Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium
Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However,...
Ausführliche Beschreibung
Autor*in: |
Fernando Uriel Rojas-Rojas [verfasserIn] Erika Yanet Tapia-García [verfasserIn] Maskit Maymon [verfasserIn] Ethan Humm [verfasserIn] Marcel Huntemann [verfasserIn] Alicia Clum [verfasserIn] Manoj Pillay [verfasserIn] Krishnaveni Palaniappan [verfasserIn] Neha Varghese [verfasserIn] Natalia Mikhailova [verfasserIn] Dimitrios Stamatis [verfasserIn] T. B. K. Reddy [verfasserIn] Victor Markowitz [verfasserIn] Natalia Ivanova [verfasserIn] Nikos Kyrpides [verfasserIn] Tanja Woyke [verfasserIn] Nicole Shapiro [verfasserIn] Ann M. Hirsch [verfasserIn] Paulina Estrada-de los Santos [verfasserIn] |
---|
Format: |
E-Artikel |
---|---|
Sprache: |
Englisch |
Erschienen: |
2017 |
---|
Schlagwörter: |
---|
Übergeordnetes Werk: |
In: Standards in Genomic Sciences - BMC, 2015, 12(2017), 1, Seite 8 |
---|---|
Übergeordnetes Werk: |
volume:12 ; year:2017 ; number:1 ; pages:8 |
Links: |
---|
DOI / URN: |
10.1186/s40793-017-0294-7 |
---|
Katalog-ID: |
DOAJ067634079 |
---|
LEADER | 01000caa a22002652 4500 | ||
---|---|---|---|
001 | DOAJ067634079 | ||
003 | DE-627 | ||
005 | 20230309071546.0 | ||
007 | cr uuu---uuuuu | ||
008 | 230228s2017 xx |||||o 00| ||eng c | ||
024 | 7 | |a 10.1186/s40793-017-0294-7 |2 doi | |
035 | |a (DE-627)DOAJ067634079 | ||
035 | |a (DE-599)DOAJ258cac539b2e4f01af1f4a6c0a405e97 | ||
040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
041 | |a eng | ||
050 | 0 | |a QH426-470 | |
100 | 0 | |a Fernando Uriel Rojas-Rojas |e verfasserin |4 aut | |
245 | 1 | 0 | |a Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium |
264 | 1 | |c 2017 | |
336 | |a Text |b txt |2 rdacontent | ||
337 | |a Computermedien |b c |2 rdamedia | ||
338 | |a Online-Ressource |b cr |2 rdacarrier | ||
520 | |a Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. | ||
650 | 4 | |a Paraburkholderia caballeronis | |
650 | 4 | |a Tomato plant | |
650 | 4 | |a Rhizosphere | |
650 | 4 | |a Nitrogen fixation | |
650 | 4 | |a Root nodulation | |
653 | 0 | |a Genetics | |
700 | 0 | |a Erika Yanet Tapia-García |e verfasserin |4 aut | |
700 | 0 | |a Maskit Maymon |e verfasserin |4 aut | |
700 | 0 | |a Ethan Humm |e verfasserin |4 aut | |
700 | 0 | |a Marcel Huntemann |e verfasserin |4 aut | |
700 | 0 | |a Alicia Clum |e verfasserin |4 aut | |
700 | 0 | |a Manoj Pillay |e verfasserin |4 aut | |
700 | 0 | |a Krishnaveni Palaniappan |e verfasserin |4 aut | |
700 | 0 | |a Neha Varghese |e verfasserin |4 aut | |
700 | 0 | |a Natalia Mikhailova |e verfasserin |4 aut | |
700 | 0 | |a Dimitrios Stamatis |e verfasserin |4 aut | |
700 | 0 | |a T. B. K. Reddy |e verfasserin |4 aut | |
700 | 0 | |a Victor Markowitz |e verfasserin |4 aut | |
700 | 0 | |a Natalia Ivanova |e verfasserin |4 aut | |
700 | 0 | |a Nikos Kyrpides |e verfasserin |4 aut | |
700 | 0 | |a Tanja Woyke |e verfasserin |4 aut | |
700 | 0 | |a Nicole Shapiro |e verfasserin |4 aut | |
700 | 0 | |a Ann M. Hirsch |e verfasserin |4 aut | |
700 | 0 | |a Paulina Estrada-de los Santos |e verfasserin |4 aut | |
773 | 0 | 8 | |i In |t Standards in Genomic Sciences |d BMC, 2015 |g 12(2017), 1, Seite 8 |w (DE-627)642436444 |w (DE-600)2586662-X |x 19443277 |7 nnns |
773 | 1 | 8 | |g volume:12 |g year:2017 |g number:1 |g pages:8 |
856 | 4 | 0 | |u https://doi.org/10.1186/s40793-017-0294-7 |z kostenfrei |
856 | 4 | 0 | |u https://doaj.org/article/258cac539b2e4f01af1f4a6c0a405e97 |z kostenfrei |
856 | 4 | 0 | |u http://link.springer.com/article/10.1186/s40793-017-0294-7 |z kostenfrei |
856 | 4 | 2 | |u https://doaj.org/toc/1944-3277 |y Journal toc |z kostenfrei |
912 | |a GBV_USEFLAG_A | ||
912 | |a SYSFLAG_A | ||
912 | |a GBV_DOAJ | ||
912 | |a GBV_ILN_20 | ||
912 | |a GBV_ILN_21 | ||
912 | |a GBV_ILN_22 | ||
912 | |a GBV_ILN_23 | ||
912 | |a GBV_ILN_24 | ||
912 | |a GBV_ILN_31 | ||
912 | |a GBV_ILN_39 | ||
912 | |a GBV_ILN_40 | ||
912 | |a GBV_ILN_62 | ||
912 | |a GBV_ILN_63 | ||
912 | |a GBV_ILN_65 | ||
912 | |a GBV_ILN_69 | ||
912 | |a GBV_ILN_70 | ||
912 | |a GBV_ILN_73 | ||
912 | |a GBV_ILN_74 | ||
912 | |a GBV_ILN_95 | ||
912 | |a GBV_ILN_105 | ||
912 | |a GBV_ILN_110 | ||
912 | |a GBV_ILN_151 | ||
912 | |a GBV_ILN_161 | ||
912 | |a GBV_ILN_170 | ||
912 | |a GBV_ILN_213 | ||
912 | |a GBV_ILN_230 | ||
912 | |a GBV_ILN_285 | ||
912 | |a GBV_ILN_293 | ||
912 | |a GBV_ILN_602 | ||
912 | |a GBV_ILN_2005 | ||
912 | |a GBV_ILN_2009 | ||
912 | |a GBV_ILN_2014 | ||
912 | |a GBV_ILN_2055 | ||
912 | |a GBV_ILN_2111 | ||
912 | |a GBV_ILN_4012 | ||
912 | |a GBV_ILN_4037 | ||
