Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico

Rodents and bats are the most diverse mammal group that host <i<Bartonella</i< species. In the Americas, they were described as harboring <i<Bartonella</i< species; however, they were mostly characterized to the genotypic level. We describe here <i<Bartonella</i<...
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Autor*in:	Jonathan Gonçalves-Oliveira [verfasserIn] Ricardo Gutierrez [verfasserIn] Cory Lee Schlesener [verfasserIn] David A. Jaffe [verfasserIn] Alvaro Aguilar-Setién [verfasserIn] Henri-Jean Boulouis [verfasserIn] Yaarit Nachum-Biala [verfasserIn] Bihua C. Huang [verfasserIn] Bart C. Weimer [verfasserIn] Bruno B. Chomel [verfasserIn] Shimon Harrus [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	genomes rodents bats Mexico

Übergeordnetes Werk:	In: Microorganisms - MDPI AG, 2013, 11(2023), 2, p 340
Übergeordnetes Werk:	volume:11 ; year:2023 ; number:2, p 340

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/microorganisms11020340

Katalog-ID:	DOAJ080021581

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allfields	10.3390/microorganisms11020340 doi (DE-627)DOAJ080021581 (DE-599)DOAJ0221bb3344ae447ca872208e6e33cdb2 DE-627 ger DE-627 rakwb eng QH301-705.5 Jonathan Gonçalves-Oliveira verfasserin aut Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rodents and bats are the most diverse mammal group that host <i<Bartonella</i< species. In the Americas, they were described as harboring <i<Bartonella</i< species; however, they were mostly characterized to the genotypic level. We describe here <i<Bartonella</i< isolates obtained from blood samples of one rodent (<i<Peromyscus yucatanicus</i< from San José Pibtuch, Yucatan) and two bat species (<i<Desmodus rotundus</i< from Progreso, and <i<Pteronotus parnellii</i< from Chamela-Cuitzmala) from Mexico. We sequenced and described the genomic features of three <i<Bartonella</i< strains and performed phylogenomic and pangenome analyses to decipher their phylogenetic relationships. The mouse-associated genome was closely related to <i<Bartonella vinsonii</i<. The two bat-associated genomes clustered into a single distinct clade in between lineages 3 and 4, suggesting to be an ancestor of the rodent-associated <i<Bartonella</i< clade (lineage 4). These three genomes showed <95% OrthoANI values compared to any other <i<Bartonella</i< genome, and therefore should be considered as novel species. In addition, our analyses suggest that the <i<B. vinsonii</i< complex should be revised, and all <i<B. vinsonii</i< subspecies need to be renamed and considered as full species. The phylogenomic clustering of the bat-associated <i<Bartonella</i< strains and their virulence factor profile (lack of the Vbh/TraG conjugation system remains of the T4SS) suggest that it should be considered as a new lineage clade (L5) within the <i<Bartonella</i< genus. <i<Bartonella</i< genomes rodents bats Mexico Biology (General) Ricardo Gutierrez verfasserin aut Cory Lee Schlesener verfasserin aut David A. Jaffe verfasserin aut Alvaro Aguilar-Setién verfasserin aut Henri-Jean Boulouis verfasserin aut Yaarit Nachum-Biala verfasserin aut Bihua C. Huang verfasserin aut Bart C. Weimer verfasserin aut Bruno B. Chomel verfasserin aut Shimon Harrus verfasserin aut In Microorganisms MDPI AG, 2013 11(2023), 2, p 340 (DE-627)750370696 (DE-600)2720891-6 20762607 nnns volume:11 year:2023 number:2, p 340 https://doi.org/10.3390/microorganisms11020340 kostenfrei https://doaj.org/article/0221bb3344ae447ca872208e6e33cdb2 kostenfrei https://www.mdpi.com/2076-2607/11/2/340 kostenfrei https://doaj.org/toc/2076-2607 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2023 2, p 340
spelling	10.3390/microorganisms11020340 doi (DE-627)DOAJ080021581 (DE-599)DOAJ0221bb3344ae447ca872208e6e33cdb2 DE-627 ger DE-627 rakwb eng QH301-705.5 Jonathan Gonçalves-Oliveira verfasserin aut Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rodents and bats are the most diverse mammal group that host <i<Bartonella</i< species. In the Americas, they were described as harboring <i<Bartonella</i< species; however, they were mostly characterized to the genotypic level. We describe here <i<Bartonella</i< isolates obtained from blood samples of one rodent (<i<Peromyscus yucatanicus</i< from San José Pibtuch, Yucatan) and two bat species (<i<Desmodus rotundus</i< from Progreso, and <i<Pteronotus