Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.
Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that obs...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Irina S Druzhinina [verfasserIn] Komal Chenthamara [verfasserIn] Jian Zhang [verfasserIn] Lea Atanasova [verfasserIn] Dongqing Yang [verfasserIn] Youzhi Miao [verfasserIn] Mohammad J Rahimi [verfasserIn] Marica Grujic [verfasserIn] Feng Cai [verfasserIn] Shadi Pourmehdi [verfasserIn] Kamariah Abu Salim [verfasserIn] Carina Pretzer [verfasserIn] Alexey G Kopchinskiy [verfasserIn] Bernard Henrissat [verfasserIn] Alan Kuo [verfasserIn] Hope Hundley [verfasserIn] Mei Wang [verfasserIn] Andrea Aerts [verfasserIn] Asaf Salamov [verfasserIn] Anna Lipzen [verfasserIn] Kurt LaButti [verfasserIn] Kerrie Barry [verfasserIn] Igor V Grigoriev [verfasserIn] Qirong Shen [verfasserIn] Christian P Kubicek [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2018 |
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| Übergeordnetes Werk: |
In: PLoS Genetics - Public Library of Science (PLoS), 2005, 14(2018), 4, p e1007322 |
|---|---|
| Übergeordnetes Werk: |
volume:14 ; year:2018 ; number:4, p e1007322 |
| Links: |
Link aufrufen |
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| DOI / URN: |
10.1371/journal.pgen.1007322 |
|---|
| Katalog-ID: |
DOAJ060585633 |
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| 245 | 1 | 0 | |a Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. |
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| 520 | |a Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass. | ||
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| 700 | 0 | |a Jian Zhang |e verfasserin |4 aut | |
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| 700 | 0 | |a Dongqing Yang |e verfasserin |4 aut | |
| 700 | 0 | |a Youzhi Miao |e verfasserin |4 aut | |
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10.1371/journal.pgen.1007322 doi (DE-627)DOAJ060585633 (DE-599)DOAJ07c1bff51aa344f6a686d3433d79133f DE-627 ger DE-627 rakwb eng QH426-470 Irina S Druzhinina verfasserin aut Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass. Genetics Komal Chenthamara verfasserin aut Jian Zhang verfasserin aut Lea Atanasova verfasserin aut Dongqing Yang verfasserin aut Youzhi Miao verfasserin aut Mohammad J Rahimi verfasserin aut Marica Grujic verfasserin aut Feng Cai verfasserin aut Shadi Pourmehdi verfasserin aut Kamariah Abu Salim verfasserin aut Carina Pretzer verfasserin aut Alexey G Kopchinskiy verfasserin aut Bernard Henrissat verfasserin aut Alan Kuo verfasserin aut Hope Hundley verfasserin aut Mei Wang verfasserin aut Andrea Aerts verfasserin aut Asaf Salamov verfasserin aut Anna Lipzen verfasserin aut Kurt LaButti verfasserin aut Kerrie Barry verfasserin aut Igor V Grigoriev verfasserin aut Qirong Shen verfasserin aut Christian P Kubicek verfasserin aut In PLoS Genetics Public Library of Science (PLoS), 2005 14(2018), 4, p e1007322 (DE-627)485248026 (DE-600)2186725-2 15537404 nnns volume:14 year:2018 number:4, p e1007322 https://doi.org/10.1371/journal.pgen.1007322 kostenfrei https://doaj.org/article/07c1bff51aa344f6a686d3433d79133f kostenfrei http://europepmc.org/articles/PMC5908196?pdf=render kostenfrei https://doaj.org/toc/1553-7390 Journal toc kostenfrei https://doaj.org/toc/1553-7404 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2018 4, p e1007322 |