912 | |a GBV_ILN_4112 | ||
912 | |a GBV_ILN_4125 | ||
912 | |a GBV_ILN_4126 | ||
912 | |a GBV_ILN_4249 | ||
912 | |a GBV_ILN_4305 | ||
912 | |a GBV_ILN_4306 | ||
912 | |a GBV_ILN_4307 | ||
912 | |a GBV_ILN_4313 | ||
912 | |a GBV_ILN_4322 | ||
912 | |a GBV_ILN_4323 | ||
912 | |a GBV_ILN_4324 | ||
912 | |a GBV_ILN_4325 | ||
912 | |a GBV_ILN_4338 | ||
912 | |a GBV_ILN_4367 | ||
912 | |a GBV_ILN_4700 | ||
951 | |a AR | ||
952 | |d 12 |j 2017 |e 1 |h 8 |
author_variant |
f u r r furr e y t g eytg m m mm e h eh m h mh a c ac m p mp k p kp n v nv n m nm d s ds t b k r tbkr v m vm n i ni n k nk t w tw n s ns a m h amh p e d l s pedls |
---|---|
matchkey_str |
article:19443277:2017----::rfgnmoprbrhleicbleoite4tfelvnntoefxnt |
hierarchy_sort_str |
2017 |
callnumber-subject-code |
QH |
publishDate |
2017 |
allfields |
10.1186/s40793-017-0294-7 doi (DE-627)DOAJ067634079 (DE-599)DOAJ258cac539b2e4f01af1f4a6c0a405e97 DE-627 ger DE-627 rakwb eng QH426-470 Fernando Uriel Rojas-Rojas verfasserin aut Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. Paraburkholderia caballeronis Tomato plant Rhizosphere Nitrogen fixation Root nodulation Genetics Erika Yanet Tapia-García verfasserin aut Maskit Maymon verfasserin aut Ethan Humm verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Nicole Shapiro verfasserin aut Ann M. Hirsch verfasserin aut Paulina Estrada-de los Santos verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 8 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:8 https://doi.org/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/article/258cac539b2e4f01af1f4a6c0a405e97 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 8 |
spelling |
10.1186/s40793-017-0294-7 doi (DE-627)DOAJ067634079 (DE-599)DOAJ258cac539b2e4f01af1f4a6c0a405e97 DE-627 ger DE-627 rakwb eng QH426-470 Fernando Uriel Rojas-Rojas verfasserin aut Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. Paraburkholderia caballeronis Tomato plant Rhizosphere Nitrogen fixation Root nodulation Genetics Erika Yanet Tapia-García verfasserin aut Maskit Maymon verfasserin aut Ethan Humm verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Nicole Shapiro verfasserin aut Ann M. Hirsch verfasserin aut Paulina Estrada-de los Santos verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 8 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:8 https://doi.org/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/article/258cac539b2e4f01af1f4a6c0a405e97 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 8 |
allfields_unstemmed |
10.1186/s40793-017-0294-7 doi (DE-627)DOAJ067634079 (DE-599)DOAJ258cac539b2e4f01af1f4a6c0a405e97 DE-627 ger DE-627 rakwb eng QH426-470 Fernando Uriel Rojas-Rojas verfasserin aut Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. Paraburkholderia caballeronis Tomato plant Rhizosphere Nitrogen fixation Root nodulation Genetics Erika Yanet Tapia-García verfasserin aut Maskit Maymon verfasserin aut Ethan Humm verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Nicole Shapiro verfasserin aut Ann M. Hirsch verfasserin aut Paulina Estrada-de los Santos verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 8 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:8 https://doi.org/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/article/258cac539b2e4f01af1f4a6c0a405e97 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 8 |
allfieldsGer |
10.1186/s40793-017-0294-7 doi (DE-627)DOAJ067634079 (DE-599)DOAJ258cac539b2e4f01af1f4a6c0a405e97 DE-627 ger DE-627 rakwb eng QH426-470 Fernando Uriel Rojas-Rojas verfasserin aut Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. Paraburkholderia caballeronis Tomato plant Rhizosphere Nitrogen fixation Root nodulation Genetics Erika Yanet Tapia-García verfasserin aut Maskit Maymon verfasserin aut Ethan Humm verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Nicole Shapiro verfasserin aut Ann M. Hirsch verfasserin aut Paulina Estrada-de los Santos verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 8 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:8 https://doi.org/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/article/258cac539b2e4f01af1f4a6c0a405e97 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 8 |
allfieldsSound |