parnellii</i< from Chamela-Cuitzmala) from Mexico. We sequenced and described the genomic features of three <i<Bartonella</i< strains and performed phylogenomic and pangenome analyses to decipher their phylogenetic relationships. The mouse-associated genome was closely related to <i<Bartonella vinsonii</i<. The two bat-associated genomes clustered into a single distinct clade in between lineages 3 and 4, suggesting to be an ancestor of the rodent-associated <i<Bartonella</i< clade (lineage 4). These three genomes showed <95% OrthoANI values compared to any other <i<Bartonella</i< genome, and therefore should be considered as novel species. In addition, our analyses suggest that the <i<B. vinsonii</i< complex should be revised, and all <i<B. vinsonii</i< subspecies need to be renamed and considered as full species. The phylogenomic clustering of the bat-associated <i<Bartonella</i< strains and their virulence factor profile (lack of the Vbh/TraG conjugation system remains of the T4SS) suggest that it should be considered as a new lineage clade (L5) within the <i<Bartonella</i< genus. <i<Bartonella</i< genomes rodents bats Mexico Biology (General) Ricardo Gutierrez verfasserin aut Cory Lee Schlesener verfasserin aut David A. Jaffe verfasserin aut Alvaro Aguilar-Setién verfasserin aut Henri-Jean Boulouis verfasserin aut Yaarit Nachum-Biala verfasserin aut Bihua C. Huang verfasserin aut Bart C. Weimer verfasserin aut Bruno B. Chomel verfasserin aut Shimon Harrus verfasserin aut In Microorganisms MDPI AG, 2013 11(2023), 2, p 340 (DE-627)750370696 (DE-600)2720891-6 20762607 nnns volume:11 year:2023 number:2, p 340 https://doi.org/10.3390/microorganisms11020340 kostenfrei https://doaj.org/article/0221bb3344ae447ca872208e6e33cdb2 kostenfrei https://www.mdpi.com/2076-2607/11/2/340 kostenfrei https://doaj.org/toc/2076-2607 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2023 2, p 340
allfields_unstemmed	10.3390/microorganisms11020340 doi (DE-627)DOAJ080021581 (DE-599)DOAJ0221bb3344ae447ca872208e6e33cdb2 DE-627 ger DE-627 rakwb eng QH301-705.5 Jonathan Gonçalves-Oliveira verfasserin aut Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rodents and bats are the most diverse mammal group that host <i<Bartonella</i< species. In the Americas, they were described as harboring <i<Bartonella</i< species; however, they were mostly characterized to the genotypic level. We describe here <i<Bartonella</i< isolates obtained from blood samples of one rodent (<i<Peromyscus yucatanicus</i< from San José Pibtuch, Yucatan) and two bat species (<i<Desmodus rotundus</i< from Progreso, and <i<Pteronotus parnellii</i< from Chamela-Cuitzmala) from Mexico. We sequenced and described the genomic features of three <i<Bartonella</i< strains and performed phylogenomic and pangenome analyses to decipher their phylogenetic relationships. The mouse-associated genome was closely related to <i<Bartonella vinsonii</i<. The two bat-associated genomes clustered into a single distinct clade in between lineages 3 and 4, suggesting to be an ancestor of the rodent-associated <i<Bartonella</i< clade (lineage 4). These three genomes showed <95% OrthoANI values compared to any other <i<Bartonella</i< genome, and therefore should be considered as novel species. In addition, our analyses suggest that the <i<B. vinsonii</i< complex should be revised, and all <i<B. vinsonii</i< subspecies need to be renamed and considered as full species. The phylogenomic clustering of the bat-associated <i<Bartonella</i< strains and their virulence factor profile (lack of the Vbh/TraG conjugation system remains of the T4SS) suggest that it should be considered as a new lineage clade (L5) within the <i<Bartonella</i< genus. <i<Bartonella</i< genomes rodents bats Mexico Biology (General) Ricardo Gutierrez verfasserin aut Cory Lee Schlesener verfasserin aut David A. Jaffe verfasserin aut Alvaro Aguilar-Setién verfasserin aut Henri-Jean Boulouis verfasserin aut Yaarit Nachum-Biala verfasserin aut Bihua C. Huang verfasserin aut Bart C. Weimer verfasserin aut Bruno B. Chomel verfasserin aut Shimon Harrus verfasserin aut In Microorganisms MDPI AG, 2013 11(2023), 2, p 340 (DE-627)750370696 (DE-600)2720891-6 20762607 nnns volume:11 year:2023 number:2, p 340 https://doi.org/10.3390/microorganisms11020340 kostenfrei https://doaj.org/article/0221bb3344ae447ca872208e6e33cdb2 kostenfrei https://www.mdpi.com/2076-2607/11/2/340 kostenfrei https://doaj.org/toc/2076-2607 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2023 2, p 340
