Transcriptomic Analysis of High Fat Diet Fed Mouse Brain Cortex

High fat diet can lead to metabolic diseases such as obesity and diabetes known to be chronic inflammatory diseases with high prevalence worldwide. Recent studies have reported cognitive dysfunction in obese patients is caused by a high fat diet. Accordingly, such dysfunction is called “type 3 diabe...
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Autor*in:	Gwangho Yoon [verfasserIn] Kyung A Cho [verfasserIn] Juhyun Song [verfasserIn] Young-Kook Kim [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2019

Schlagwörter:	non-coding RNAs long non-coding RNAs circular RNAs high fat diet brain cortex

Übergeordnetes Werk:	In: Frontiers in Genetics - Frontiers Media S.A., 2011, 10(2019)
Übergeordnetes Werk:	volume:10 ; year:2019

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3389/fgene.2019.00083

Katalog-ID:	DOAJ056304935

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spelling	10.3389/fgene.2019.00083 doi (DE-627)DOAJ056304935 (DE-599)DOAJcf7e80a7bbdd47c6b977d37badaf84f2 DE-627 ger DE-627 rakwb eng QH426-470 Gwangho Yoon verfasserin aut Transcriptomic Analysis of High Fat Diet Fed Mouse Brain Cortex 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier High fat diet can lead to metabolic diseases such as obesity and diabetes known to be chronic inflammatory diseases with high prevalence worldwide. Recent studies have reported cognitive dysfunction in obese patients is caused by a high fat diet. Accordingly, such dysfunction is called “type 3 diabetes” or “diabetic dementia.” Although dysregulation of protein-coding genes has been extensively studied, profiling of non-coding RNAs including long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) has not been reported yet. Therefore, the objective of this study was to obtain profiles of diverse RNAs and determine their patterns of alteration in high fat fed brain cortex compared to normal brain cortex. To investigate regulatory roles of both coding and non-coding RNAs in high fat diet brain, we performed RNA sequencing of ribosomal RNA-depleted RNAs and identified genome-wide lncRNAs and circRNAs expression and co-expression patterns of mRNAs in high fat diet mouse brain cortex. Our results showed expression levels of mRNAs related to neurogenesis, synapse, and calcium signaling were highly changed in high fat diet fed cortex. In addition, numerous differentially expressed lncRNAs and circRNAs were identified. Our study provides valuable expression profiles and potential function of both coding and non-coding RNAs in high fat diet fed brain cortex. non-coding RNAs long non-coding RNAs circular RNAs high fat diet brain cortex Genetics Gwangho Yoon verfasserin aut Kyung A Cho verfasserin aut Kyung A Cho verfasserin aut Juhyun Song verfasserin aut Juhyun Song verfasserin aut Young-Kook Kim verfasserin aut Young-Kook Kim verfasserin aut In Frontiers in Genetics Frontiers Media S.A., 2011 10(2019) (DE-627)65799829X (DE-600)2606823-0 16648021 nnns volume:10 year:2019 https://doi.org/10.3389/fgene.2019.00083 kostenfrei https://doaj.org/article/cf7e80a7bbdd47c6b977d37badaf84f2 kostenfrei https://www.frontiersin.org/article/10.3389/fgene.2019.00083/full kostenfrei https://doaj.org/toc/1664-8021 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2019
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allfieldsGer	10.3389/fgene.2019.00083 doi (DE-627)DOAJ056304935 (DE-599)DOAJcf7e80a7bbdd47c6b977d37badaf84f2 DE-627 ger DE-627 rakwb eng QH426-470 Gwangho Yoon verfasserin aut Transcriptomic Analysis of High Fat Diet Fed Mouse Brain Cortex 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier High fat diet can lead to metabolic diseases such as obesity and diabetes known to be chronic inflammatory diseases with high prevalence worldwide. Recent studies have reported cognitive dysfunction in obese patients is caused by a high fat diet. Accordingly, such dysfunction is called “type 3 diabetes” or “diabetic dementia.” Although dysregulation of protein-coding genes has been extensively studied, profiling of non-coding RNAs including long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) has not been reported yet. Therefore, the objective of this study was to obtain profiles of diverse RNAs and determine their patterns of alteration in high fat fed brain cortex compared to normal brain cortex. To investigate regulatory roles of both coding and non-coding RNAs in high fat diet brain, we performed RNA sequencing of ribosomal RNA-depleted RNAs and identified