was amplified during allopolyploidization, in which the segmental duplication and TRD played critical roles. After the separation of <i<Brassica</i< and Arabidopsis lineages, orthologous gene analysis showed that many SUV genes were lost during the evolutionary process in <i<B. rapa</i<, <i<B. oleracea</i< and <i<B. napus</i<. The analysis of the gene and protein structures and expression patterns of 30 orthologous gene pairs which may have evolutionary relationships showed that most of them were conserved in gene structures and protein motifs, but only four gene pairs had the same expression patterns.
abstractGer	SUV (the Suppressor of variegation [Su(var)] homologs and related) gene family is a subgroup of the SET gene family. According to the SRA domain and WIYLD domain distributions, it can be divided into two categories, namely SUVH (the Suppressor of variegation [Su(var)] homologs) and SUVR (the Suppressor of variegation [Su(var)] related). In this study, 139 SUV genes were identified in allopolyploid <i<B</i<<i<rassica napus</i< and its diploid ancestors, and their evolutionary relationships, protein properties, gene structures, motif distributions, transposable elements, <i<cis</i<-acting elements and gene expression patterns were analyzed. Our results showed that the SUV gene family of <i<B. napus</i< was amplified during allopolyploidization, in which the segmental duplication and TRD played critical roles. After the separation of <i<Brassica</i< and Arabidopsis lineages, orthologous gene analysis showed that many SUV genes were lost during the evolutionary process in <i<B. rapa</i<, <i<B. oleracea</i< and <i<B. napus</i<. The analysis of the gene and protein structures and expression patterns of 30 orthologous gene pairs which may have evolutionary relationships showed that most of them were conserved in gene structures and protein motifs, but only four gene pairs had the same expression patterns.
abstract_unstemmed	SUV (the Suppressor of variegation [Su(var)] homologs and related) gene family is a subgroup of the SET gene family. According to the SRA domain and WIYLD domain distributions, it can be divided into two categories, namely SUVH (the Suppressor of variegation [Su(var)] homologs) and SUVR (the Suppressor of variegation [Su(var)] related). In this study, 139 SUV genes were identified in allopolyploid <i<B</i<<i<rassica napus</i< and its diploid ancestors, and their evolutionary relationships, protein properties, gene structures, motif distributions, transposable elements, <i<cis</i<-acting elements and gene expression patterns were analyzed. Our results showed that the SUV gene family of <i<B. napus</i< was amplified during allopolyploidization, in which the segmental duplication and TRD played critical roles. After the separation of <i<Brassica</i< and Arabidopsis lineages, orthologous gene analysis showed that many SUV genes were lost during the evolutionary process in <i<B. rapa</i<, <i<B. oleracea</i< and <i<B. napus</i<. The analysis of the gene and protein structures and expression patterns of 30 orthologous gene pairs which may have evolutionary relationships showed that most of them were conserved in gene structures and protein motifs, but only four gene pairs had the same expression patterns.
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container_issue	12, p 1848
title_short	Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors
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Comprehensive Analysis of the SUV Gene Family in Allopolyploid <i<Brassica napus</i< and Its Diploid Ancestors

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