A Genome-wide Scan for Selective Sweeps in Racing Horses

Using next-generation sequencing, we conducted a genome-wide scan of selective sweeps associated with selection toward genetic improvement in Thoroughbreds. We investigated potential phenotypic consequence of putative candidate loci by candidate gene association mapping for the finishing time in 240...
Ausführliche Beschreibung

Gespeichert in:

Autor*in:	Sunjin Moon [verfasserIn] Jin Woo Lee [verfasserIn] Donghyun Shin [verfasserIn] Kwang-Yun Shin [verfasserIn] Jun Kim [verfasserIn] Ik-Young Choi [verfasserIn] Jaemin Kim [verfasserIn] Heebal Kim [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2015

Schlagwörter:	Single Nucleotide Polymorphism Racehorse Selective Sweep Quantitative Trait Loci

Übergeordnetes Werk:	In: Asian-Australasian Journal of Animal Sciences - Asian-Australasian Association of Animal Production Societies, 2017, 28(2015), 11, Seite 1525-1531
Übergeordnetes Werk:	volume:28 ; year:2015 ; number:11 ; pages:1525-1531

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc Journal toc

DOI / URN:	10.5713/ajas.14.0696

Katalog-ID:	DOAJ071738088

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650		4	\|a Single Nucleotide Polymorphism
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650		4	\|a Quantitative Trait Loci
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allfields	10.5713/ajas.14.0696 doi (DE-627)DOAJ071738088 (DE-599)DOAJc7d301a2554e44e58b04e6152cabac02 DE-627 ger DE-627 rakwb eng SF1-1100 QP501-801 Sunjin Moon verfasserin aut A Genome-wide Scan for Selective Sweeps in Racing Horses 2015 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Using next-generation sequencing, we conducted a genome-wide scan of selective sweeps associated with selection toward genetic improvement in Thoroughbreds. We investigated potential phenotypic consequence of putative candidate loci by candidate gene association mapping for the finishing time in 240 Thoroughbred horses. We found a significant association with the trait for Ral GApase alpha 2 (RALGAP2) that regulates a variety of cellular processes of signal trafficking. Neighboring genes around RALGAP2 included insulinoma-associated 1 (INSM1), pallid (PLDN), and Ras and Rab interactor 2 (RIN2) genes have similar roles in signal trafficking, suggesting that a co-evolving gene cluster located on the chromosome 22 is under strong artificial selection in racehorses. Single Nucleotide Polymorphism Racehorse Selective Sweep Quantitative Trait Loci Animal culture Animal biochemistry Jin Woo Lee verfasserin aut Donghyun Shin verfasserin aut Kwang-Yun Shin verfasserin aut Jun Kim verfasserin aut Ik-Young Choi verfasserin aut Jaemin Kim verfasserin aut Heebal Kim verfasserin aut In Asian-Australasian Journal of Animal Sciences Asian-Australasian Association of Animal Production Societies, 2017 28(2015), 11, Seite 1525-1531 (DE-627)756825873 (DE-600)2727534-6 19765517 nnns volume:28 year:2015 number:11 pages:1525-1531 https://doi.org/10.5713/ajas.14.0696 kostenfrei https://doaj.org/article/c7d301a2554e44e58b04e6152cabac02 kostenfrei http://www.ajas.info/upload/pdf/ajas-28-11-1525.pdf kostenfrei https://doaj.org/toc/1011-2367 Journal toc kostenfrei https://doaj.org/toc/1976-5517 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_252 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 28 2015 11 1525-1531
spelling	10.5713/ajas.14.0696 doi (DE-627)DOAJ071738088 (DE-599)DOAJc7d301a2554e44e58b04e6152cabac02 DE-627 ger DE-627 rakwb eng SF1-1100 QP501-801 Sunjin Moon verfasserin aut A Genome-wide Scan for Selective Sweeps in Racing Horses 2015 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Using next-generation sequencing, we conducted a genome-wide scan of selective sweeps associated with selection toward genetic improvement in Thoroughbreds. We investigated potential phenotypic consequence of putative candidate loci by candidate gene association mapping for the finishing time in 240 Thoroughbred horses. We found a significant association with the trait for Ral GApase alpha 2 (RALGAP2) that regulates a variety of cellular processes of signal trafficking. Neighboring genes around RALGAP2 included insulinoma-associated 1 (INSM1), pallid (PLDN), and Ras and Rab interactor 2 (RIN2) genes have similar roles in signal trafficking, suggesting that a co-evolving gene cluster located on the chromosome 22 is under strong artificial selection in racehorses. Single Nucleotide Polymorphism Racehorse Selective Sweep Quantitative Trait Loci Animal culture Animal biochemistry Jin Woo Lee verfasserin aut Donghyun Shin verfasserin aut Kwang-Yun Shin verfasserin aut Jun Kim verfasserin aut Ik-Young Choi verfasserin aut Jaemin Kim verfasserin aut Heebal Kim verfasserin aut In Asian-Australasian Journal of Animal Sciences Asian-Australasian Association of Animal Production Societies, 2017 28(2015), 11, Seite 1525-1531 (DE-627)756825873 (DE-600)2727534-6 19765517 nnns volume:28 year:2015 number:11 pages:1525-1531 https://doi.org/10.5713/ajas.14.0696 kostenfrei https://doaj.org/article/c7d301a2554e44e58b04e6152cabac02 kostenfrei http://www.ajas.info/upload/pdf/ajas-28-11-1525.pdf kostenfrei https://doaj.org/toc/1011-2367 Journal toc kostenfrei https://doaj.org/toc/1976-5517 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_252 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 28 2015 11 1525-1531
allfields_unstemmed	10.5713/ajas.14.0696 doi (DE-627)DOAJ071738088 (DE-599)DOAJc7d301a2554e44e58b04e6152cabac02 DE-627 ger DE-627 rakwb eng SF1-1100 QP501-801 Sunjin Moon verfasserin aut A Genome-wide Scan for Selective Sweeps in Racing Horses 2015 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Using next-generation sequencing, we conducted a genome-wide scan of selective sweeps associated with selection toward genetic improvement in Thoroughbreds. We investigated potential phenotypic consequence of putative candidate loci by candidate gene association mapping for the finishing time in 240 Thoroughbred horses. We found a significant association with the trait for Ral GApase alpha 2 (RALGAP2) that regulates a variety of cellular processes of signal trafficking. Neighboring genes around RALGAP2 included insulinoma-associated 1 (INSM1), pallid (PLDN), and Ras and Rab interactor 2 (RIN2) genes have similar roles in signal trafficking, suggesting that a co-evolving gene cluster located on the chromosome 22 is under strong artificial selection in racehorses. Single Nucleotide Polymorphism Racehorse Selective Sweep Quantitative Trait Loci Animal culture Animal biochemistry Jin Woo Lee verfasserin aut Donghyun Shin verfasserin aut Kwang-Yun Shin verfasserin aut Jun Kim verfasserin aut Ik-Young Choi verfasserin aut Jaemin Kim verfasserin aut Heebal Kim verfasserin aut In Asian-Australasian Journal of Animal Sciences Asian-Australasian Association of Animal Production Societies, 2017 28(2015), 11, Seite 1525-1531 (DE-627)756825873 (DE-600)2727534-6 19765517 nnns volume:28 year:2015 number:11 pages:1525-1531 https://doi.org/10.5713/ajas.14.0696 kostenfrei https://doaj.org/article/c7d301a2554e44e58b04e6152cabac02 kostenfrei http://www.ajas.info/upload/pdf/ajas-28-11-1525.pdf kostenfrei https://doaj.org/toc/1011-2367 Journal toc kostenfrei https://doaj.org/toc/1976-5517 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_252 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 28 2015 11 1525-1531
allfieldsGer	10.5713/ajas.14.0696 doi (DE-627)DOAJ071738088 (DE-599)DOAJc7d301a2554e44e58b04e6152cabac02 DE-627 ger DE-627 rakwb eng SF1-1100 QP501-801 Sunjin Moon verfasserin aut A Genome-wide Scan for Selective Sweeps in Racing Horses 2015 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Using next-generation sequencing, we conducted a genome-wide scan of selective sweeps associated with selection toward genetic improvement in Thoroughbreds. We investigated potential phenotypic consequence of putative candidate loci by candidate gene association mapping for the finishing time in 240 Thoroughbred horses. We found a significant association with the trait for Ral GApase alpha 2 (RALGAP2) that regulates a variety of cellular