10.1186/s40793-017-0294-7 doi (DE-627)DOAJ067634079 (DE-599)DOAJ258cac539b2e4f01af1f4a6c0a405e97 DE-627 ger DE-627 rakwb eng QH426-470 Fernando Uriel Rojas-Rojas verfasserin aut Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium 2017 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. Paraburkholderia caballeronis Tomato plant Rhizosphere Nitrogen fixation Root nodulation Genetics Erika Yanet Tapia-García verfasserin aut Maskit Maymon verfasserin aut Ethan Humm verfasserin aut Marcel Huntemann verfasserin aut Alicia Clum verfasserin aut Manoj Pillay verfasserin aut Krishnaveni Palaniappan verfasserin aut Neha Varghese verfasserin aut Natalia Mikhailova verfasserin aut Dimitrios Stamatis verfasserin aut T. B. K. Reddy verfasserin aut Victor Markowitz verfasserin aut Natalia Ivanova verfasserin aut Nikos Kyrpides verfasserin aut Tanja Woyke verfasserin aut Nicole Shapiro verfasserin aut Ann M. Hirsch verfasserin aut Paulina Estrada-de los Santos verfasserin aut In Standards in Genomic Sciences BMC, 2015 12(2017), 1, Seite 8 (DE-627)642436444 (DE-600)2586662-X 19443277 nnns volume:12 year:2017 number:1 pages:8 https://doi.org/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/article/258cac539b2e4f01af1f4a6c0a405e97 kostenfrei http://link.springer.com/article/10.1186/s40793-017-0294-7 kostenfrei https://doaj.org/toc/1944-3277 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2017 1 8 |
language |
English |
source |
In Standards in Genomic Sciences 12(2017), 1, Seite 8 volume:12 year:2017 number:1 pages:8 |
sourceStr |
In Standards in Genomic Sciences 12(2017), 1, Seite 8 volume:12 year:2017 number:1 pages:8 |
format_phy_str_mv |
Article |
institution |
findex.gbv.de |
topic_facet |
Paraburkholderia caballeronis Tomato plant Rhizosphere Nitrogen fixation Root nodulation Genetics |
isfreeaccess_bool |
true |
container_title |
Standards in Genomic Sciences |
authorswithroles_txt_mv |
Fernando Uriel Rojas-Rojas @@aut@@ Erika Yanet Tapia-García @@aut@@ Maskit Maymon @@aut@@ Ethan Humm @@aut@@ Marcel Huntemann @@aut@@ Alicia Clum @@aut@@ Manoj Pillay @@aut@@ Krishnaveni Palaniappan @@aut@@ Neha Varghese @@aut@@ Natalia Mikhailova @@aut@@ Dimitrios Stamatis @@aut@@ T. B. K. Reddy @@aut@@ Victor Markowitz @@aut@@ Natalia Ivanova @@aut@@ Nikos Kyrpides @@aut@@ Tanja Woyke @@aut@@ Nicole Shapiro @@aut@@ Ann M. Hirsch @@aut@@ Paulina Estrada-de los Santos @@aut@@ |
publishDateDaySort_date |
2017-01-01T00:00:00Z |
hierarchy_top_id |
642436444 |
id |
DOAJ067634079 |
language_de |
englisch |
fullrecord |
<?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>01000caa a22002652 4500</leader><controlfield tag="001">DOAJ067634079</controlfield><controlfield tag="003">DE-627</controlfield><controlfield tag="005">20230309071546.0</controlfield><controlfield tag="007">cr uuu---uuuuu</controlfield><controlfield tag="008">230228s2017 xx |||||o 00| ||eng c</controlfield><datafield tag="024" ind1="7" ind2=" "><subfield code="a">10.1186/s40793-017-0294-7</subfield><subfield code="2">doi</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-627)DOAJ067634079</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-599)DOAJ258cac539b2e4f01af1f4a6c0a405e97</subfield></datafield><datafield tag="040" ind1=" " ind2=" "><subfield code="a">DE-627</subfield><subfield code="b">ger</subfield><subfield code="c">DE-627</subfield><subfield code="e">rakwb</subfield></datafield><datafield tag="041" ind1=" " ind2=" "><subfield code="a">eng</subfield></datafield><datafield tag="050" ind1=" " ind2="0"><subfield code="a">QH426-470</subfield></datafield><datafield tag="100" ind1="0" ind2=" "><subfield code="a">Fernando Uriel Rojas-Rojas</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="245" ind1="1" ind2="0"><subfield code="a">Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium</subfield></datafield><datafield tag="264" ind1=" " ind2="1"><subfield code="c">2017</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="a">Text</subfield><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="a">Computermedien</subfield><subfield code="b">c</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="a">Online-Ressource</subfield><subfield code="b">cr</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes.</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Paraburkholderia caballeronis</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Tomato plant</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Rhizosphere</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Nitrogen fixation</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Root nodulation</subfield></datafield><datafield tag="653" ind1=" " ind2="0"><subfield code="a">Genetics</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Erika Yanet Tapia-García</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Maskit Maymon</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Ethan Humm</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Marcel