Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the d...
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Autor*in:	Pajau Vangay [verfasserIn] Josephine Burgin [verfasserIn] Anjanette Johnston [verfasserIn] Kristen L. Beck [verfasserIn] Daniel C. Berrios [verfasserIn] Kai Blumberg [verfasserIn] Shane Canon [verfasserIn] Patrick Chain [verfasserIn] John-Marc Chandonia [verfasserIn] Danielle Christianson [verfasserIn] Sylvain V. Costes [verfasserIn] Joan Damerow [verfasserIn] William D. Duncan [verfasserIn] Jose Pablo Dundore-Arias [verfasserIn] Kjiersten Fagnan [verfasserIn] Jonathan M. Galazka [verfasserIn] Sean M. Gibbons [verfasserIn] David Hays [verfasserIn] Judson Hervey [verfasserIn] Bin Hu [verfasserIn] Bonnie L. Hurwitz [verfasserIn] Pankaj Jaiswal [verfasserIn] Marcin P. Joachimiak [verfasserIn] Linda Kinkel [verfasserIn] Joshua Ladau [verfasserIn] Stanton L. Martin [verfasserIn] Lee Ann McCue [verfasserIn] Kayd Miller [verfasserIn] Nigel Mouncey [verfasserIn] Chris Mungall [verfasserIn] Evangelos Pafilis [verfasserIn] T. B. K. Reddy [verfasserIn] Lorna Richardson [verfasserIn] Simon Roux [verfasserIn] Lynn M. Schriml [verfasserIn] Justin P. Shaffer [verfasserIn] Jagadish Chandrabose Sundaramurthi [verfasserIn] Luke R. Thompson [verfasserIn] Ruth E. Timme [verfasserIn] Jie Zheng [verfasserIn] Elisha M. Wood-Charlson [verfasserIn] Emiley A. Eloe-Fadrosh [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2021

Schlagwörter:	data standards metadata microbiome ontology

Übergeordnetes Werk:	In: mSystems - American Society for Microbiology, 2017, 6(2021), 1
Übergeordnetes Werk:	volume:6 ; year:2021 ; number:1

