Genome wide analysis of stress responsive WRKY transcription factors in Arabidopsis thaliana

WRKY transcription factors are a class of DNA-binding proteins that bind with a specific sequence C/TTGACT/C known as W-Box found in promoters of genes which are regulated by these WRKYs. From previous studies, 43 different stress responsive WRKY transcription factors in Arabidopsis thaliana, identi...
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Autor*in:	Shaiq Sultan [verfasserIn] Muhammad Amjid Ali [verfasserIn] Rana Muhammad Atif [verfasserIn] Farrukh Azeem [verfasserIn] Habibullah Nadeem [verfasserIn] M. Hussnain Siddique [verfasserIn] Ertuğrul Filiz [verfasserIn] Khadim Hussain [verfasserIn] Amjad Abbas [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch ; Türkisch

Erschienen:	2016

Schlagwörter:	WRKY, Arabidopsis thaliana, stress, W-Box, phylogenetic analysis, transcription factor

Übergeordnetes Werk:	In: Turkish Journal of Agriculture: Food Science and Technology - Turkish Science and Technology Publishing (TURSTEP), 2013, 4(2016), 4, Seite 279-290
Übergeordnetes Werk:	volume:4 ; year:2016 ; number:4 ; pages:279-290

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.24925/turjaf.v4i4.279-290.580

Katalog-ID:	DOAJ072453451

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callnumber-first	S - Agriculture
author	Shaiq Sultan
spellingShingle	Shaiq Sultan misc S1-972 misc WRKY, Arabidopsis thaliana, stress, W-Box, phylogenetic analysis, transcription factor misc Agriculture misc S misc Agriculture (General) Genome wide analysis of stress responsive WRKY transcription factors in Arabidopsis thaliana
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topic_title	S1-972 Genome wide analysis of stress responsive WRKY transcription factors in Arabidopsis thaliana WRKY, Arabidopsis thaliana, stress, W-Box, phylogenetic analysis, transcription factor
topic	misc S1-972 misc WRKY, Arabidopsis thaliana, stress, W-Box, phylogenetic analysis, transcription factor misc Agriculture misc S misc Agriculture (General)
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title	Genome wide analysis of stress responsive WRKY transcription factors in Arabidopsis thaliana
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title_full	Genome wide analysis of stress responsive WRKY transcription factors in Arabidopsis thaliana
author_sort	Shaiq Sultan
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author_browse	Shaiq Sultan Muhammad Amjid Ali Rana Muhammad Atif Farrukh Azeem Habibullah Nadeem M. Hussnain Siddique Ertuğrul Filiz Khadim Hussain Amjad Abbas
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title_sort	genome wide analysis of stress responsive wrky transcription factors in arabidopsis thaliana
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title_auth	Genome wide analysis of stress responsive WRKY transcription factors in Arabidopsis thaliana
abstract	WRKY transcription factors are a class of DNA-binding proteins that bind with a specific sequence C/TTGACT/C known as W-Box found in promoters of genes which are regulated by these WRKYs. From previous studies, 43 different stress responsive WRKY transcription factors in Arabidopsis thaliana, identified and then categorized in three groups viz., abiotic, biotic and both of these stresses. A comprehensive genome wide analysis including chromosomal localization, gene structure analysis, multiple sequence alignment, phylogenetic analysis and promoter analysis of these WRKY genes was carried out in this study to determine the functional homology in Arabidopsis. This analysis led to the classification of these WRKY family members into 3 major groups and subgroups and showed evolutionary relationship among these groups on the base of their functional WRKY domain, chromosomal localization and intron/exon structure. The proposed groups of these stress responsive WRKY genes and annotation based on their position on chromosomes can also be explored to determine their functional homology in other plant species in relation to different stresses. The result of the present study provides indispensable genomic information for the stress responsive WRKY transcription factors in Arabidopsis and will pave the way to explain the precise role of various AtWRKYs in plant growth and development under stressed conditions.
abstractGer	WRKY transcription factors are a class of DNA-binding proteins that bind with a specific sequence C/TTGACT/C known as W-Box found in promoters of genes which are regulated by these WRKYs. From previous studies, 43 different stress responsive WRKY transcription factors in Arabidopsis thaliana, identified and then categorized in three groups viz., abiotic, biotic and both of these stresses. A comprehensive genome wide analysis including chromosomal localization, gene structure analysis, multiple sequence alignment, phylogenetic analysis and promoter analysis of these WRKY genes was carried out in this study to determine the functional homology in Arabidopsis. This analysis led to the classification of these WRKY family members into 3 major groups and subgroups and showed evolutionary relationship among these groups on the base of their functional WRKY domain, chromosomal localization and intron/exon structure. The proposed groups of these stress responsive WRKY genes and annotation based on their position on chromosomes can also be explored to determine their functional homology in other plant species in relation to different stresses. The result of the present study provides indispensable genomic information for the stress responsive WRKY transcription factors in Arabidopsis and will pave the way to explain the precise role of various AtWRKYs in plant growth and development under stressed conditions.
abstract_unstemmed	WRKY transcription factors are a class of DNA-binding proteins that bind with a specific sequence C/TTGACT/C known as W-Box found in promoters of genes which are regulated by these WRKYs. From previous studies, 43 different stress responsive WRKY transcription factors in Arabidopsis thaliana, identified and then categorized in three groups viz., abiotic, biotic and both of these stresses. A comprehensive genome wide analysis including chromosomal localization, gene structure analysis, multiple sequence alignment, phylogenetic analysis and promoter analysis of these WRKY genes was carried out in this study to determine the functional homology in Arabidopsis. This analysis led to the classification of these WRKY family members into 3 major groups and subgroups and showed evolutionary relationship among these groups on the base of their functional WRKY domain, chromosomal localization and intron/exon structure. The proposed groups of these stress responsive WRKY genes and annotation based on their position on chromosomes can also be explored to determine their functional homology in other plant species in relation to different stresses. The result of the present study provides indispensable genomic information for the stress responsive WRKY transcription factors in Arabidopsis and will pave the way to explain the precise role of various AtWRKYs in plant growth and development under stressed conditions.
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title_short	Genome wide analysis of stress responsive WRKY transcription factors in Arabidopsis thaliana
url	https://doi.org/10.24925/turjaf.v4i4.279-290.580 https://doaj.org/article/186969ec7855413289a2ff7b66112b27 http://www.agrifoodscience.com/index.php/TURJAF/article/view/580 https://doaj.org/toc/2148-127X
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