GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources

<p<Abstract</p< <p<Background</p< <p<The display of <it<N</it<-glycan carbohydrate structures is an essential part of glycoinformatics. Several tools exist for building such structures graphically, by selecting from a palette of symbols or sugar names, or el...
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Gespeichert in:

Autor*in:	Tipton Keith F [verfasserIn] McDonald Andrew G [verfasserIn] Stroop Corné JM [verfasserIn] Davey Gavin P [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2010

Übergeordnetes Werk:	In: BMC Research Notes - BMC, 2008, 3(2010), 1, p 173
Übergeordnetes Werk:	volume:3 ; year:2010 ; number:1, p 173

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.1186/1756-0500-3-173

Katalog-ID:	DOAJ07726021X

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allfields	10.1186/1756-0500-3-173 doi (DE-627)DOAJ07726021X (DE-599)DOAJ728085671bc8489c824f954de1d2c782 DE-627 ger DE-627 rakwb eng QH301-705.5 Q1-390 Tipton Keith F verfasserin aut GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<The display of <it<N</it<-glycan carbohydrate structures is an essential part of glycoinformatics. Several tools exist for building such structures graphically, by selecting from a palette of symbols or sugar names, or else by specifying a structure in one of the chemical naming schemes currently available.</p< <p<Findings</p< <p<In the present work we present two tools for displaying <it<N</it<-glycans found in the mammalian CHO (Chinese hamster ovary) cell line, both of which take as input a 9-digit identifier that uniquely defines each structure. The first of these, GlycoForm, is designed to display a single structure automatically from an identifier entered by the user. The display is updated in real time, using symbols for the sugar residues, or in text-only form. Structures can be added to a library, which is recorded in a preference file and loaded automatically at start. Individual structures can be saved in a variety of bitmap image formats. The second program, Glycologue, reads a file containing columnar data of nine-digit codes, which can be displayed on-screen and printed at high resolution.</p< <p<Conclusion</p< <p<A key advantage of both programs is the speed and facility with which carbohydrate structures can be drawn. It is anticipated that these programs will be useful to glycobiologists, systems biologists and biotechnologists interested in <it<N</it<-glycosylation systems in mammalian cells.</p< Medicine R Biology (General) Science (General) McDonald Andrew G verfasserin aut Stroop Corné JM verfasserin aut Davey Gavin P verfasserin aut In BMC Research Notes BMC, 2008 3(2010), 1, p 173 (DE-627)559431805 (DE-600)2413336-X 17560500 nnns volume:3 year:2010 number:1, p 173 https://doi.org/10.1186/1756-0500-3-173 kostenfrei https://doaj.org/article/728085671bc8489c824f954de1d2c782 kostenfrei http://www.biomedcentral.com/1756-0500/3/173 kostenfrei https://doaj.org/toc/1756-0500 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 3 2010 1, p 173
spelling	10.1186/1756-0500-3-173 doi (DE-627)DOAJ07726021X (DE-599)DOAJ728085671bc8489c824f954de1d2c782 DE-627 ger DE-627 rakwb eng QH301-705.5 Q1-390 Tipton Keith F verfasserin aut GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<The display of <it<N</it<-glycan carbohydrate structures is an essential part of glycoinformatics. Several tools exist for building such structures graphically, by selecting from a palette of symbols or sugar names, or else by specifying a structure in one of the chemical naming schemes currently available.</p< <p<Findings</p< <p<In the present work we present two tools for displaying <it<N</it<-glycans found in the mammalian CHO (Chinese hamster ovary) cell line, both of which take as input a 9-digit identifier that uniquely defines each structure. The first of these, GlycoForm, is designed to display a single structure automatically from an identifier entered by the user. The display is updated in real time, using symbols for the sugar residues, or in text-only form. Structures can be added to a library, which is recorded in a preference file and loaded automatically at start. Individual structures can be saved in a variety of bitmap image formats. The second program, Glycologue, reads a file containing columnar data of nine-digit codes, which can be displayed on-screen and printed at high resolution.