Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress

Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previous...
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Autor*in:	Yan Chen [verfasserIn] Xuyao Zhao [verfasserIn] Gaojie Li [verfasserIn] Sunjeet Kumar [verfasserIn] Zuoliang Sun [verfasserIn] Yixian Li [verfasserIn] Wenjun Guo [verfasserIn] Jingjing Yang [verfasserIn] Hongwei Hou [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2021

Schlagwörter:	promoter Cd Fe or Mn limiting gene expression profiling

Übergeordnetes Werk:	In: International Journal of Molecular Sciences - MDPI AG, 2003, 22(2021), 12, p 6414
Übergeordnetes Werk:	volume:22 ; year:2021 ; number:12, p 6414

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc Journal toc

DOI / URN:	10.3390/ijms22126414

Katalog-ID:	DOAJ068227671

Internformat


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520			\|a Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previously reported in detail. To identify the <i<Nramp</i< genes in <i<S. polyrhiza</i<, we performed genome-wide identification, characterization, classification, and cis-elements analysis among 22 species with 138 amino acid sequences. We also conducted chromosomal localization and analyzed the synteny relationship, promoter, subcellular localization, and expression patterns in <i<S. polyrhiza</i<. β-Glucuronidase staining indicated that <i<SpNramp</i<<i<1</i< and <i<SpNramp3</i< mainly accumulated in the root and joint between mother and daughter frond. Moreover, <i<SpNramp1</i< was also widely displayed in the frond. <i<SpNramp2</i< was intensively distributed in the root and frond. Quantitative real-time PCR results proved that the <i<SpNramp</i< gene expression level was influenced by Cd stress, especially in response to Fe or Mn deficiency. The study provides detailed information on the <i<SpNramp</i< gene family and their distribution and expression, laying a beneficial foundation for functional research.
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Indexfelder

