Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis

The family of Ustilaginaceae belongs to the order of Basidiomycetes. Despite their plant pathogenicity causing, e.g., corn smut disease, they are also known as natural producers of value-added chemicals such as extracellular glycolipids, organic acids, and polyols. Here, we present 17 high-quality d...
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Autor*in:	Lena Ullmann [verfasserIn] Daniel Wibberg [verfasserIn] Tobias Busche [verfasserIn] Christian Rückert [verfasserIn] Andreas Müsgens [verfasserIn] Jörn Kalinowski [verfasserIn] Lars M. Blank [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2022

Schlagwörter:	AAI ANI POCP Oxford nanopore phylogenomics Ustilaginaceae

Übergeordnetes Werk:	In: Journal of Fungi - MDPI AG, 2015, 8(2022), 3, p 269
Übergeordnetes Werk:	volume:8 ; year:2022 ; number:3, p 269

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/jof8030269

Katalog-ID:	DOAJ047687347

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spelling	10.3390/jof8030269 doi (DE-627)DOAJ047687347 (DE-599)DOAJ79e943cb946d42b0b0c9c85a68bab902 DE-627 ger DE-627 rakwb eng QH301-705.5 Lena Ullmann verfasserin aut Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The family of Ustilaginaceae belongs to the order of Basidiomycetes. Despite their plant pathogenicity causing, e.g., corn smut disease, they are also known as natural producers of value-added chemicals such as extracellular glycolipids, organic acids, and polyols. Here, we present 17 high-quality draft genome sequences (N50 < 1 Mb) combining third-generation nanopore and second-generation Illumina sequencing. The data were analyzed with taxonomical genome-based bioinformatics methods such as Percentage of Conserved Proteins (POCP), Average Nucleotide Identity (ANI), and Average Amino Acid Identity (AAI) analyses indicating that a reclassification of the Ustilaginaceae family might be required. Further, conserved core genes were determined to calculate a phylogenomic core genome tree of the Ustilaginaceae that also supported the results of the other phylogenomic analysis. In addition, to genomic comparisons, secondary metabolite clusters (e.g., itaconic acid, mannosylerythritol lipids, and ustilagic acid) of biotechnological interest were analyzed, whereas the sheer number of clusters did not differ much between species. AAI ANI POCP Oxford nanopore phylogenomics Ustilaginaceae Biology (General) Daniel Wibberg verfasserin aut Tobias Busche verfasserin aut Christian Rückert verfasserin aut Andreas Müsgens verfasserin aut Jörn Kalinowski verfasserin aut Lars M. Blank verfasserin aut In Journal of Fungi MDPI AG, 2015 8(2022), 3, p 269 (DE-627)796588538 (DE-600)2784229-0 2309608X nnns volume:8 year:2022 number:3, p 269 https://doi.org/10.3390/jof8030269 kostenfrei https://doaj.org/article/79e943cb946d42b0b0c9c85a68bab902 kostenfrei https://www.mdpi.com/2309-608X/8/3/269 kostenfrei https://doaj.org/toc/2309-608X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2022 3, p 269
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allfieldsSound	10.3390/jof8030269 doi (DE-627)DOAJ047687347 (DE-599)DOAJ79e943cb946d42b0b0c9c85a68bab902 DE-627 ger DE-627 rakwb eng QH301-705.5 Lena Ullmann verfasserin aut Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The family of Ustilaginaceae belongs to the order of Basidiomycetes. Despite their plant pathogenicity causing, e.g., corn smut disease, they are also known as natural producers of value-added chemicals such as extracellular glycolipids, organic acids, and polyols. Here, we present 17 high-quality draft genome sequences (N50 < 1 Mb) combining third-generation nanopore and second-generation Illumina sequencing. The data were analyzed with taxonomical genome-based bioinformatics methods such as Percentage of Conserved Proteins (POCP), Average Nucleotide Identity (ANI), and Average Amino Acid Identity (AAI) analyses indicating that a reclassification of the Ustilaginaceae family might be required. Further, conserved core genes were determined to calculate a phylogenomic core genome tree of the Ustilaginaceae that also supported the results of the other phylogenomic analysis. In addition, to genomic comparisons, secondary metabolite clusters (e.g., itaconic acid, mannosylerythritol lipids, and ustilagic acid) of biotechnological interest were analyzed, whereas the sheer number of clusters did not differ much between species. AAI ANI POCP Oxford nanopore phylogenomics Ustilaginaceae Biology (General) Daniel Wibberg verfasserin aut Tobias Busche verfasserin aut Christian Rückert verfasserin aut Andreas Müsgens verfasserin aut Jörn Kalinowski verfasserin aut Lars M. Blank verfasserin aut In Journal of Fungi MDPI AG, 2015 8(2022), 3, p 269 (DE-627)796588538 (DE-600)2784229-0 2309608X nnns volume:8 year:2022 number:3, p 269 https://doi.org/10.3390/jof8030269 kostenfrei https://doaj.org/article/79e943cb946d42b0b0c9c85a68bab902 kostenfrei https://www.mdpi.com/2309-608X/8/3/269 kostenfrei https://doaj.org/toc/2309-608X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2022 3, p 269
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authorswithroles_txt_mv	Lena Ullmann @@aut@@ Daniel Wibberg @@aut@@ Tobias Busche @@aut@@ Christian Rückert @@aut@@ Andreas Müsgens @@aut@@ Jörn Kalinowski @@aut@@ Lars M. Blank @@aut@@
