The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

Computational models can help researchers to interpret data, understand biological function, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form that can be exchanged between different software sys...
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Autor*in:	Hucka Michael [verfasserIn] Bergmann Frank T. [verfasserIn] Hoops Stefan [verfasserIn] Keating Sarah M. [verfasserIn] Sahle Sven [verfasserIn] Schaff James C. [verfasserIn] Smith Lucian P. [verfasserIn] Wilkinson Darren J. [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2015

Übergeordnetes Werk:	In: Journal of Integrative Bioinformatics - De Gruyter, 2018, 12(2015), 2, Seite 382-549
Übergeordnetes Werk:	volume:12 ; year:2015 ; number:2 ; pages:382-549

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.1515/jib-2015-266

Katalog-ID:	DOAJ058890505

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spelling	10.1515/jib-2015-266 doi (DE-627)DOAJ058890505 (DE-599)DOAJbcfe81006a55446586285ffd226ffded DE-627 ger DE-627 rakwb eng TP248.13-248.65 Hucka Michael verfasserin aut The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core 2015 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Computational models can help researchers to interpret data, understand biological function, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form that can be exchanged between different software systems. SBML is oriented towards describing biological processes of the sort common in research on a number of topics, including metabolic pathways, cell signaling pathways, and many others. By supporting SBML as an input/output format, different tools can all operate on an identical representation of a model, removing opportunities for translation errors and assuring a common starting point for analyses and simulations. This document provides the specification for Version 1 of SBML Level 3 Core. The specification defines the data structures prescribed by SBML as well as their encoding in XML, the eXtensible Markup Language. This specification also defines validation rules that determine the validity of an SBML document, and provides many examples of models in SBML form. Other materials and software are available from the SBML project web site, http://sbml.org/. Biotechnology Bergmann Frank T. verfasserin aut Hoops Stefan verfasserin aut Keating Sarah M. verfasserin aut Sahle Sven verfasserin aut Schaff James C. verfasserin aut Smith Lucian P. verfasserin aut Wilkinson Darren J. verfasserin aut In Journal of Integrative Bioinformatics De Gruyter, 2018 12(2015), 2, Seite 382-549 (DE-627)388546603 (DE-600)2147212-9 16134516 nnns volume:12 year:2015 number:2 pages:382-549 https://doi.org/10.1515/jib-2015-266 kostenfrei https://doaj.org/article/bcfe81006a55446586285ffd226ffded kostenfrei https://doi.org/10.1515/jib-2015-266 kostenfrei https://doaj.org/toc/1613-4516 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2015 2 382-549
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allfieldsGer	10.1515/jib-2015-266 doi (DE-627)DOAJ058890505 (DE-599)DOAJbcfe81006a55446586285ffd226ffded DE-627 ger DE-627 rakwb eng TP248.13-248.65 Hucka Michael verfasserin aut The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core 2015 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Computational models can help researchers to interpret data, understand biological function, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form that can be exchanged between different software systems. SBML is oriented towards describing biological processes of the sort common in research on a number of topics, including metabolic pathways, cell signaling pathways, and many others. By supporting SBML as an input/output format, different tools can all operate on an identical representation of a model, removing opportunities for translation errors and assuring a common starting point for analyses and simulations. This document provides the specification for Version 1 of SBML Level 3 Core. The specification defines the data structures prescribed by SBML as well as their encoding in XML, the eXtensible Markup Language. This specification also defines validation rules that determine the validity of an SBML document, and provides many examples of models in SBML form. Other materials and software are available from the SBML project web site, http://sbml.org/. Biotechnology Bergmann Frank T. verfasserin aut Hoops Stefan verfasserin aut Keating Sarah M. verfasserin aut Sahle Sven verfasserin aut Schaff James C. verfasserin aut Smith Lucian P. verfasserin aut Wilkinson Darren J. verfasserin aut In Journal of Integrative Bioinformatics De Gruyter, 2018 12(2015), 2, Seite 382-549 (DE-627)388546603 (DE-600)2147212-9 16134516 nnns volume:12 year:2015 number:2 pages:382-549 https://doi.org/10.1515/jib-2015-266 kostenfrei https://doaj.org/article/bcfe81006a55446586285ffd226ffded kostenfrei https://doi.org/10.1515/jib-2015-266 kostenfrei https://doaj.org/toc/1613-4516 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2015 2 382-549