allfieldsGer	10.3390/microorganisms11020340 doi (DE-627)DOAJ080021581 (DE-599)DOAJ0221bb3344ae447ca872208e6e33cdb2 DE-627 ger DE-627 rakwb eng QH301-705.5 Jonathan Gonçalves-Oliveira verfasserin aut Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rodents and bats are the most diverse mammal group that host <i<Bartonella</i< species. In the Americas, they were described as harboring <i<Bartonella</i< species; however, they were mostly characterized to the genotypic level. We describe here <i<Bartonella</i< isolates obtained from blood samples of one rodent (<i<Peromyscus yucatanicus</i< from San José Pibtuch, Yucatan) and two bat species (<i<Desmodus rotundus</i< from Progreso, and <i<Pteronotus parnellii</i< from Chamela-Cuitzmala) from Mexico. We sequenced and described the genomic features of three <i<Bartonella</i< strains and performed phylogenomic and pangenome analyses to decipher their phylogenetic relationships. The mouse-associated genome was closely related to <i<Bartonella vinsonii</i<. The two bat-associated genomes clustered into a single distinct clade in between lineages 3 and 4, suggesting to be an ancestor of the rodent-associated <i<Bartonella</i< clade (lineage 4). These three genomes showed <95% OrthoANI values compared to any other <i<Bartonella</i< genome, and therefore should be considered as novel species. In addition, our analyses suggest that the <i<B. vinsonii</i< complex should be revised, and all <i<B. vinsonii</i< subspecies need to be renamed and considered as full species. The phylogenomic clustering of the bat-associated <i<Bartonella</i< strains and their virulence factor profile (lack of the Vbh/TraG conjugation system remains of the T4SS) suggest that it should be considered as a new lineage clade (L5) within the <i<Bartonella</i< genus. <i<Bartonella</i< genomes rodents bats Mexico Biology (General) Ricardo Gutierrez verfasserin aut Cory Lee Schlesener verfasserin aut David A. Jaffe verfasserin aut Alvaro Aguilar-Setién verfasserin aut Henri-Jean Boulouis verfasserin aut Yaarit Nachum-Biala verfasserin aut Bihua C. Huang verfasserin aut Bart C. Weimer verfasserin aut Bruno B. Chomel verfasserin aut Shimon Harrus verfasserin aut In Microorganisms MDPI AG, 2013 11(2023), 2, p 340 (DE-627)750370696 (DE-600)2720891-6 20762607 nnns volume:11 year:2023 number:2, p 340 https://doi.org/10.3390/microorganisms11020340 kostenfrei https://doaj.org/article/0221bb3344ae447ca872208e6e33cdb2 kostenfrei https://www.mdpi.com/2076-2607/11/2/340 kostenfrei https://doaj.org/toc/2076-2607 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2023 2, p 340
allfieldsSound	10.3390/microorganisms11020340 doi (DE-627)DOAJ080021581 (DE-599)DOAJ0221bb3344ae447ca872208e6e33cdb2 DE-627 ger DE-627 rakwb eng QH301-705.5 Jonathan Gonçalves-Oliveira verfasserin aut Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rodents and bats are the most diverse mammal group that host <i<Bartonella</i< species. In the Americas, they were described as harboring <i<Bartonella</i< species; however, they were mostly characterized to the genotypic level. We describe here <i<Bartonella</i< isolates obtained from blood samples of one rodent (<i<Peromyscus yucatanicus</i< from San José Pibtuch, Yucatan) and two bat species (<i<Desmodus rotundus</i< from Progreso, and <i<Pteronotus parnellii</i< from Chamela-Cuitzmala) from Mexico. We sequenced and described the genomic features of three <i<Bartonella</i< strains and performed phylogenomic and pangenome analyses to decipher their phylogenetic relationships. The mouse-associated genome was closely related to <i<Bartonella vinsonii</i<. The two bat-associated genomes clustered into a single distinct clade in between lineages 3 and 4, suggesting to be an ancestor of the rodent-associated <i<Bartonella</i< clade (lineage 4). These three genomes showed <95% OrthoANI values compared to any other <i<Bartonella</i< genome, and therefore should be considered as novel species. In addition, our analyses suggest that the <i<B. vinsonii</i< complex should be revised, and all <i<B. vinsonii</i< subspecies need to be renamed and considered as full species. The phylogenomic clustering of the bat-associated <i<Bartonella</i< strains and their virulence factor profile (lack of the Vbh/TraG conjugation system remains of the T4SS) suggest that it