author_variant	y c yc x z xz g l gl s k sk z s zs y l yl w g wg j y jy h h hh
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allfields	10.3390/ijms22126414 doi (DE-627)DOAJ068227671 (DE-599)DOAJ4cace470d41246a69991c50d31ae1fea DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yan Chen verfasserin aut Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previously reported in detail. To identify the <i<Nramp</i< genes in <i<S. polyrhiza</i<, we performed genome-wide identification, characterization, classification, and cis-elements analysis among 22 species with 138 amino acid sequences. We also conducted chromosomal localization and analyzed the synteny relationship, promoter, subcellular localization, and expression patterns in <i<S. polyrhiza</i<. β-Glucuronidase staining indicated that <i<SpNramp</i<<i<1</i< and <i<SpNramp3</i< mainly accumulated in the root and joint between mother and daughter frond. Moreover, <i<SpNramp1</i< was also widely displayed in the frond. <i<SpNramp2</i< was intensively distributed in the root and frond. Quantitative real-time PCR results proved that the <i<SpNramp</i< gene expression level was influenced by Cd stress, especially in response to Fe or Mn deficiency. The study provides detailed information on the <i<SpNramp</i< gene family and their distribution and expression, laying a beneficial foundation for functional research. <i<Spirodela polyrhiza</i< <i<Nramp</i< family promoter Cd Fe or Mn limiting gene expression profiling Biology (General) Chemistry Xuyao Zhao verfasserin aut Gaojie Li verfasserin aut Sunjeet Kumar verfasserin aut Zuoliang Sun verfasserin aut Yixian Li verfasserin aut Wenjun Guo verfasserin aut Jingjing Yang verfasserin aut Hongwei Hou verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 22(2021), 12, p 6414 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:22 year:2021 number:12, p 6414 https://doi.org/10.3390/ijms22126414 kostenfrei https://doaj.org/article/4cace470d41246a69991c50d31ae1fea kostenfrei https://www.mdpi.com/1422-0067/22/12/6414 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 22 2021 12, p 6414
spelling	10.3390/ijms22126414 doi (DE-627)DOAJ068227671 (DE-599)DOAJ4cace470d41246a69991c50d31ae1fea DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yan Chen verfasserin aut Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previously reported in detail. To identify the <i<Nramp</i< genes in <i<S. polyrhiza</i<, we performed genome-wide identification, characterization, classification, and cis-elements analysis among 22 species with 138 amino acid sequences. We also conducted chromosomal localization and analyzed the synteny relationship, promoter, subcellular localization, and expression patterns in <i<S. polyrhiza</i<. β-Glucuronidase staining indicated that <i<SpNramp</i<<i<1</i< and <i<SpNramp3</i< mainly accumulated in the root and joint between mother and daughter frond. Moreover, <i<SpNramp1</i< was also widely displayed in the frond. <i<SpNramp2</i< was intensively distributed in the root and frond. Quantitative real-time PCR results proved that the <i<SpNramp</i< gene expression level was influenced by Cd stress, especially in response to Fe or Mn deficiency. The study provides detailed information on the <i<SpNramp</i< gene family and their distribution and expression, laying a beneficial foundation for functional research. <i<Spirodela polyrhiza</i< <i<Nramp</i< family promoter Cd Fe or Mn limiting gene expression profiling Biology (General) Chemistry Xuyao Zhao verfasserin aut Gaojie Li verfasserin aut Sunjeet Kumar verfasserin aut Zuoliang Sun verfasserin aut Yixian Li verfasserin aut Wenjun Guo verfasserin aut Jingjing Yang verfasserin aut Hongwei Hou verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 22(2021), 12, p 6414 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:22 year:2021 number:12, p 6414 https://doi.org/10.3390/ijms22126414 kostenfrei https://doaj.org/article/4cace470d41246a69991c50d31ae1fea kostenfrei https://www.mdpi.com/1422-0067/22/12/6414 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 22 2021 12, p 6414
allfields_unstemmed	10.3390/ijms22126414 doi (DE-627)DOAJ068227671 (DE-599)DOAJ4cace470d41246a69991c50d31ae1fea DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yan Chen verfasserin aut Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previously reported in detail. To identify the <i<Nramp</i< genes in <i<S. polyrhiza</i<, we performed genome-wide identification, characterization, classification, and cis-elements analysis among 22 species with 138 amino acid sequences. We also conducted chromosomal localization and analyzed the synteny relationship, promoter, subcellular localization, and expression patterns in <i<S. polyrhiza</i<. β-Glucuronidase staining indicated that <i<SpNramp</i<<i<1</i< and <i<SpNramp3</i< mainly accumulated in the root and joint between mother and daughter frond. Moreover, <i<SpNramp1</i< was also widely displayed in the frond. <i<SpNramp2</i< was intensively distributed in the root and frond. Quantitative real-time PCR results proved that the <i<SpNramp</i< gene expression level was influenced by Cd stress, especially in response to Fe or Mn deficiency. The study provides detailed information on the <i<SpNramp</i< gene family and their distribution and expression, laying a beneficial foundation for functional research. <i<Spirodela polyrhiza</i< <i<Nramp</i< family promoter Cd Fe or Mn limiting gene expression profiling Biology (General) Chemistry Xuyao Zhao verfasserin aut Gaojie Li verfasserin aut Sunjeet Kumar verfasserin aut Zuoliang Sun verfasserin aut Yixian Li verfasserin aut Wenjun Guo verfasserin aut Jingjing Yang verfasserin aut Hongwei Hou verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 22(2021), 12, p 6414 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:22 year:2021 number:12, p 6414 https://doi.org/10.3390/ijms22126414 kostenfrei https://doaj.org/article/4cace470d41246a69991c50d31ae1fea kostenfrei https://www.mdpi.com/1422-0067/22/12/6414 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 22 2021 12, p 6414