allfieldsSound	10.1515/jib-2015-266 doi (DE-627)DOAJ058890505 (DE-599)DOAJbcfe81006a55446586285ffd226ffded DE-627 ger DE-627 rakwb eng TP248.13-248.65 Hucka Michael verfasserin aut The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core 2015 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Computational models can help researchers to interpret data, understand biological function, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form that can be exchanged between different software systems. SBML is oriented towards describing biological processes of the sort common in research on a number of topics, including metabolic pathways, cell signaling pathways, and many others. By supporting SBML as an input/output format, different tools can all operate on an identical representation of a model, removing opportunities for translation errors and assuring a common starting point for analyses and simulations. This document provides the specification for Version 1 of SBML Level 3 Core. The specification defines the data structures prescribed by SBML as well as their encoding in XML, the eXtensible Markup Language. This specification also defines validation rules that determine the validity of an SBML document, and provides many examples of models in SBML form. Other materials and software are available from the SBML project web site, http://sbml.org/. Biotechnology Bergmann Frank T. verfasserin aut Hoops Stefan verfasserin aut Keating Sarah M. verfasserin aut Sahle Sven verfasserin aut Schaff James C. verfasserin aut Smith Lucian P. verfasserin aut Wilkinson Darren J. verfasserin aut In Journal of Integrative Bioinformatics De Gruyter, 2018 12(2015), 2, Seite 382-549 (DE-627)388546603 (DE-600)2147212-9 16134516 nnns volume:12 year:2015 number:2 pages:382-549 https://doi.org/10.1515/jib-2015-266 kostenfrei https://doaj.org/article/bcfe81006a55446586285ffd226ffded kostenfrei https://doi.org/10.1515/jib-2015-266 kostenfrei https://doaj.org/toc/1613-4516 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2015 2 382-549
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abstract	Computational models can help researchers to interpret data, understand biological function, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form that can be exchanged between different software systems. SBML is oriented towards describing biological processes of the sort common in research on a number of topics, including metabolic pathways, cell signaling pathways, and many others. By supporting SBML as an input/output format, different tools can all operate on an identical representation of a model, removing opportunities for translation errors and assuring a common starting point for analyses and simulations. This document provides the specification for Version 1 of SBML Level 3 Core. The specification defines the data structures prescribed by SBML as well as their encoding in XML, the eXtensible Markup Language. This specification also defines validation rules that determine the validity of an SBML document, and provides many examples of models in SBML form. Other materials and software are available from the SBML project web site, http://sbml.org/.
abstractGer	Computational models can help researchers to interpret data, understand biological function, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form that can be exchanged between different software systems. SBML is oriented towards describing biological processes of the sort common in research on a number of topics, including metabolic pathways, cell signaling pathways, and many others. By supporting SBML as an input/output format, different tools can all operate on an identical representation of a model, removing opportunities for translation errors and assuring a common starting point for analyses and simulations. This document provides the specification for Version 1 of SBML Level 3 Core. The specification defines the data structures prescribed by SBML as well as their encoding in XML, the eXtensible Markup Language. This specification also defines validation rules that determine the validity of an SBML document, and provides many examples of models in SBML form. Other materials and software are available from the SBML project web site, http://sbml.org/.
abstract_unstemmed	Computational models can help researchers to interpret data, understand biological function, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form that can be exchanged between different software systems. SBML is oriented towards describing biological processes of the sort common in research on a number of topics, including metabolic pathways, cell signaling pathways, and many others. By supporting SBML as an input/output format, different tools can all operate on an identical representation of a model, removing opportunities for translation errors and assuring a common starting point for analyses and simulations. This document provides the specification for Version 1 of SBML Level 3 Core. The specification defines the data structures prescribed by SBML as well as their encoding in XML, the eXtensible Markup Language. This specification also defines validation rules that determine the validity of an SBML document, and provides many examples of models in SBML form. Other materials and software are available from the SBML project web site, http://sbml.org/.
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title_short	The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core
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