</p< <p<Conclusion</p< <p<A key advantage of both programs is the speed and facility with which carbohydrate structures can be drawn. It is anticipated that these programs will be useful to glycobiologists, systems biologists and biotechnologists interested in <it<N</it<-glycosylation systems in mammalian cells.</p< Medicine R Biology (General) Science (General) McDonald Andrew G verfasserin aut Stroop Corné JM verfasserin aut Davey Gavin P verfasserin aut In BMC Research Notes BMC, 2008 3(2010), 1, p 173 (DE-627)559431805 (DE-600)2413336-X 17560500 nnns volume:3 year:2010 number:1, p 173 https://doi.org/10.1186/1756-0500-3-173 kostenfrei https://doaj.org/article/728085671bc8489c824f954de1d2c782 kostenfrei http://www.biomedcentral.com/1756-0500/3/173 kostenfrei https://doaj.org/toc/1756-0500 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 3 2010 1, p 173
allfields_unstemmed	10.1186/1756-0500-3-173 doi (DE-627)DOAJ07726021X (DE-599)DOAJ728085671bc8489c824f954de1d2c782 DE-627 ger DE-627 rakwb eng QH301-705.5 Q1-390 Tipton Keith F verfasserin aut GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<The display of <it<N</it<-glycan carbohydrate structures is an essential part of glycoinformatics. Several tools exist for building such structures graphically, by selecting from a palette of symbols or sugar names, or else by specifying a structure in one of the chemical naming schemes currently available.</p< <p<Findings</p< <p<In the present work we present two tools for displaying <it<N</it<-glycans found in the mammalian CHO (Chinese hamster ovary) cell line, both of which take as input a 9-digit identifier that uniquely defines each structure. The first of these, GlycoForm, is designed to display a single structure automatically from an identifier entered by the user. The display is updated in real time, using symbols for the sugar residues, or in text-only form. Structures can be added to a library, which is recorded in a preference file and loaded automatically at start. Individual structures can be saved in a variety of bitmap image formats. The second program, Glycologue, reads a file containing columnar data of nine-digit codes, which can be displayed on-screen and printed at high resolution.</p< <p<Conclusion</p< <p<A key advantage of both programs is the speed and facility with which carbohydrate structures can be drawn. It is anticipated that these programs will be useful to glycobiologists, systems biologists and biotechnologists interested in <it<N</it<-glycosylation systems in mammalian cells.</p< Medicine R Biology (General) Science (General) McDonald Andrew G verfasserin aut Stroop Corné JM verfasserin aut Davey Gavin P verfasserin aut In BMC Research Notes BMC, 2008 3(2010), 1, p 173 (DE-627)559431805 (DE-600)2413336-X 17560500 nnns volume:3 year:2010 number:1, p 173 https://doi.org/10.1186/1756-0500-3-173 kostenfrei https://doaj.org/article/728085671bc8489c824f954de1d2c782 kostenfrei http://www.biomedcentral.com/1756-0500/3/173 kostenfrei https://doaj.org/toc/1756-0500 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 3 2010 1, p 173
allfieldsGer	10.1186/1756-0500-3-173 doi (DE-627)DOAJ07726021X (DE-599)DOAJ728085671bc8489c824f954de1d2c782 DE-627 ger DE-627 rakwb eng QH301-705.5 Q1-390 Tipton Keith F verfasserin aut GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<The display of <it<N</it<-glycan carbohydrate structures is an essential part of glycoinformatics. Several tools exist for building such structures graphically, by selecting from a palette of symbols or sugar names, or else by specifying a structure in one of the chemical naming schemes currently available.</p< <p<Findings</p< <p<In the present work we present two tools for displaying <it<N</it<-glycans found in the mammalian CHO (Chinese hamster ovary) cell line, both of which take as input a 9-digit identifier that uniquely defines each structure. The first of these, GlycoForm, is designed to display a single structure automatically from an identifier entered by the user. The display is updated in real time, using symbols for the sugar residues, or in text-only form. Structures can be added to a library, which is recorded in a preference file and loaded automatically at start. Individual structures can be saved in a variety of bitmap image formats. The second program, Glycologue, reads a file containing columnar data of nine-digit codes, which can be displayed on-screen and printed at high resolution.