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.1128/mSystems.01194-20

Katalog-ID:	DOAJ075437732

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spelling	10.1128/mSystems.01194-20 doi (DE-627)DOAJ075437732 (DE-599)DOAJ70ee1fcbc18e476ebb6a193f72670ad9 DE-627 ger DE-627 rakwb eng QR1-502 Pajau Vangay verfasserin aut Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop. data standards metadata microbiome ontology Microbiology Josephine Burgin verfasserin aut Anjanette Johnston verfasserin aut Kristen L. Beck verfasserin aut Daniel C. Berrios verfasserin aut Kai Blumberg verfasserin aut Shane Canon verfasserin aut Patrick Chain verfasserin aut John-Marc Chandonia verfasserin aut Danielle Christianson verfasserin aut Sylvain V. Costes verfasserin aut Joan Damerow verfasserin aut William D. Duncan verfasserin aut Jose Pablo Dundore-Arias verfasserin aut Kjiersten Fagnan verfasserin aut Jonathan M. Galazka verfasserin aut Sean M. Gibbons verfasserin aut David Hays verfasserin aut Judson Hervey verfasserin aut Bin Hu verfasserin aut Bonnie L. Hurwitz verfasserin aut Pankaj Jaiswal verfasserin aut Marcin P. Joachimiak verfasserin aut Linda Kinkel verfasserin aut Joshua Ladau verfasserin aut Stanton L. Martin verfasserin aut Lee Ann McCue verfasserin aut Kayd Miller verfasserin aut Nigel Mouncey verfasserin aut Chris Mungall verfasserin aut Evangelos Pafilis verfasserin aut T. B. K. Reddy verfasserin aut Lorna Richardson verfasserin aut Simon Roux verfasserin aut Lynn M. Schriml verfasserin aut Justin P. Shaffer verfasserin aut Jagadish Chandrabose Sundaramurthi verfasserin aut Luke R. Thompson verfasserin aut Ruth E. Timme verfasserin aut Jie Zheng verfasserin aut Elisha M. Wood-Charlson verfasserin aut Emiley A. Eloe-Fadrosh verfasserin aut In mSystems American Society for Microbiology, 2017 6(2021), 1 (DE-627)84597212X (DE-600)2844333-0 23795077 nnns volume:6 year:2021 number:1 https://doi.org/10.1128/mSystems.01194-20 kostenfrei https://doaj.org/article/70ee1fcbc18e476ebb6a193f72670ad9 kostenfrei https://journals.asm.org/doi/10.1128/mSystems.01194-20 kostenfrei https://doaj.org/toc/2379-5077 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2021 1
allfields_unstemmed	10.1128/mSystems.01194-20 doi (DE-627)DOAJ075437732 (DE-599)DOAJ70ee1fcbc18e476ebb6a193f72670ad9 DE-627 ger DE-627 rakwb eng QR1-502 Pajau Vangay verfasserin aut Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop. data standards metadata microbiome ontology Microbiology Josephine Burgin verfasserin aut Anjanette Johnston verfasserin aut Kristen L. Beck verfasserin aut Daniel C. Berrios verfasserin aut Kai Blumberg verfasserin aut Shane Canon verfasserin aut Patrick Chain verfasserin aut John-Marc Chandonia verfasserin aut Danielle Christianson verfasserin aut Sylvain V. Costes verfasserin aut Joan Damerow verfasserin aut William D. Duncan verfasserin aut Jose Pablo Dundore-Arias verfasserin aut Kjiersten Fagnan verfasserin aut Jonathan M. Galazka verfasserin aut Sean M. Gibbons verfasserin aut David Hays verfasserin aut Judson Hervey verfasserin aut Bin Hu verfasserin aut Bonnie L. Hurwitz verfasserin aut Pankaj Jaiswal verfasserin aut Marcin P. Joachimiak verfasserin aut Linda Kinkel verfasserin aut Joshua Ladau verfasserin aut Stanton L. Martin verfasserin aut Lee Ann McCue verfasserin aut Kayd Miller verfasserin aut Nigel Mouncey verfasserin aut Chris Mungall verfasserin aut Evangelos Pafilis verfasserin aut T. B. K. Reddy verfasserin aut Lorna Richardson verfasserin aut Simon Roux verfasserin aut Lynn M. Schriml verfasserin aut Justin P. Shaffer verfasserin aut Jagadish Chandrabose Sundaramurthi verfasserin aut Luke R. Thompson verfasserin aut Ruth E. Timme verfasserin aut Jie Zheng verfasserin aut Elisha M. Wood-Charlson verfasserin aut Emiley A. Eloe-Fadrosh verfasserin aut In mSystems American Society for Microbiology, 2017 6(2021), 1 (DE-627)84597212X (DE-600)2844333-0 23795077 nnns volume:6 year:2021 number:1 https://doi.org/10.1128/mSystems.01194-20 kostenfrei https://doaj.org/article/70ee1fcbc18e476ebb6a193f72670ad9 kostenfrei https://journals.asm.org/doi/10.1128/mSystems.01194-20 kostenfrei https://doaj.org/toc/2379-5077 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2021 1
allfieldsGer	10.1128/mSystems.01194-20 doi (DE-627)DOAJ075437732 (DE-599)DOAJ70ee1fcbc18e476ebb6a193f72670ad9 DE-627 ger DE-627 rakwb eng QR1-502 Pajau Vangay verfasserin aut Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop. data standards metadata microbiome ontology Microbiology Josephine Burgin verfasserin aut Anjanette Johnston verfasserin aut Kristen L. Beck verfasserin aut Daniel C. Berrios verfasserin aut Kai Blumberg verfasserin aut Shane Canon verfasserin aut Patrick Chain verfasserin aut John-Marc Chandonia verfasserin aut Danielle Christianson verfasserin aut Sylvain V. Costes verfasserin aut Joan Damerow verfasserin aut William D. Duncan verfasserin aut Jose Pablo Dundore-Arias verfasserin aut Kjiersten Fagnan verfasserin aut Jonathan M. Galazka verfasserin aut Sean M. Gibbons verfasserin aut David Hays verfasserin aut Judson Hervey verfasserin aut Bin Hu verfasserin aut Bonnie L. Hurwitz verfasserin aut Pankaj Jaiswal verfasserin