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10.1371/journal.pgen.1007322 doi (DE-627)DOAJ060585633 (DE-599)DOAJ07c1bff51aa344f6a686d3433d79133f DE-627 ger DE-627 rakwb eng QH426-470 Irina S Druzhinina verfasserin aut Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass. Genetics Komal Chenthamara verfasserin aut Jian Zhang verfasserin aut Lea Atanasova verfasserin aut Dongqing Yang verfasserin aut Youzhi Miao verfasserin aut Mohammad J Rahimi verfasserin aut Marica Grujic verfasserin aut Feng Cai verfasserin aut Shadi Pourmehdi verfasserin aut Kamariah Abu Salim verfasserin aut Carina Pretzer verfasserin aut Alexey G Kopchinskiy verfasserin aut Bernard Henrissat verfasserin aut Alan Kuo verfasserin aut Hope Hundley verfasserin aut Mei Wang verfasserin aut Andrea Aerts verfasserin aut Asaf Salamov verfasserin aut Anna Lipzen verfasserin aut Kurt LaButti verfasserin aut Kerrie Barry verfasserin aut Igor V Grigoriev verfasserin aut Qirong Shen verfasserin aut Christian P Kubicek verfasserin aut In PLoS Genetics Public Library of Science (PLoS), 2005 14(2018), 4, p e1007322 (DE-627)485248026 (DE-600)2186725-2 15537404 nnns volume:14 year:2018 number:4, p e1007322 https://doi.org/10.1371/journal.pgen.1007322 kostenfrei https://doaj.org/article/07c1bff51aa344f6a686d3433d79133f kostenfrei http://europepmc.org/articles/PMC5908196?pdf=render kostenfrei https://doaj.org/toc/1553-7390 Journal toc kostenfrei https://doaj.org/toc/1553-7404 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2018 4, p e1007322 |
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10.1371/journal.pgen.1007322 doi (DE-627)DOAJ060585633 (DE-599)DOAJ07c1bff51aa344f6a686d3433d79133f DE-627 ger DE-627 rakwb eng QH426-470 Irina S Druzhinina verfasserin aut Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass. Genetics Komal Chenthamara verfasserin aut Jian Zhang verfasserin aut Lea Atanasova verfasserin aut Dongqing Yang verfasserin aut Youzhi Miao verfasserin aut Mohammad J Rahimi verfasserin aut Marica Grujic verfasserin aut Feng Cai verfasserin aut Shadi Pourmehdi verfasserin aut Kamariah Abu Salim verfasserin aut Carina Pretzer verfasserin aut Alexey G Kopchinskiy verfasserin aut Bernard Henrissat verfasserin aut Alan Kuo verfasserin aut Hope Hundley verfasserin aut Mei Wang verfasserin aut Andrea Aerts verfasserin aut Asaf Salamov verfasserin aut Anna Lipzen verfasserin aut Kurt LaButti verfasserin aut Kerrie Barry verfasserin aut Igor V Grigoriev verfasserin aut Qirong Shen verfasserin aut Christian P Kubicek verfasserin aut In PLoS Genetics Public Library of Science (PLoS), 2005 14(2018), 4, p e1007322 (DE-627)485248026 (DE-600)2186725-2 15537404 nnns volume:14 year:2018 number:4, p e1007322 https://doi.org/10.1371/journal.pgen.1007322 kostenfrei https://doaj.org/article/07c1bff51aa344f6a686d3433d79133f kostenfrei http://europepmc.org/articles/PMC5908196?pdf=render kostenfrei https://doaj.org/toc/1553-7390 Journal toc kostenfrei https://doaj.org/toc/1553-7404 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2018 4, p e1007322 |
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10.1371/journal.pgen.1007322 doi (DE-627)DOAJ060585633 (DE-599)DOAJ07c1bff51aa344f6a686d3433d79133f DE-627 ger DE-627 rakwb eng QH426-470 Irina S Druzhinina verfasserin aut Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass. Genetics Komal Chenthamara verfasserin aut Jian Zhang verfasserin aut Lea Atanasova verfasserin aut Dongqing Yang verfasserin aut Youzhi Miao verfasserin aut Mohammad J Rahimi verfasserin aut Marica Grujic verfasserin aut Feng Cai verfasserin aut Shadi Pourmehdi verfasserin aut Kamariah Abu Salim verfasserin aut Carina Pretzer verfasserin aut Alexey G Kopchinskiy verfasserin aut Bernard Henrissat verfasserin aut Alan Kuo verfasserin aut