</p< <p<Conclusion</p< <p<A key advantage of both programs is the speed and facility with which carbohydrate structures can be drawn. It is anticipated that these programs will be useful to glycobiologists, systems biologists and biotechnologists interested in <it<N</it<-glycosylation systems in mammalian cells.</p< Medicine R Biology (General) Science (General) McDonald Andrew G verfasserin aut Stroop Corné JM verfasserin aut Davey Gavin P verfasserin aut In BMC Research Notes BMC, 2008 3(2010), 1, p 173 (DE-627)559431805 (DE-600)2413336-X 17560500 nnns volume:3 year:2010 number:1, p 173 https://doi.org/10.1186/1756-0500-3-173 kostenfrei https://doaj.org/article/728085671bc8489c824f954de1d2c782 kostenfrei http://www.biomedcentral.com/1756-0500/3/173 kostenfrei https://doaj.org/toc/1756-0500 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 3 2010 1, p 173
allfieldsSound	10.1186/1756-0500-3-173 doi (DE-627)DOAJ07726021X (DE-599)DOAJ728085671bc8489c824f954de1d2c782 DE-627 ger DE-627 rakwb eng QH301-705.5 Q1-390 Tipton Keith F verfasserin aut GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <p<Abstract</p< <p<Background</p< <p<The display of <it<N</it<-glycan carbohydrate structures is an essential part of glycoinformatics. Several tools exist for building such structures graphically, by selecting from a palette of symbols or sugar names, or else by specifying a structure in one of the chemical naming schemes currently available.</p< <p<Findings</p< <p<In the present work we present two tools for displaying <it<N</it<-glycans found in the mammalian CHO (Chinese hamster ovary) cell line, both of which take as input a 9-digit identifier that uniquely defines each structure. The first of these, GlycoForm, is designed to display a single structure automatically from an identifier entered by the user. The display is updated in real time, using symbols for the sugar residues, or in text-only form. Structures can be added to a library, which is recorded in a preference file and loaded automatically at start. Individual structures can be saved in a variety of bitmap image formats. The second program, Glycologue, reads a file containing columnar data of nine-digit codes, which can be displayed on-screen and printed at high resolution.</p< <p<Conclusion</p< <p<A key advantage of both programs is the speed and facility with which carbohydrate structures can be drawn. It is anticipated that these programs will be useful to glycobiologists, systems biologists and biotechnologists interested in <it<N</it<-glycosylation systems in mammalian cells.</p< Medicine R Biology (General) Science (General) McDonald Andrew G verfasserin aut Stroop Corné JM verfasserin aut Davey Gavin P verfasserin aut In BMC Research Notes BMC, 2008 3(2010), 1, p 173 (DE-627)559431805 (DE-600)2413336-X 17560500 nnns volume:3 year:2010 number:1, p 173 https://doi.org/10.1186/1756-0500-3-173 kostenfrei https://doaj.org/article/728085671bc8489c824f954de1d2c782 kostenfrei http://www.biomedcentral.com/1756-0500/3/173 kostenfrei https://doaj.org/toc/1756-0500 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 3 2010 1, p 173
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callnumber-first	Q - Science
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spellingShingle	Tipton Keith F misc QH301-705.5 misc Q1-390 misc Medicine misc R misc Biology (General) misc Science (General) GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources
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title	GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources
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title_sort	glycoform and glycologue: two software applications for the rapid construction and display of <it<n</it<-glycans from mammalian sources
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title_auth	GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources
