DOE JGI Metagenome Workflow

The DOE JGI Metagenome Workflow is designed for processing metagenomic data sets starting from Illumina fastq files. It performs data preprocessing, error correction, assembly, structural and functional annotation, and binning.

Gespeichert in:

Autor*in:	Alicia Clum [verfasserIn] Marcel Huntemann [verfasserIn] Brian Bushnell [verfasserIn] Brian Foster [verfasserIn] Bryce Foster [verfasserIn] Simon Roux [verfasserIn] Patrick P. Hajek [verfasserIn] Neha Varghese [verfasserIn] Supratim Mukherjee [verfasserIn] T. B. K. Reddy [verfasserIn] Chris Daum [verfasserIn] Yuko Yoshinaga [verfasserIn] Ronan O’Malley [verfasserIn] Rekha Seshadri [verfasserIn] Nikos C. Kyrpides [verfasserIn] Emiley A. Eloe-Fadrosh [verfasserIn] I-Min A. Chen [verfasserIn] Alex Copeland [verfasserIn] Natalia N. Ivanova [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2021

Übergeordnetes Werk:	In: mSystems - American Society for Microbiology, 2017, 6(2021), 3
Übergeordnetes Werk:	volume:6 ; year:2021 ; number:3

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.1128/mSystems.00804-20

Katalog-ID:	DOAJ070363064

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spelling	10.1128/mSystems.00804-20 doi (DE-627)DOAJ070363064 (DE-599)DOAJ06d53c16ba8d4db29707812c62731c25 DE-627 ger DE-627 rakwb eng QR1-502 Alicia Clum verfasserin aut DOE JGI Metagenome Workflow 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The DOE JGI Metagenome Workflow is designed for processing metagenomic data sets starting from Illumina fastq files. It performs data preprocessing, error correction, assembly, structural and functional annotation, and binning. Microbiology Marcel Huntemann verfasserin aut Brian Bushnell verfasserin aut Brian Foster verfasserin aut Bryce Foster verfasserin aut Simon Roux verfasserin aut Patrick P. Hajek verfasserin aut Neha Varghese verfasserin aut Supratim Mukherjee verfasserin aut T. B. K. Reddy verfasserin aut Chris Daum verfasserin aut Yuko Yoshinaga verfasserin aut Ronan O’Malley verfasserin aut Rekha Seshadri verfasserin aut Nikos C. Kyrpides verfasserin aut Emiley A. Eloe-Fadrosh verfasserin aut I-Min A. Chen verfasserin aut Alex Copeland verfasserin aut Natalia N. Ivanova verfasserin aut In mSystems American Society for Microbiology, 2017 6(2021), 3 (DE-627)84597212X (DE-600)2844333-0 23795077 nnns volume:6 year:2021 number:3 https://doi.org/10.1128/mSystems.00804-20 kostenfrei https://doaj.org/article/06d53c16ba8d4db29707812c62731c25 kostenfrei https://journals.asm.org/doi/10.1128/mSystems.00804-20 kostenfrei https://doaj.org/toc/2379-5077 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2021 3
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allfieldsGer	10.1128/mSystems.00804-20 doi (DE-627)DOAJ070363064 (DE-599)DOAJ06d53c16ba8d4db29707812c62731c25 DE-627 ger DE-627 rakwb eng QR1-502 Alicia Clum verfasserin aut DOE JGI Metagenome Workflow 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The DOE JGI Metagenome Workflow is designed for processing metagenomic data sets starting from Illumina fastq files. It performs data preprocessing, error correction, assembly, structural and functional annotation, and binning. Microbiology Marcel Huntemann verfasserin aut Brian Bushnell verfasserin aut Brian Foster verfasserin aut Bryce Foster verfasserin aut Simon Roux verfasserin aut Patrick P. Hajek verfasserin aut Neha Varghese verfasserin aut Supratim Mukherjee verfasserin aut T. B. K. Reddy verfasserin aut Chris Daum verfasserin aut Yuko Yoshinaga verfasserin aut Ronan O’Malley verfasserin aut Rekha Seshadri verfasserin aut Nikos C. Kyrpides verfasserin aut Emiley A. Eloe-Fadrosh verfasserin aut I-Min A. Chen verfasserin aut Alex Copeland verfasserin aut Natalia N. Ivanova verfasserin aut In mSystems American Society for Microbiology, 2017 6(2021), 3 (DE-627)84597212X (DE-600)2844333-0 23795077 nnns volume:6 year:2021 number:3 https://doi.org/10.1128/mSystems.00804-20 kostenfrei https://doaj.org/article/06d53c16ba8d4db29707812c62731c25 kostenfrei https://journals.asm.org/doi/10.1128/mSystems.00804-20 kostenfrei https://doaj.org/toc/2379-5077 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2021 3
allfieldsSound	10.1128/mSystems.00804-20 doi (DE-627)DOAJ070363064 (DE-599)DOAJ06d53c16ba8d4db29707812c62731c25 DE-627 ger DE-627 rakwb eng QR1-502 Alicia Clum verfasserin aut DOE JGI Metagenome Workflow 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The DOE JGI Metagenome Workflow is designed for processing metagenomic data sets starting from Illumina fastq files. It performs data preprocessing, error correction, assembly, structural and functional annotation, and binning. Microbiology Marcel Huntemann verfasserin aut Brian Bushnell verfasserin aut Brian Foster verfasserin aut Bryce Foster verfasserin aut Simon Roux verfasserin aut Patrick P. Hajek verfasserin aut Neha Varghese verfasserin aut Supratim Mukherjee verfasserin aut T. B. K. Reddy verfasserin aut Chris Daum verfasserin aut Yuko Yoshinaga verfasserin aut Ronan O’Malley verfasserin aut Rekha Seshadri verfasserin aut Nikos C. Kyrpides verfasserin aut Emiley A. Eloe-Fadrosh verfasserin aut I-Min A. Chen verfasserin aut Alex Copeland verfasserin aut Natalia N. Ivanova verfasserin aut In mSystems American Society for Microbiology, 2017 6(2021), 3 (DE-627)84597212X (DE-600)2844333-0 23795077 nnns volume:6 year:2021 number:3 https://doi.org/10.1128/mSystems.00804-20 kostenfrei https://doaj.org/article/06d53c16ba8d4db29707812c62731c25 kostenfrei https://journals.asm.org/doi/10.1128/mSystems.00804-20 kostenfrei https://doaj.org/toc/2379-5077 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2021 3
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source	In mSystems 6(2021), 3 volume:6 year:2021 number:3
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author_browse	Alicia Clum Marcel Huntemann Brian Bushnell Brian Foster Bryce Foster Simon Roux Patrick P. Hajek Neha Varghese Supratim Mukherjee T. B. K. Reddy Chris Daum Yuko Yoshinaga Ronan O’Malley Rekha Seshadri Nikos C. Kyrpides Emiley A. Eloe-Fadrosh I-Min A. Chen Alex Copeland Natalia N. Ivanova
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abstract	The DOE JGI Metagenome Workflow is designed for processing metagenomic data sets starting from Illumina fastq files. It performs data preprocessing, error correction, assembly, structural and functional annotation, and binning.
abstractGer	The DOE JGI Metagenome Workflow is designed for processing metagenomic data sets starting from Illumina fastq files. It performs data preprocessing, error correction, assembly, structural and functional annotation, and binning.
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title_short	DOE JGI Metagenome Workflow
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up_date	2024-07-03T14:23:39.029Z
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