aut Marcin P. Joachimiak verfasserin aut Linda Kinkel verfasserin aut Joshua Ladau verfasserin aut Stanton L. Martin verfasserin aut Lee Ann McCue verfasserin aut Kayd Miller verfasserin aut Nigel Mouncey verfasserin aut Chris Mungall verfasserin aut Evangelos Pafilis verfasserin aut T. B. K. Reddy verfasserin aut Lorna Richardson verfasserin aut Simon Roux verfasserin aut Lynn M. Schriml verfasserin aut Justin P. Shaffer verfasserin aut Jagadish Chandrabose Sundaramurthi verfasserin aut Luke R. Thompson verfasserin aut Ruth E. Timme verfasserin aut Jie Zheng verfasserin aut Elisha M. Wood-Charlson verfasserin aut Emiley A. Eloe-Fadrosh verfasserin aut In mSystems American Society for Microbiology, 2017 6(2021), 1 (DE-627)84597212X (DE-600)2844333-0 23795077 nnns volume:6 year:2021 number:1 https://doi.org/10.1128/mSystems.01194-20 kostenfrei https://doaj.org/article/70ee1fcbc18e476ebb6a193f72670ad9 kostenfrei https://journals.asm.org/doi/10.1128/mSystems.01194-20 kostenfrei https://doaj.org/toc/2379-5077 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2021 1
allfieldsSound	10.1128/mSystems.01194-20 doi (DE-627)DOAJ075437732 (DE-599)DOAJ70ee1fcbc18e476ebb6a193f72670ad9 DE-627 ger DE-627 rakwb eng QR1-502 Pajau Vangay verfasserin aut Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop. data standards metadata microbiome ontology Microbiology Josephine Burgin verfasserin aut Anjanette Johnston verfasserin aut Kristen L. Beck verfasserin aut Daniel C. Berrios verfasserin aut Kai Blumberg verfasserin aut Shane Canon verfasserin aut Patrick Chain verfasserin aut John-Marc Chandonia verfasserin aut Danielle Christianson verfasserin aut Sylvain V. Costes verfasserin aut Joan Damerow verfasserin aut William D. Duncan verfasserin aut Jose Pablo Dundore-Arias verfasserin aut Kjiersten Fagnan verfasserin aut Jonathan M. Galazka verfasserin aut Sean M. Gibbons verfasserin aut David Hays verfasserin aut Judson Hervey verfasserin aut Bin Hu verfasserin aut Bonnie L. Hurwitz verfasserin aut Pankaj Jaiswal verfasserin aut Marcin P. Joachimiak verfasserin aut Linda Kinkel verfasserin aut Joshua Ladau verfasserin aut Stanton L. Martin verfasserin aut Lee Ann McCue verfasserin aut Kayd Miller verfasserin aut Nigel Mouncey verfasserin aut Chris Mungall verfasserin aut Evangelos Pafilis verfasserin aut T. B. K. Reddy verfasserin aut Lorna Richardson verfasserin aut Simon Roux verfasserin aut Lynn M. Schriml verfasserin aut Justin P. Shaffer verfasserin aut Jagadish Chandrabose Sundaramurthi verfasserin aut Luke R. Thompson verfasserin aut Ruth E. Timme verfasserin aut Jie Zheng verfasserin aut Elisha M. Wood-Charlson verfasserin aut Emiley A. Eloe-Fadrosh verfasserin aut In mSystems American Society for Microbiology, 2017 6(2021), 1 (DE-627)84597212X (DE-600)2844333-0 23795077 nnns volume:6 year:2021 number:1 https://doi.org/10.1128/mSystems.01194-20 kostenfrei https://doaj.org/article/70ee1fcbc18e476ebb6a193f72670ad9 kostenfrei https://journals.asm.org/doi/10.1128/mSystems.01194-20 kostenfrei https://doaj.org/toc/2379-5077 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2021 1
language	English
source	In mSystems 6(2021), 1 volume:6 year:2021 number:1
sourceStr	In mSystems 6(2021), 1 volume:6 year:2021 number:1
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	data standards metadata microbiome ontology Microbiology
isfreeaccess_bool	true
container_title	mSystems
authorswithroles_txt_mv	Pajau Vangay @@aut@@ Josephine Burgin @@aut@@ Anjanette Johnston @@aut@@ Kristen L. Beck @@aut@@ Daniel C. Berrios @@aut@@ Kai Blumberg @@aut@@ Shane Canon @@aut@@ Patrick Chain @@aut@@ John-Marc Chandonia @@aut@@ Danielle Christianson @@aut@@ Sylvain V. Costes @@aut@@ Joan Damerow @@aut@@ William D. Duncan @@aut@@ Jose Pablo Dundore-Arias @@aut@@ Kjiersten Fagnan @@aut@@ Jonathan M. Galazka @@aut@@ Sean M. Gibbons @@aut@@ David Hays @@aut@@ Judson Hervey @@aut@@ Bin Hu @@aut@@ Bonnie L. Hurwitz @@aut@@ Pankaj Jaiswal @@aut@@ Marcin P. Joachimiak @@aut@@ Linda Kinkel @@aut@@ Joshua Ladau @@aut@@ Stanton L. Martin @@aut@@ Lee Ann McCue @@aut@@ Kayd Miller @@aut@@ Nigel Mouncey @@aut@@ Chris Mungall @@aut@@ Evangelos Pafilis @@aut@@ T. B. K. Reddy @@aut@@ Lorna Richardson @@aut@@ Simon Roux @@aut@@ Lynn M. Schriml @@aut@@ Justin P. Shaffer @@aut@@ Jagadish Chandrabose Sundaramurthi @@aut@@ Luke R. Thompson @@aut@@ Ruth E. Timme @@aut@@ Jie Zheng @@aut@@ Elisha M. Wood-Charlson @@aut@@ Emiley A. Eloe-Fadrosh @@aut@@
publishDateDaySort_date	2021-01-01T00:00:00Z
hierarchy_top_id	84597212X
id	DOAJ075437732
language_de	englisch
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title	Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities
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title_auth	Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities
abstract	ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop.
abstractGer	ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop.
abstract_unstemmed	ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop.
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title_short	Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities
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