abstract	<p<Abstract</p< <p<Background</p< <p<The display of <it<N</it<-glycan carbohydrate structures is an essential part of glycoinformatics. Several tools exist for building such structures graphically, by selecting from a palette of symbols or sugar names, or else by specifying a structure in one of the chemical naming schemes currently available.</p< <p<Findings</p< <p<In the present work we present two tools for displaying <it<N</it<-glycans found in the mammalian CHO (Chinese hamster ovary) cell line, both of which take as input a 9-digit identifier that uniquely defines each structure. The first of these, GlycoForm, is designed to display a single structure automatically from an identifier entered by the user. The display is updated in real time, using symbols for the sugar residues, or in text-only form. Structures can be added to a library, which is recorded in a preference file and loaded automatically at start. Individual structures can be saved in a variety of bitmap image formats. The second program, Glycologue, reads a file containing columnar data of nine-digit codes, which can be displayed on-screen and printed at high resolution.</p< <p<Conclusion</p< <p<A key advantage of both programs is the speed and facility with which carbohydrate structures can be drawn. It is anticipated that these programs will be useful to glycobiologists, systems biologists and biotechnologists interested in <it<N</it<-glycosylation systems in mammalian cells.</p<
abstractGer	<p<Abstract</p< <p<Background</p< <p<The display of <it<N</it<-glycan carbohydrate structures is an essential part of glycoinformatics. Several tools exist for building such structures graphically, by selecting from a palette of symbols or sugar names, or else by specifying a structure in one of the chemical naming schemes currently available.</p< <p<Findings</p< <p<In the present work we present two tools for displaying <it<N</it<-glycans found in the mammalian CHO (Chinese hamster ovary) cell line, both of which take as input a 9-digit identifier that uniquely defines each structure. The first of these, GlycoForm, is designed to display a single structure automatically from an identifier entered by the user. The display is updated in real time, using symbols for the sugar residues, or in text-only form. Structures can be added to a library, which is recorded in a preference file and loaded automatically at start. Individual structures can be saved in a variety of bitmap image formats. The second program, Glycologue, reads a file containing columnar data of nine-digit codes, which can be displayed on-screen and printed at high resolution.</p< <p<Conclusion</p< <p<A key advantage of both programs is the speed and facility with which carbohydrate structures can be drawn. It is anticipated that these programs will be useful to glycobiologists, systems biologists and biotechnologists interested in <it<N</it<-glycosylation systems in mammalian cells.</p<
abstract_unstemmed	<p<Abstract</p< <p<Background</p< <p<The display of <it<N</it<-glycan carbohydrate structures is an essential part of glycoinformatics. Several tools exist for building such structures graphically, by selecting from a palette of symbols or sugar names, or else by specifying a structure in one of the chemical naming schemes currently available.</p< <p<Findings</p< <p<In the present work we present two tools for displaying <it<N</it<-glycans found in the mammalian CHO (Chinese hamster ovary) cell line, both of which take as input a 9-digit identifier that uniquely defines each structure. The first of these, GlycoForm, is designed to display a single structure automatically from an identifier entered by the user. The display is updated in real time, using symbols for the sugar residues, or in text-only form. Structures can be added to a library, which is recorded in a preference file and loaded automatically at start. Individual structures can be saved in a variety of bitmap image formats. The second program, Glycologue, reads a file containing columnar data of nine-digit codes, which can be displayed on-screen and printed at high resolution.</p< <p<Conclusion</p< <p<A key advantage of both programs is the speed and facility with which carbohydrate structures can be drawn. It is anticipated that these programs will be useful to glycobiologists, systems biologists and biotechnologists interested in <it<N</it<-glycosylation systems in mammalian cells.</p<
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title_short	GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources
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GlycoForm and Glycologue: two software applications for the rapid construction and display of <it<N</it<-glycans from mammalian sources

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