genome-wide lncRNAs and circRNAs expression and co-expression patterns of mRNAs in high fat diet mouse brain cortex. Our results showed expression levels of mRNAs related to neurogenesis, synapse, and calcium signaling were highly changed in high fat diet fed cortex. In addition, numerous differentially expressed lncRNAs and circRNAs were identified. Our study provides valuable expression profiles and potential function of both coding and non-coding RNAs in high fat diet fed brain cortex. non-coding RNAs long non-coding RNAs circular RNAs high fat diet brain cortex Genetics Gwangho Yoon verfasserin aut Kyung A Cho verfasserin aut Kyung A Cho verfasserin aut Juhyun Song verfasserin aut Juhyun Song verfasserin aut Young-Kook Kim verfasserin aut Young-Kook Kim verfasserin aut In Frontiers in Genetics Frontiers Media S.A., 2011 10(2019) (DE-627)65799829X (DE-600)2606823-0 16648021 nnns volume:10 year:2019 https://doi.org/10.3389/fgene.2019.00083 kostenfrei https://doaj.org/article/cf7e80a7bbdd47c6b977d37badaf84f2 kostenfrei https://www.frontiersin.org/article/10.3389/fgene.2019.00083/full kostenfrei https://doaj.org/toc/1664-8021 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2019
allfieldsSound	10.3389/fgene.2019.00083 doi (DE-627)DOAJ056304935 (DE-599)DOAJcf7e80a7bbdd47c6b977d37badaf84f2 DE-627 ger DE-627 rakwb eng QH426-470 Gwangho Yoon verfasserin aut Transcriptomic Analysis of High Fat Diet Fed Mouse Brain Cortex 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier High fat diet can lead to metabolic diseases such as obesity and diabetes known to be chronic inflammatory diseases with high prevalence worldwide. Recent studies have reported cognitive dysfunction in obese patients is caused by a high fat diet. Accordingly, such dysfunction is called “type 3 diabetes” or “diabetic dementia.” Although dysregulation of protein-coding genes has been extensively studied, profiling of non-coding RNAs including long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) has not been reported yet. Therefore, the objective of this study was to obtain profiles of diverse RNAs and determine their patterns of alteration in high fat fed brain cortex compared to normal brain cortex. To investigate regulatory roles of both coding and non-coding RNAs in high fat diet brain, we performed RNA sequencing of ribosomal RNA-depleted RNAs and identified genome-wide lncRNAs and circRNAs expression and co-expression patterns of mRNAs in high fat diet mouse brain cortex. Our results showed expression levels of mRNAs related to neurogenesis, synapse, and calcium signaling were highly changed in high fat diet fed cortex. In addition, numerous differentially expressed lncRNAs and circRNAs were identified. Our study provides valuable expression profiles and potential function of both coding and non-coding RNAs in high fat diet fed brain cortex. non-coding RNAs long non-coding RNAs circular RNAs high fat diet brain cortex Genetics Gwangho Yoon verfasserin aut Kyung A Cho verfasserin aut Kyung A Cho verfasserin aut Juhyun Song verfasserin aut Juhyun Song verfasserin aut Young-Kook Kim verfasserin aut Young-Kook Kim verfasserin aut In Frontiers in Genetics Frontiers Media S.A., 2011 10(2019) (DE-627)65799829X (DE-600)2606823-0 16648021 nnns volume:10 year:2019 https://doi.org/10.3389/fgene.2019.00083 kostenfrei https://doaj.org/article/cf7e80a7bbdd47c6b977d37badaf84f2 kostenfrei https://www.frontiersin.org/article/10.3389/fgene.2019.00083/full kostenfrei https://doaj.org/toc/1664-8021 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2019
language	English
source	In Frontiers in Genetics 10(2019) volume:10 year:2019
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container_title	Frontiers in Genetics
authorswithroles_txt_mv	Gwangho Yoon @@aut@@ Kyung A Cho @@aut@@ Juhyun Song @@aut@@ Young-Kook Kim @@aut@@
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author	Gwangho Yoon
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topic_title	QH426-470 Transcriptomic Analysis of High Fat Diet Fed Mouse Brain Cortex non-coding RNAs long non-coding RNAs circular RNAs high fat diet brain cortex
topic	misc QH426-470 misc non-coding RNAs misc long non-coding RNAs misc circular RNAs misc high fat diet misc brain cortex misc Genetics
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title	Transcriptomic Analysis of High Fat Diet Fed Mouse Brain Cortex
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title_full	Transcriptomic Analysis of High Fat Diet Fed Mouse Brain Cortex