allfieldsGer	10.3390/ijms22126414 doi (DE-627)DOAJ068227671 (DE-599)DOAJ4cace470d41246a69991c50d31ae1fea DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yan Chen verfasserin aut Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previously reported in detail. To identify the <i<Nramp</i< genes in <i<S. polyrhiza</i<, we performed genome-wide identification, characterization, classification, and cis-elements analysis among 22 species with 138 amino acid sequences. We also conducted chromosomal localization and analyzed the synteny relationship, promoter, subcellular localization, and expression patterns in <i<S. polyrhiza</i<. β-Glucuronidase staining indicated that <i<SpNramp</i<<i<1</i< and <i<SpNramp3</i< mainly accumulated in the root and joint between mother and daughter frond. Moreover, <i<SpNramp1</i< was also widely displayed in the frond. <i<SpNramp2</i< was intensively distributed in the root and frond. Quantitative real-time PCR results proved that the <i<SpNramp</i< gene expression level was influenced by Cd stress, especially in response to Fe or Mn deficiency. The study provides detailed information on the <i<SpNramp</i< gene family and their distribution and expression, laying a beneficial foundation for functional research. <i<Spirodela polyrhiza</i< <i<Nramp</i< family promoter Cd Fe or Mn limiting gene expression profiling Biology (General) Chemistry Xuyao Zhao verfasserin aut Gaojie Li verfasserin aut Sunjeet Kumar verfasserin aut Zuoliang Sun verfasserin aut Yixian Li verfasserin aut Wenjun Guo verfasserin aut Jingjing Yang verfasserin aut Hongwei Hou verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 22(2021), 12, p 6414 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:22 year:2021 number:12, p 6414 https://doi.org/10.3390/ijms22126414 kostenfrei https://doaj.org/article/4cace470d41246a69991c50d31ae1fea kostenfrei https://www.mdpi.com/1422-0067/22/12/6414 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 22 2021 12, p 6414
allfieldsSound	10.3390/ijms22126414 doi (DE-627)DOAJ068227671 (DE-599)DOAJ4cace470d41246a69991c50d31ae1fea DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yan Chen verfasserin aut Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previously reported in detail. To identify the <i<Nramp</i< genes in <i<S. polyrhiza</i<, we performed genome-wide identification, characterization, classification, and cis-elements analysis among 22 species with 138 amino acid sequences. We also conducted chromosomal localization and analyzed the synteny relationship, promoter, subcellular localization, and expression patterns in <i<S. polyrhiza</i<. β-Glucuronidase staining indicated that <i<SpNramp</i<<i<1</i< and <i<SpNramp3</i< mainly accumulated in the root and joint between mother and daughter frond. Moreover, <i<SpNramp1</i< was also widely displayed in the frond. <i<SpNramp2</i< was intensively distributed in the root and frond. Quantitative real-time PCR results proved that the <i<SpNramp</i< gene expression level was influenced by Cd stress, especially in response to Fe or Mn deficiency. The study provides detailed information on the <i<SpNramp</i< gene family and their distribution and expression, laying a beneficial foundation for functional research. <i<Spirodela polyrhiza</i< <i<Nramp</i< family promoter Cd Fe or Mn limiting gene expression profiling Biology (General) Chemistry Xuyao Zhao verfasserin aut Gaojie Li verfasserin aut Sunjeet Kumar verfasserin aut Zuoliang Sun verfasserin aut Yixian Li verfasserin aut Wenjun Guo verfasserin aut Jingjing Yang verfasserin aut Hongwei Hou verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 22(2021), 12, p 6414 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:22 year:2021 number:12, p 6414 https://doi.org/10.3390/ijms22126414 kostenfrei https://doaj.org/article/4cace470d41246a69991c50d31ae1fea kostenfrei https://www.mdpi.com/1422-0067/22/12/6414 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 22 2021 12, p 6414
language	English
source	In International Journal of Molecular Sciences 22(2021), 12, p 6414 volume:22 year:2021 number:12, p 6414
sourceStr	In International Journal of Molecular Sciences 22(2021), 12, p 6414 volume:22 year:2021 number:12, p 6414
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	<i<Spirodela polyrhiza</i< <i<Nramp</i< family promoter Cd Fe or Mn limiting gene expression profiling Biology (General) Chemistry
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container_title	International Journal of Molecular Sciences
authorswithroles_txt_mv	Yan Chen @@aut@@ Xuyao Zhao @@aut@@ Gaojie Li @@aut@@ Sunjeet Kumar @@aut@@ Zuoliang Sun @@aut@@ Yixian Li @@aut@@ Wenjun Guo @@aut@@ Jingjing Yang @@aut@@ Hongwei Hou @@aut@@
publishDateDaySort_date	2021-01-01T00:00:00Z
hierarchy_top_id	316340715
id	DOAJ068227671
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callnumber-first	Q - Science
author	Yan Chen
spellingShingle	Yan Chen misc QH301-705.5 misc QD1-999 misc <i<Spirodela polyrhiza</i< misc <i<Nramp</i< family misc promoter misc Cd misc Fe or Mn limiting misc gene expression profiling misc Biology (General) misc Chemistry Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress