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callnumber-first	Q - Science
author	Lena Ullmann
spellingShingle	Lena Ullmann misc QH301-705.5 misc AAI misc ANI misc POCP misc Oxford nanopore misc phylogenomics misc Ustilaginaceae misc Biology (General) Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis
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topic_title	QH301-705.5 Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis AAI ANI POCP Oxford nanopore phylogenomics Ustilaginaceae
topic	misc QH301-705.5 misc AAI misc ANI misc POCP misc Oxford nanopore misc phylogenomics misc Ustilaginaceae misc Biology (General)
topic_unstemmed	misc QH301-705.5 misc AAI misc ANI misc POCP misc Oxford nanopore misc phylogenomics misc Ustilaginaceae misc Biology (General)
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title	Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis
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title_full	Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis
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title_sort	seventeen ustilaginaceae high-quality genome sequences allow phylogenomic analysis and provide insights into secondary metabolite synthesis
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title_auth	Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis
abstract	The family of Ustilaginaceae belongs to the order of Basidiomycetes. Despite their plant pathogenicity causing, e.g., corn smut disease, they are also known as natural producers of value-added chemicals such as extracellular glycolipids, organic acids, and polyols. Here, we present 17 high-quality draft genome sequences (N50 < 1 Mb) combining third-generation nanopore and second-generation Illumina sequencing. The data were analyzed with taxonomical genome-based bioinformatics methods such as Percentage of Conserved Proteins (POCP), Average Nucleotide Identity (ANI), and Average Amino Acid Identity (AAI) analyses indicating that a reclassification of the Ustilaginaceae family might be required. Further, conserved core genes were determined to calculate a phylogenomic core genome tree of the Ustilaginaceae that also supported the results of the other phylogenomic analysis. In addition, to genomic comparisons, secondary metabolite clusters (e.g., itaconic acid, mannosylerythritol lipids, and ustilagic acid) of biotechnological interest were analyzed, whereas the sheer number of clusters did not differ much between species.
abstractGer	The family of Ustilaginaceae belongs to the order of Basidiomycetes. Despite their plant pathogenicity causing, e.g., corn smut disease, they are also known as natural producers of value-added chemicals such as extracellular glycolipids, organic acids, and polyols. Here, we present 17 high-quality draft genome sequences (N50 < 1 Mb) combining third-generation nanopore and second-generation Illumina sequencing. The data were analyzed with taxonomical genome-based bioinformatics methods such as Percentage of Conserved Proteins (POCP), Average Nucleotide Identity (ANI), and Average Amino Acid Identity (AAI) analyses indicating that a reclassification of the Ustilaginaceae family might be required. Further, conserved core genes were determined to calculate a phylogenomic core genome tree of the Ustilaginaceae that also supported the results of the other phylogenomic analysis. In addition, to genomic comparisons, secondary metabolite clusters (e.g., itaconic acid, mannosylerythritol lipids, and ustilagic acid) of biotechnological interest were analyzed, whereas the sheer number of clusters did not differ much between species.
abstract_unstemmed	The family of Ustilaginaceae belongs to the order of Basidiomycetes. Despite their plant pathogenicity causing, e.g., corn smut disease, they are also known as natural producers of value-added chemicals such as extracellular glycolipids, organic acids, and polyols. Here, we present 17 high-quality draft genome sequences (N50 < 1 Mb) combining third-generation nanopore and second-generation Illumina sequencing. The data were analyzed with taxonomical genome-based bioinformatics methods such as Percentage of Conserved Proteins (POCP), Average Nucleotide Identity (ANI), and Average Amino Acid Identity (AAI) analyses indicating that a reclassification of the Ustilaginaceae family might be required. Further, conserved core genes were determined to calculate a phylogenomic core genome tree of the Ustilaginaceae that also supported the results of the other phylogenomic analysis. In addition, to genomic comparisons, secondary metabolite clusters (e.g., itaconic acid, mannosylerythritol lipids, and ustilagic acid) of biotechnological interest were analyzed, whereas the sheer number of clusters did not differ much between species.
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title_short	Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis
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Seventeen Ustilaginaceae High-Quality Genome Sequences Allow Phylogenomic Analysis and Provide Insights into Secondary Metabolite Synthesis

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