Hope Hundley verfasserin aut Mei Wang verfasserin aut Andrea Aerts verfasserin aut Asaf Salamov verfasserin aut Anna Lipzen verfasserin aut Kurt LaButti verfasserin aut Kerrie Barry verfasserin aut Igor V Grigoriev verfasserin aut Qirong Shen verfasserin aut Christian P Kubicek verfasserin aut In PLoS Genetics Public Library of Science (PLoS), 2005 14(2018), 4, p e1007322 (DE-627)485248026 (DE-600)2186725-2 15537404 nnns volume:14 year:2018 number:4, p e1007322 https://doi.org/10.1371/journal.pgen.1007322 kostenfrei https://doaj.org/article/07c1bff51aa344f6a686d3433d79133f kostenfrei http://europepmc.org/articles/PMC5908196?pdf=render kostenfrei https://doaj.org/toc/1553-7390 Journal toc kostenfrei https://doaj.org/toc/1553-7404 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2018 4, p e1007322 |
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10.1371/journal.pgen.1007322 doi (DE-627)DOAJ060585633 (DE-599)DOAJ07c1bff51aa344f6a686d3433d79133f DE-627 ger DE-627 rakwb eng QH426-470 Irina S Druzhinina verfasserin aut Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass. Genetics Komal Chenthamara verfasserin aut Jian Zhang verfasserin aut Lea Atanasova verfasserin aut Dongqing Yang verfasserin aut Youzhi Miao verfasserin aut Mohammad J Rahimi verfasserin aut Marica Grujic verfasserin aut Feng Cai verfasserin aut Shadi Pourmehdi verfasserin aut Kamariah Abu Salim verfasserin aut Carina Pretzer verfasserin aut Alexey G Kopchinskiy verfasserin aut Bernard Henrissat verfasserin aut Alan Kuo verfasserin aut Hope Hundley verfasserin aut Mei Wang verfasserin aut Andrea Aerts verfasserin aut Asaf Salamov verfasserin aut Anna Lipzen verfasserin aut Kurt LaButti verfasserin aut Kerrie Barry verfasserin aut Igor V Grigoriev verfasserin aut Qirong Shen verfasserin aut Christian P Kubicek verfasserin aut In PLoS Genetics Public Library of Science (PLoS), 2005 14(2018), 4, p e1007322 (DE-627)485248026 (DE-600)2186725-2 15537404 nnns volume:14 year:2018 number:4, p e1007322 https://doi.org/10.1371/journal.pgen.1007322 kostenfrei https://doaj.org/article/07c1bff51aa344f6a686d3433d79133f kostenfrei http://europepmc.org/articles/PMC5908196?pdf=render kostenfrei https://doaj.org/toc/1553-7390 Journal toc kostenfrei https://doaj.org/toc/1553-7404 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2018 4, p e1007322 |
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Irina S Druzhinina @@aut@@ Komal Chenthamara @@aut@@ Jian Zhang @@aut@@ Lea Atanasova @@aut@@ Dongqing Yang @@aut@@ Youzhi Miao @@aut@@ Mohammad J Rahimi @@aut@@ Marica Grujic @@aut@@ Feng Cai @@aut@@ Shadi Pourmehdi @@aut@@ Kamariah Abu Salim @@aut@@ Carina Pretzer @@aut@@ Alexey G Kopchinskiy @@aut@@ Bernard Henrissat @@aut@@ Alan Kuo @@aut@@ Hope Hundley @@aut@@ Mei Wang @@aut@@ Andrea Aerts @@aut@@ Asaf Salamov @@aut@@ Anna Lipzen @@aut@@ Kurt LaButti @@aut@@ Kerrie Barry @@aut@@ Igor V Grigoriev @@aut@@ Qirong Shen @@aut@@ Christian P Kubicek @@aut@@ |
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Irina S Druzhinina |
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massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus trichoderma from its plant-associated hosts |
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. |
| abstract |
Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass. |
| abstractGer |
Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass. |
| abstract_unstemmed |
Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass. |
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. |
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