processes of signal trafficking. Neighboring genes around RALGAP2 included insulinoma-associated 1 (INSM1), pallid (PLDN), and Ras and Rab interactor 2 (RIN2) genes have similar roles in signal trafficking, suggesting that a co-evolving gene cluster located on the chromosome 22 is under strong artificial selection in racehorses. Single Nucleotide Polymorphism Racehorse Selective Sweep Quantitative Trait Loci Animal culture Animal biochemistry Jin Woo Lee verfasserin aut Donghyun Shin verfasserin aut Kwang-Yun Shin verfasserin aut Jun Kim verfasserin aut Ik-Young Choi verfasserin aut Jaemin Kim verfasserin aut Heebal Kim verfasserin aut In Asian-Australasian Journal of Animal Sciences Asian-Australasian Association of Animal Production Societies, 2017 28(2015), 11, Seite 1525-1531 (DE-627)756825873 (DE-600)2727534-6 19765517 nnns volume:28 year:2015 number:11 pages:1525-1531 https://doi.org/10.5713/ajas.14.0696 kostenfrei https://doaj.org/article/c7d301a2554e44e58b04e6152cabac02 kostenfrei http://www.ajas.info/upload/pdf/ajas-28-11-1525.pdf kostenfrei https://doaj.org/toc/1011-2367 Journal toc kostenfrei https://doaj.org/toc/1976-5517 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_252 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 28 2015 11 1525-1531
allfieldsSound	10.5713/ajas.14.0696 doi (DE-627)DOAJ071738088 (DE-599)DOAJc7d301a2554e44e58b04e6152cabac02 DE-627 ger DE-627 rakwb eng SF1-1100 QP501-801 Sunjin Moon verfasserin aut A Genome-wide Scan for Selective Sweeps in Racing Horses 2015 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Using next-generation sequencing, we conducted a genome-wide scan of selective sweeps associated with selection toward genetic improvement in Thoroughbreds. We investigated potential phenotypic consequence of putative candidate loci by candidate gene association mapping for the finishing time in 240 Thoroughbred horses. We found a significant association with the trait for Ral GApase alpha 2 (RALGAP2) that regulates a variety of cellular processes of signal trafficking. Neighboring genes around RALGAP2 included insulinoma-associated 1 (INSM1), pallid (PLDN), and Ras and Rab interactor 2 (RIN2) genes have similar roles in signal trafficking, suggesting that a co-evolving gene cluster located on the chromosome 22 is under strong artificial selection in racehorses. Single Nucleotide Polymorphism Racehorse Selective Sweep Quantitative Trait Loci Animal culture Animal biochemistry Jin Woo Lee verfasserin aut Donghyun Shin verfasserin aut Kwang-Yun Shin verfasserin aut Jun Kim verfasserin aut Ik-Young Choi verfasserin aut Jaemin Kim verfasserin aut Heebal Kim verfasserin aut In Asian-Australasian Journal of Animal Sciences Asian-Australasian Association of Animal Production Societies, 2017 28(2015), 11, Seite 1525-1531 (DE-627)756825873 (DE-600)2727534-6 19765517 nnns volume:28 year:2015 number:11 pages:1525-1531 https://doi.org/10.5713/ajas.14.0696 kostenfrei https://doaj.org/article/c7d301a2554e44e58b04e6152cabac02 kostenfrei http://www.ajas.info/upload/pdf/ajas-28-11-1525.pdf kostenfrei https://doaj.org/toc/1011-2367 Journal toc kostenfrei https://doaj.org/toc/1976-5517 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_252 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 28 2015 11 1525-1531
language	English
source	In Asian-Australasian Journal of Animal Sciences 28(2015), 11, Seite 1525-1531 volume:28 year:2015 number:11 pages:1525-1531
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topic_facet	Single Nucleotide Polymorphism Racehorse Selective Sweep Quantitative Trait Loci Animal culture Animal biochemistry
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container_title	Asian-Australasian Journal of Animal Sciences
authorswithroles_txt_mv	Sunjin Moon @@aut@@ Jin Woo Lee @@aut@@ Donghyun Shin @@aut@@ Kwang-Yun Shin @@aut@@ Jun Kim @@aut@@ Ik-Young Choi @@aut@@ Jaemin Kim @@aut@@ Heebal Kim @@aut@@
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callnumber-first	S - Agriculture
author	Sunjin Moon
