Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula

Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we iden...
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Autor*in:	Lei Ling [verfasserIn] Yue Qu [verfasserIn] Jintao Zhu [verfasserIn] Dan Wang [verfasserIn] Changhong Guo [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2020

Schlagwörter:	Cicer arietinum Medicago truncatula VQ gene family Gene expression Abiotic stress Bioinformatics

Übergeordnetes Werk:	In: PeerJ - PeerJ Inc., 2013, 8, p e8471(2020)
Übergeordnetes Werk:	volume:8, p e8471 ; year:2020

Links:	Link aufrufen Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.7717/peerj.8471

Katalog-ID:	DOAJ071465928

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520			\|a Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we identified 19 and 32 VQ genes in C. arietinum and M. truncatula, respectively. A total of these VQ genes were divided into eight groups (I–VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these VQ genes might have originated from a common ancestor. In silico analyses demonstrated that these VQ genes were expressed in different tissues. qRT-PCR analysis indicated that the VQ genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of VQ genes from C. arietinum and M. truncatula and provides a solid foundation for further research of the specific functions of VQ proteins.
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allfields	10.7717/peerj.8471 doi (DE-627)DOAJ071465928 (DE-599)DOAJ8212cc8a67504c078b5013602ec3d2de DE-627 ger DE-627 rakwb eng QH301-705.5 Lei Ling verfasserin aut Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we identified 19 and 32 VQ genes in C. arietinum and M. truncatula, respectively. A total of these VQ genes were divided into eight groups (I–VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these VQ genes might have originated from a common ancestor. In silico analyses demonstrated that these VQ genes were expressed in different tissues. qRT-PCR analysis indicated that the VQ genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of VQ genes from C. arietinum and M. truncatula and provides a solid foundation for further research of the specific functions of VQ proteins. Cicer arietinum Medicago truncatula VQ gene family Gene expression Abiotic stress Bioinformatics Medicine R Biology (General) Yue Qu verfasserin aut Jintao Zhu verfasserin aut Dan Wang verfasserin aut Changhong Guo verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e8471(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e8471 year:2020 https://doi.org/10.7717/peerj.8471 kostenfrei https://doaj.org/article/8212cc8a67504c078b5013602ec3d2de kostenfrei https://peerj.com/articles/8471.pdf kostenfrei https://peerj.com/articles/8471/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e8471 2020
spelling	10.7717/peerj.8471 doi (DE-627)DOAJ071465928 (DE-599)DOAJ8212cc8a67504c078b5013602ec3d2de DE-627 ger DE-627 rakwb eng QH301-705.5 Lei Ling verfasserin aut Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we identified 19 and 32 VQ genes in C. arietinum and M. truncatula, respectively. A total of these VQ genes were divided into eight groups (I–VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these VQ genes might have originated from a common ancestor. In silico analyses demonstrated that these VQ genes were expressed in different tissues. qRT-PCR analysis indicated that the VQ genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of VQ genes from C. arietinum and M. truncatula and provides a solid foundation for further research of the specific functions of VQ proteins. Cicer arietinum Medicago truncatula VQ gene family Gene expression Abiotic stress Bioinformatics Medicine R Biology (General) Yue Qu verfasserin aut Jintao Zhu verfasserin aut Dan Wang verfasserin aut Changhong Guo verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e8471(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e8471 year:2020 https://doi.org/10.7717/peerj.8471 kostenfrei https://doaj.org/article/8212cc8a67504c078b5013602ec3d2de kostenfrei https://peerj.com/articles/8471.pdf kostenfrei https://peerj.com/articles/8471/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e8471 2020
allfields_unstemmed	10.7717/peerj.8471 doi (DE-627)DOAJ071465928 (DE-599)DOAJ8212cc8a67504c078b5013602ec3d2de DE-627 ger DE-627 rakwb eng QH301-705.5 Lei Ling verfasserin aut Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we identified 19 and 32 VQ genes in C. arietinum and M. truncatula, respectively. A total of these VQ genes were divided into eight groups (I–VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these VQ genes might have originated from a common ancestor. In silico analyses demonstrated that these VQ genes were expressed in different tissues. qRT-PCR analysis indicated that the VQ genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of VQ genes from C. arietinum and M. truncatula and provides a solid foundation for further research of the specific functions of VQ proteins. Cicer arietinum Medicago truncatula VQ gene family Gene expression Abiotic stress Bioinformatics Medicine R Biology (General) Yue Qu verfasserin aut Jintao Zhu verfasserin aut Dan Wang verfasserin aut Changhong Guo verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e8471(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e8471 year:2020 https://doi.org/10.7717/peerj.8471 kostenfrei https://doaj.org/article/8212cc8a67504c078b5013602ec3d2de kostenfrei https://peerj.com/articles/8471.pdf kostenfrei https://peerj.com/articles/8471/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e8471 2020
allfieldsGer	10.7717/peerj.8471 doi (DE-627)DOAJ071465928 (DE-599)DOAJ8212cc8a67504c078b5013602ec3d2de DE-627 ger DE-627 rakwb eng QH301-705.5 Lei Ling verfasserin aut Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we identified 19 and 32 VQ genes in C. arietinum and M. truncatula, respectively. A total of these VQ genes were divided into eight groups (I–VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these VQ genes might have originated from a common ancestor. In silico analyses demonstrated that these VQ genes were expressed in different tissues. qRT-PCR analysis indicated that the VQ genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of VQ genes from C. arietinum and M. truncatula and provides a solid foundation for further research of the specific functions of VQ proteins. Cicer arietinum Medicago truncatula VQ gene family Gene expression Abiotic stress Bioinformatics Medicine R Biology (General) Yue Qu verfasserin aut Jintao Zhu verfasserin aut Dan Wang verfasserin aut Changhong Guo verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e8471(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e8471 year:2020 https://doi.org/10.7717/peerj.8471 kostenfrei https://doaj.org/article/8212cc8a67504c078b5013602ec3d2de kostenfrei https://peerj.com/articles/8471.pdf kostenfrei https://peerj.com/articles/8471/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e8471 2020