Huntemann</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Alicia Clum</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Manoj Pillay</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Krishnaveni Palaniappan</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Neha Varghese</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Natalia Mikhailova</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Dimitrios Stamatis</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">T. B. K. Reddy</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Victor Markowitz</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Natalia Ivanova</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Nikos Kyrpides</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Tanja Woyke</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Nicole Shapiro</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Ann M. Hirsch</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Paulina Estrada-de los Santos</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="773" ind1="0" ind2="8"><subfield code="i">In</subfield><subfield code="t">Standards in Genomic Sciences</subfield><subfield code="d">BMC, 2015</subfield><subfield code="g">12(2017), 1, Seite 8</subfield><subfield code="w">(DE-627)642436444</subfield><subfield code="w">(DE-600)2586662-X</subfield><subfield code="x">19443277</subfield><subfield code="7">nnns</subfield></datafield><datafield tag="773" ind1="1" ind2="8"><subfield code="g">volume:12</subfield><subfield code="g">year:2017</subfield><subfield code="g">number:1</subfield><subfield code="g">pages:8</subfield></datafield><datafield tag="856" ind1="4" ind2="0"><subfield code="u">https://doi.org/10.1186/s40793-017-0294-7</subfield><subfield code="z">kostenfrei</subfield></datafield><datafield tag="856" ind1="4" ind2="0"><subfield code="u">https://doaj.org/article/258cac539b2e4f01af1f4a6c0a405e97</subfield><subfield code="z">kostenfrei</subfield></datafield><datafield tag="856" ind1="4" ind2="0"><subfield code="u">http://link.springer.com/article/10.1186/s40793-017-0294-7</subfield><subfield code="z">kostenfrei</subfield></datafield><datafield tag="856" ind1="4" ind2="2"><subfield code="u">https://doaj.org/toc/1944-3277</subfield><subfield code="y">Journal toc</subfield><subfield code="z">kostenfrei</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_USEFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SYSFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_DOAJ</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_20</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_21</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_22</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_23</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_24</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_31</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_39</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_40</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_62</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_63</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_65</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_69</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_70</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_73</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_74</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_95</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_105</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_110</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_151</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_161</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_170</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_213</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_230</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_285</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_293</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_602</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2005</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2009</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2014</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2055</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2111</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4012</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4037</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4112</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4125</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4126</