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title_sort	transcriptomic analysis of high fat diet fed mouse brain cortex
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title_auth	Transcriptomic Analysis of High Fat Diet Fed Mouse Brain Cortex
abstract	High fat diet can lead to metabolic diseases such as obesity and diabetes known to be chronic inflammatory diseases with high prevalence worldwide. Recent studies have reported cognitive dysfunction in obese patients is caused by a high fat diet. Accordingly, such dysfunction is called “type 3 diabetes” or “diabetic dementia.” Although dysregulation of protein-coding genes has been extensively studied, profiling of non-coding RNAs including long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) has not been reported yet. Therefore, the objective of this study was to obtain profiles of diverse RNAs and determine their patterns of alteration in high fat fed brain cortex compared to normal brain cortex. To investigate regulatory roles of both coding and non-coding RNAs in high fat diet brain, we performed RNA sequencing of ribosomal RNA-depleted RNAs and identified genome-wide lncRNAs and circRNAs expression and co-expression patterns of mRNAs in high fat diet mouse brain cortex. Our results showed expression levels of mRNAs related to neurogenesis, synapse, and calcium signaling were highly changed in high fat diet fed cortex. In addition, numerous differentially expressed lncRNAs and circRNAs were identified. Our study provides valuable expression profiles and potential function of both coding and non-coding RNAs in high fat diet fed brain cortex.
abstractGer	High fat diet can lead to metabolic diseases such as obesity and diabetes known to be chronic inflammatory diseases with high prevalence worldwide. Recent studies have reported cognitive dysfunction in obese patients is caused by a high fat diet. Accordingly, such dysfunction is called “type 3 diabetes” or “diabetic dementia.” Although dysregulation of protein-coding genes has been extensively studied, profiling of non-coding RNAs including long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) has not been reported yet. Therefore, the objective of this study was to obtain profiles of diverse RNAs and determine their patterns of alteration in high fat fed brain cortex compared to normal brain cortex. To investigate regulatory roles of both coding and non-coding RNAs in high fat diet brain, we performed RNA sequencing of ribosomal RNA-depleted RNAs and identified genome-wide lncRNAs and circRNAs expression and co-expression patterns of mRNAs in high fat diet mouse brain cortex. Our results showed expression levels of mRNAs related to neurogenesis, synapse, and calcium signaling were highly changed in high fat diet fed cortex. In addition, numerous differentially expressed lncRNAs and circRNAs were identified. Our study provides valuable expression profiles and potential function of both coding and non-coding RNAs in high fat diet fed brain cortex.
abstract_unstemmed	High fat diet can lead to metabolic diseases such as obesity and diabetes known to be chronic inflammatory diseases with high prevalence worldwide. Recent studies have reported cognitive dysfunction in obese patients is caused by a high fat diet. Accordingly, such dysfunction is called “type 3 diabetes” or “diabetic dementia.” Although dysregulation of protein-coding genes has been extensively studied, profiling of non-coding RNAs including long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) has not been reported yet. Therefore, the objective of this study was to obtain profiles of diverse RNAs and determine their patterns of alteration in high fat fed brain cortex compared to normal brain cortex. To investigate regulatory roles of both coding and non-coding RNAs in high fat diet brain, we performed RNA sequencing of ribosomal RNA-depleted RNAs and identified genome-wide lncRNAs and circRNAs expression and co-expression patterns of mRNAs in high fat diet mouse brain cortex. Our results showed expression levels of mRNAs related to neurogenesis, synapse, and calcium signaling were highly changed in high fat diet fed cortex. In addition, numerous differentially expressed lncRNAs and circRNAs were identified. Our study provides valuable expression profiles and potential function of both coding and non-coding RNAs in high fat diet fed brain cortex.
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title_short	Transcriptomic Analysis of High Fat Diet Fed Mouse Brain Cortex
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