spellingShingle	Sunjin Moon misc SF1-1100 misc QP501-801 misc Single Nucleotide Polymorphism misc Racehorse misc Selective Sweep misc Quantitative Trait Loci misc Animal culture misc Animal biochemistry A Genome-wide Scan for Selective Sweeps in Racing Horses
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topic_title	SF1-1100 QP501-801 A Genome-wide Scan for Selective Sweeps in Racing Horses Single Nucleotide Polymorphism Racehorse Selective Sweep Quantitative Trait Loci
topic	misc SF1-1100 misc QP501-801 misc Single Nucleotide Polymorphism misc Racehorse misc Selective Sweep misc Quantitative Trait Loci misc Animal culture misc Animal biochemistry
topic_unstemmed	misc SF1-1100 misc QP501-801 misc Single Nucleotide Polymorphism misc Racehorse misc Selective Sweep misc Quantitative Trait Loci misc Animal culture misc Animal biochemistry
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title	A Genome-wide Scan for Selective Sweeps in Racing Horses
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title_full	A Genome-wide Scan for Selective Sweeps in Racing Horses
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title_sort	genome-wide scan for selective sweeps in racing horses
callnumber	SF1-1100
title_auth	A Genome-wide Scan for Selective Sweeps in Racing Horses
abstract	Using next-generation sequencing, we conducted a genome-wide scan of selective sweeps associated with selection toward genetic improvement in Thoroughbreds. We investigated potential phenotypic consequence of putative candidate loci by candidate gene association mapping for the finishing time in 240 Thoroughbred horses. We found a significant association with the trait for Ral GApase alpha 2 (RALGAP2) that regulates a variety of cellular processes of signal trafficking. Neighboring genes around RALGAP2 included insulinoma-associated 1 (INSM1), pallid (PLDN), and Ras and Rab interactor 2 (RIN2) genes have similar roles in signal trafficking, suggesting that a co-evolving gene cluster located on the chromosome 22 is under strong artificial selection in racehorses.
abstractGer	Using next-generation sequencing, we conducted a genome-wide scan of selective sweeps associated with selection toward genetic improvement in Thoroughbreds. We investigated potential phenotypic consequence of putative candidate loci by candidate gene association mapping for the finishing time in 240 Thoroughbred horses. We found a significant association with the trait for Ral GApase alpha 2 (RALGAP2) that regulates a variety of cellular processes of signal trafficking. Neighboring genes around RALGAP2 included insulinoma-associated 1 (INSM1), pallid (PLDN), and Ras and Rab interactor 2 (RIN2) genes have similar roles in signal trafficking, suggesting that a co-evolving gene cluster located on the chromosome 22 is under strong artificial selection in racehorses.
abstract_unstemmed	Using next-generation sequencing, we conducted a genome-wide scan of selective sweeps associated with selection toward genetic improvement in Thoroughbreds. We investigated potential phenotypic consequence of putative candidate loci by candidate gene association mapping for the finishing time in 240 Thoroughbred horses. We found a significant association with the trait for Ral GApase alpha 2 (RALGAP2) that regulates a variety of cellular processes of signal trafficking. Neighboring genes around RALGAP2 included insulinoma-associated 1 (INSM1), pallid (PLDN), and Ras and Rab interactor 2 (RIN2) genes have similar roles in signal trafficking, suggesting that a co-evolving gene cluster located on the chromosome 22 is under strong artificial selection in racehorses.
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title_short	A Genome-wide Scan for Selective Sweeps in Racing Horses
url	https://doi.org/10.5713/ajas.14.0696 https://doaj.org/article/c7d301a2554e44e58b04e6152cabac02 http://www.ajas.info/upload/pdf/ajas-28-11-1525.pdf https://doaj.org/toc/1011-2367 https://doaj.org/toc/1976-5517
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up_date	2024-07-03T21:55:51.120Z
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