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4249</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4305</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4306</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4307</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4313</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4322</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4323</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4324</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4325</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4338</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4367</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4700</subfield></datafield><datafield tag="951" ind1=" " ind2=" "><subfield code="a">AR</subfield></datafield><datafield tag="952" ind1=" " ind2=" "><subfield code="d">12</subfield><subfield code="j">2017</subfield><subfield code="e">1</subfield><subfield code="h">8</subfield></datafield></record></collection>
|
callnumber-first |
Q - Science |
author |
Fernando Uriel Rojas-Rojas |
spellingShingle |
Fernando Uriel Rojas-Rojas misc QH426-470 misc Paraburkholderia caballeronis misc Tomato plant misc Rhizosphere misc Nitrogen fixation misc Root nodulation misc Genetics Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium |
authorStr |
Fernando Uriel Rojas-Rojas |
ppnlink_with_tag_str_mv |
@@773@@(DE-627)642436444 |
format |
electronic Article |
delete_txt_mv |
keep |
author_role |
aut aut aut aut aut aut aut aut aut aut aut aut aut aut aut aut aut aut aut |
collection |
DOAJ |
remote_str |
true |
callnumber-label |
QH426-470 |
illustrated |
Not Illustrated |
issn |
19443277 |
topic_title |
QH426-470 Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium Paraburkholderia caballeronis Tomato plant Rhizosphere Nitrogen fixation Root nodulation |
topic |
misc QH426-470 misc Paraburkholderia caballeronis misc Tomato plant misc Rhizosphere misc Nitrogen fixation misc Root nodulation misc Genetics |
topic_unstemmed |
misc QH426-470 misc Paraburkholderia caballeronis misc Tomato plant misc Rhizosphere misc Nitrogen fixation misc Root nodulation misc Genetics |
topic_browse |
misc QH426-470 misc Paraburkholderia caballeronis misc Tomato plant misc Rhizosphere misc Nitrogen fixation misc Root nodulation misc Genetics |
format_facet |
Elektronische Aufsätze Aufsätze Elektronische Ressource |
format_main_str_mv |
Text Zeitschrift/Artikel |
carriertype_str_mv |
cr |
hierarchy_parent_title |
Standards in Genomic Sciences |
hierarchy_parent_id |
642436444 |
hierarchy_top_title |
Standards in Genomic Sciences |
isfreeaccess_txt |
true |
familylinks_str_mv |
(DE-627)642436444 (DE-600)2586662-X |
title |
Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium |
ctrlnum |
(DE-627)DOAJ067634079 (DE-599)DOAJ258cac539b2e4f01af1f4a6c0a405e97 |
title_full |
Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium |
author_sort |
Fernando Uriel Rojas-Rojas |
journal |
Standards in Genomic Sciences |
journalStr |
Standards in Genomic Sciences |
callnumber-first-code |
Q |
lang_code |
eng |
isOA_bool |
true |
recordtype |
marc |
publishDateSort |
2017 |
contenttype_str_mv |
txt |
container_start_page |
8 |
author_browse |
Fernando Uriel Rojas-Rojas Erika Yanet Tapia-García Maskit Maymon Ethan Humm Marcel Huntemann Alicia Clum Manoj Pillay Krishnaveni Palaniappan Neha Varghese Natalia Mikhailova Dimitrios Stamatis T. B. K. Reddy Victor Markowitz Natalia Ivanova Nikos Kyrpides Tanja Woyke Nicole Shapiro Ann M. Hirsch Paulina Estrada-de los Santos |
container_volume |
12 |
class |
QH426-470 |
format_se |
Elektronische Aufsätze |
author-letter |
Fernando Uriel Rojas-Rojas |
doi_str_mv |
10.1186/s40793-017-0294-7 |
author2-role |
verfasserin |
title_sort |
draft genome of paraburkholderia caballeronis tne-841t, a free-living, nitrogen-fixing, tomato plant-associated bacterium |
callnumber |
QH426-470 |
title_auth |
Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium |
abstract |
Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. |
abstractGer |
Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. |
abstract_unstemmed |
Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes. |
collection_details |
GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_21 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 |
container_issue |
1 |
title_short |
Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium |
url |
https://doi.org/10.1186/s40793-017-0294-7 https://doaj.org/article/258cac539b2e4f01af1f4a6c0a405e97 http://link.springer.com/article/10.1186/s40793-017-0294-7 https://doaj.org/toc/1944-3277 |