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topic_title	QH301-705.5 QD1-999 Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress <i<Spirodela polyrhiza</i< <i<Nramp</i< family promoter Cd Fe or Mn limiting gene expression profiling
topic	misc QH301-705.5 misc QD1-999 misc <i<Spirodela polyrhiza</i< misc <i<Nramp</i< family misc promoter misc Cd misc Fe or Mn limiting misc gene expression profiling misc Biology (General) misc Chemistry
topic_unstemmed	misc QH301-705.5 misc QD1-999 misc <i<Spirodela polyrhiza</i< misc <i<Nramp</i< family misc promoter misc Cd misc Fe or Mn limiting misc gene expression profiling misc Biology (General) misc Chemistry
topic_browse	misc QH301-705.5 misc QD1-999 misc <i<Spirodela polyrhiza</i< misc <i<Nramp</i< family misc promoter misc Cd misc Fe or Mn limiting misc gene expression profiling misc Biology (General) misc Chemistry
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title	Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress
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title_full	Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress
author_sort	Yan Chen
journal	International Journal of Molecular Sciences
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author_browse	Yan Chen Xuyao Zhao Gaojie Li Sunjeet Kumar Zuoliang Sun Yixian Li Wenjun Guo Jingjing Yang Hongwei Hou
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author-letter	Yan Chen
doi_str_mv	10.3390/ijms22126414
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title_sort	genome-wide identification of the <i<nramp</i< gene family in <i<spirodela polyrhiza</i< and expression analysis under cadmium stress
callnumber	QH301-705.5
title_auth	Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress
abstract	Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previously reported in detail. To identify the <i<Nramp</i< genes in <i<S. polyrhiza</i<, we performed genome-wide identification, characterization, classification, and cis-elements analysis among 22 species with 138 amino acid sequences. We also conducted chromosomal localization and analyzed the synteny relationship, promoter, subcellular localization, and expression patterns in <i<S. polyrhiza</i<. β-Glucuronidase staining indicated that <i<SpNramp</i<<i<1</i< and <i<SpNramp3</i< mainly accumulated in the root and joint between mother and daughter frond. Moreover, <i<SpNramp1</i< was also widely displayed in the frond. <i<SpNramp2</i< was intensively distributed in the root and frond. Quantitative real-time PCR results proved that the <i<SpNramp</i< gene expression level was influenced by Cd stress, especially in response to Fe or Mn deficiency. The study provides detailed information on the <i<SpNramp</i< gene family and their distribution and expression, laying a beneficial foundation for functional research.
abstractGer	Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previously reported in detail. To identify the <i<Nramp</i< genes in <i<S. polyrhiza</i<, we performed genome-wide identification, characterization, classification, and cis-elements analysis among 22 species with 138 amino acid sequences. We also conducted chromosomal localization and analyzed the synteny relationship, promoter, subcellular localization, and expression patterns in <i<S. polyrhiza</i<. β-Glucuronidase staining indicated that <i<SpNramp</i<<i<1</i< and <i<SpNramp3</i< mainly accumulated in the root and joint between mother and daughter frond. Moreover, <i<SpNramp1</i< was also widely displayed in the frond. <i<SpNramp2</i< was intensively distributed in the root and frond. Quantitative real-time PCR results proved that the <i<SpNramp</i< gene expression level was influenced by Cd stress, especially in response to Fe or Mn deficiency. The study provides detailed information on the <i<SpNramp</i< gene family and their distribution and expression, laying a beneficial foundation for functional research.
abstract_unstemmed	Natural resistance-associated macrophage proteins (Nramps) are specific metal transporters in plants with different functions among various species. The evolutionary and functional information of the <i<Nramp</i< gene family in <i<Spirodela polyrhiza</i< has not been previously reported in detail. To identify the <i<Nramp</i< genes in <i<S. polyrhiza</i<, we performed genome-wide identification, characterization, classification, and cis-elements analysis among 22 species with 138 amino acid sequences. We also conducted chromosomal localization and analyzed the synteny relationship, promoter, subcellular localization, and expression patterns in <i<S. polyrhiza</i<. β-Glucuronidase staining indicated that <i<SpNramp</i<<i<1</i< and <i<SpNramp3</i< mainly accumulated in the root and joint between mother and daughter frond. Moreover, <i<SpNramp1</i< was also widely displayed in the frond. <i<SpNramp2</i< was intensively distributed in the root and frond. Quantitative real-time PCR results proved that the <i<SpNramp</i< gene expression level was influenced by Cd stress, especially in response to Fe or Mn deficiency. The study provides detailed information on the <i<SpNramp</i< gene family and their distribution and expression, laying a beneficial foundation for functional research.
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container_issue	12, p 6414
title_short	Genome-Wide Identification of the <i<Nramp</i< Gene Family in <i<Spirodela polyrhiza</i< and Expression Analysis under Cadmium Stress
url	https://doi.org/10.3390/ijms22126414 https://doaj.org/article/4cace470d41246a69991c50d31ae1fea https://www.mdpi.com/1422-0067/22/12/6414 https://doaj.org/toc/1661-6596 https://doaj.org/toc/1422-0067
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up_date	2024-07-03T16:35:05.037Z
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