allfieldsSound	10.7717/peerj.8471 doi (DE-627)DOAJ071465928 (DE-599)DOAJ8212cc8a67504c078b5013602ec3d2de DE-627 ger DE-627 rakwb eng QH301-705.5 Lei Ling verfasserin aut Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we identified 19 and 32 VQ genes in C. arietinum and M. truncatula, respectively. A total of these VQ genes were divided into eight groups (I–VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these VQ genes might have originated from a common ancestor. In silico analyses demonstrated that these VQ genes were expressed in different tissues. qRT-PCR analysis indicated that the VQ genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of VQ genes from C. arietinum and M. truncatula and provides a solid foundation for further research of the specific functions of VQ proteins. Cicer arietinum Medicago truncatula VQ gene family Gene expression Abiotic stress Bioinformatics Medicine R Biology (General) Yue Qu verfasserin aut Jintao Zhu verfasserin aut Dan Wang verfasserin aut Changhong Guo verfasserin aut In PeerJ PeerJ Inc., 2013 8, p e8471(2020) (DE-627)736558624 (DE-600)2703241-3 21678359 nnns volume:8, p e8471 year:2020 https://doi.org/10.7717/peerj.8471 kostenfrei https://doaj.org/article/8212cc8a67504c078b5013602ec3d2de kostenfrei https://peerj.com/articles/8471.pdf kostenfrei https://peerj.com/articles/8471/ kostenfrei https://doaj.org/toc/2167-8359 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8, p e8471 2020
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callnumber-first	Q - Science
author	Lei Ling
spellingShingle	Lei Ling misc QH301-705.5 misc Cicer arietinum misc Medicago truncatula misc VQ gene family misc Gene expression misc Abiotic stress misc Bioinformatics misc Medicine misc R misc Biology (General) Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula
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topic_title	QH301-705.5 Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula Cicer arietinum Medicago truncatula VQ gene family Gene expression Abiotic stress Bioinformatics
topic	misc QH301-705.5 misc Cicer arietinum misc Medicago truncatula misc VQ gene family misc Gene expression misc Abiotic stress misc Bioinformatics misc Medicine misc R misc Biology (General)
topic_unstemmed	misc QH301-705.5 misc Cicer arietinum misc Medicago truncatula misc VQ gene family misc Gene expression misc Abiotic stress misc Bioinformatics misc Medicine misc R misc Biology (General)
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title	Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula
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title_full	Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula
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title_sort	genome-wide identification and expression analysis of the vq gene family in cicer arietinum and medicago truncatula
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title_auth	Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula
abstract	Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we identified 19 and 32 VQ genes in C. arietinum and M. truncatula, respectively. A total of these VQ genes were divided into eight groups (I–VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these VQ genes might have originated from a common ancestor. In silico analyses demonstrated that these VQ genes were expressed in different tissues. qRT-PCR analysis indicated that the VQ genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of VQ genes from C. arietinum and M. truncatula and provides a solid foundation for further research of the specific functions of VQ proteins.
abstractGer	Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we identified 19 and 32 VQ genes in C. arietinum and M. truncatula, respectively. A total of these VQ genes were divided into eight groups (I–VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these VQ genes might have originated from a common ancestor. In silico analyses demonstrated that these VQ genes were expressed in different tissues. qRT-PCR analysis indicated that the VQ genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of VQ genes from C. arietinum and M. truncatula and provides a solid foundation for further research of the specific functions of VQ proteins.
abstract_unstemmed	Valine-glutamine (VQ) proteins are plant-specific proteins that play crucial roles in plant development as well as biotic and abiotic stress responses. VQ genes have been identified in various plants; however, there are no systematic reports in Cicer arietinum or Medicago truncatula. Herein, we identified 19 and 32 VQ genes in C. arietinum and M. truncatula, respectively. A total of these VQ genes were divided into eight groups (I–VIII) based on phylogenetic analysis. Gene structure analyses and motif patterns revealed that these VQ genes might have originated from a common ancestor. In silico analyses demonstrated that these VQ genes were expressed in different tissues. qRT-PCR analysis indicated that the VQ genes were differentially regulated during multiple abiotic stresses. This report presents the first systematic analysis of VQ genes from C. arietinum and M. truncatula and provides a solid foundation for further research of the specific functions of VQ proteins.
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title_short	Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula
url	https://doi.org/10.7717/peerj.8471 https://doaj.org/article/8212cc8a67504c078b5013602ec3d2de https://peerj.com/articles/8471.pdf https://peerj.com/articles/8471/ https://doaj.org/toc/2167-8359
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Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula

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