remote_bool |
true |
author2 |
Erika Yanet Tapia-García Maskit Maymon Ethan Humm Marcel Huntemann Alicia Clum Manoj Pillay Krishnaveni Palaniappan Neha Varghese Natalia Mikhailova Dimitrios Stamatis T. B. K. Reddy Victor Markowitz Natalia Ivanova Nikos Kyrpides Tanja Woyke Nicole Shapiro Ann M. Hirsch Paulina Estrada-de los Santos |
author2Str |
Erika Yanet Tapia-García Maskit Maymon Ethan Humm Marcel Huntemann Alicia Clum Manoj Pillay Krishnaveni Palaniappan Neha Varghese Natalia Mikhailova Dimitrios Stamatis T. B. K. Reddy Victor Markowitz Natalia Ivanova Nikos Kyrpides Tanja Woyke Nicole Shapiro Ann M. Hirsch Paulina Estrada-de los Santos |
ppnlink |
642436444 |
callnumber-subject |
QH - Natural History and Biology |
mediatype_str_mv |
c |
isOA_txt |
true |
hochschulschrift_bool |
false |
doi_str |
10.1186/s40793-017-0294-7 |
callnumber-a |
QH426-470 |
up_date |
2024-07-04T01:41:50.253Z |
_version_ |
1803610814158995456 |
fullrecord_marcxml |
<?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>01000caa a22002652 4500</leader><controlfield tag="001">DOAJ067634079</controlfield><controlfield tag="003">DE-627</controlfield><controlfield tag="005">20230309071546.0</controlfield><controlfield tag="007">cr uuu---uuuuu</controlfield><controlfield tag="008">230228s2017 xx |||||o 00| ||eng c</controlfield><datafield tag="024" ind1="7" ind2=" "><subfield code="a">10.1186/s40793-017-0294-7</subfield><subfield code="2">doi</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-627)DOAJ067634079</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-599)DOAJ258cac539b2e4f01af1f4a6c0a405e97</subfield></datafield><datafield tag="040" ind1=" " ind2=" "><subfield code="a">DE-627</subfield><subfield code="b">ger</subfield><subfield code="c">DE-627</subfield><subfield code="e">rakwb</subfield></datafield><datafield tag="041" ind1=" " ind2=" "><subfield code="a">eng</subfield></datafield><datafield tag="050" ind1=" " ind2="0"><subfield code="a">QH426-470</subfield></datafield><datafield tag="100" ind1="0" ind2=" "><subfield code="a">Fernando Uriel Rojas-Rojas</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="245" ind1="1" ind2="0"><subfield code="a">Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium</subfield></datafield><datafield tag="264" ind1=" " ind2="1"><subfield code="c">2017</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="a">Text</subfield><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="a">Computermedien</subfield><subfield code="b">c</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="a">Online-Ressource</subfield><subfield code="b">cr</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Abstract Paraburkholderia caballeronis is a plant-associated bacterium. Strain TNe-841T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes.</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Paraburkholderia caballeronis</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Tomato plant</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Rhizosphere</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Nitrogen fixation</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Root nodulation</subfield></datafield><datafield tag="653" ind1=" " ind2="0"><subfield code="a">Genetics</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Erika Yanet Tapia-García</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Maskit Maymon</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Ethan Humm</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Marcel Huntemann</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Alicia Clum</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Manoj Pillay</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Krishnaveni Palaniappan</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Neha Varghese</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Natalia Mikhailova</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Dimitrios Stamatis</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">T. B. K. Reddy</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Victor Markowitz</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Natalia Ivanova</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Nikos Kyrpides</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Tanja Woyke</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Nicole Shapiro</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Ann M. Hirsch</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="0" ind2=" "><subfield code="a">Paulina Estrada-de los Santos</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="773" ind1="0" ind2="8"><subfield code="i">In</subfield><subfield code="t">Standards in Genomic Sciences</subfield><subfield code="d">BMC, 2015</subfield><subfield code="g">12(2017), 1, Seite 8</subfield><subfield code="w">(DE-627)642436444</subfield><subfield code="w">(DE-600)2586662-X</subfield><subfield code="x">19443277</subfield><subfield code="7">nnns</subfield></datafield><datafield tag="773" ind1="1" ind2="8"><subfield code="g">volume:12</subfield><subfield code="g">year:2017</subfield><subfield code="g">number:1</subfield><subfield code="g">pages:8</subfield></datafield><datafield tag="856" ind1="4" ind2="0"><subfield code="u">https://doi.org/10.1186/s40793-017-0294-7</subfield><subfield code="z">kostenfrei</subfield></datafield><datafield tag="856" ind1="4" ind2="0"><subfield code="u">https://doaj.org/article/258cac539b2e4f01af1f4a6c0a405e97</subfield><subfield code="z">kostenfrei</subfield></datafield><datafield tag="856" ind1="4" ind2="0"><subfield code="u">http://link.springer.com/article/10.1186/s40793-017-0294-7</subfield><subfield code="z">kostenfrei</subfield></datafield><datafield tag="856" ind1="4" ind2="2"><subfield code="u">https://doaj.org/toc/1944-3277</subfield><subfield code="y">Journal toc</subfield><subfield code="z">kostenfrei</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_USEFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SYSFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_DOAJ</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_20</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_21</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_22</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_23</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_24</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_31</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_39</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_40</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_62</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_63</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_65</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_69</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_70</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_73</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_74</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_95</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_105</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_110</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_151</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_161</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_170</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_213</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_230</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_285</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_293</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_602</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2005</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2009</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2014</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2055</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_2111</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4012</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4037</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4112</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4125</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4126</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4249</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4305</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4306</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4307</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4313</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4322</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4323</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4324</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4325</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4338</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4367</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4700</subfield></datafield><datafield tag="951" ind1=" " ind2=" "><subfield code="a">AR</subfield></datafield><datafield tag="952" ind1=" " ind2=" "><subfield code="d">12</subfield><subfield code="j">2017</subfield><subfield code="e">1</subfield><subfield code="h">8</subfield></datafield></record></collection>
|
score |
7.4003897 |