should be considered as a new lineage clade (L5) within the <i<Bartonella</i< genus. <i<Bartonella</i< genomes rodents bats Mexico Biology (General) Ricardo Gutierrez verfasserin aut Cory Lee Schlesener verfasserin aut David A. Jaffe verfasserin aut Alvaro Aguilar-Setién verfasserin aut Henri-Jean Boulouis verfasserin aut Yaarit Nachum-Biala verfasserin aut Bihua C. Huang verfasserin aut Bart C. Weimer verfasserin aut Bruno B. Chomel verfasserin aut Shimon Harrus verfasserin aut In Microorganisms MDPI AG, 2013 11(2023), 2, p 340 (DE-627)750370696 (DE-600)2720891-6 20762607 nnns volume:11 year:2023 number:2, p 340 https://doi.org/10.3390/microorganisms11020340 kostenfrei https://doaj.org/article/0221bb3344ae447ca872208e6e33cdb2 kostenfrei https://www.mdpi.com/2076-2607/11/2/340 kostenfrei https://doaj.org/toc/2076-2607 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2023 2, p 340
language	English
source	In Microorganisms 11(2023), 2, p 340 volume:11 year:2023 number:2, p 340
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topic_facet	<i<Bartonella</i< genomes rodents bats Mexico Biology (General)
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author	Jonathan Gonçalves-Oliveira
spellingShingle	Jonathan Gonçalves-Oliveira misc QH301-705.5 misc <i<Bartonella</i< misc genomes misc rodents misc bats misc Mexico misc Biology (General) Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico
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issn	20762607
topic_title	QH301-705.5 Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico <i<Bartonella</i< genomes rodents bats Mexico
topic	misc QH301-705.5 misc <i<Bartonella</i< misc genomes misc rodents misc bats misc Mexico misc Biology (General)
topic_unstemmed	misc QH301-705.5 misc <i<Bartonella</i< misc genomes misc rodents misc bats misc Mexico misc Biology (General)
topic_browse	misc QH301-705.5 misc <i<Bartonella</i< misc genomes misc rodents misc bats misc Mexico misc Biology (General)
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title	Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico
ctrlnum	(DE-627)DOAJ080021581 (DE-599)DOAJ0221bb3344ae447ca872208e6e33cdb2
title_full	Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico
author_sort	Jonathan Gonçalves-Oliveira
journal	Microorganisms
journalStr	Microorganisms
callnumber-first-code	Q
lang_code	eng
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author_browse	Jonathan Gonçalves-Oliveira Ricardo Gutierrez Cory Lee Schlesener David A. Jaffe Alvaro Aguilar-Setién Henri-Jean Boulouis Yaarit Nachum-Biala Bihua C. Huang Bart C. Weimer Bruno B. Chomel Shimon Harrus
container_volume	11
class	QH301-705.5
format_se	Elektronische Aufsätze
author-letter	Jonathan Gonçalves-Oliveira
doi_str_mv	10.3390/microorganisms11020340
author2-role	verfasserin
title_sort	genomic characterization of three novel <i<bartonella</i< strains in a rodent and two bat species from mexico
callnumber	QH301-705.5
title_auth	Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico
abstract	Rodents and bats are the most diverse mammal group that host <i<Bartonella</i< species. In the Americas, they were described as harboring <i<Bartonella</i< species; however, they were mostly characterized to the genotypic level. We describe here <i<Bartonella</i< isolates obtained from blood samples of one rodent (<i<Peromyscus yucatanicus</i< from San José Pibtuch, Yucatan) and two bat species (<i<Desmodus rotundus</i< from Progreso, and <i<Pteronotus parnellii</i< from Chamela-Cuitzmala) from Mexico. We sequenced and described the genomic features of three <i<Bartonella</i< strains and performed phylogenomic and pangenome analyses to decipher their phylogenetic relationships. The mouse-associated genome was closely related to <i<Bartonella vinsonii</i<. The two bat-associated genomes clustered into a single distinct clade in between lineages 3 and 4, suggesting to be an ancestor of the rodent-associated <i<Bartonella</i< clade (lineage 4). These three genomes showed <95% OrthoANI values compared to any other <i<Bartonella</i< genome, and therefore should be considered as novel species. In addition, our analyses suggest that the <i<B. vinsonii</i< complex should be revised, and all <i<B. vinsonii</i< subspecies need to be renamed and considered as full species. The phylogenomic clustering of the bat-associated <i<Bartonella</i< strains and their virulence factor profile (lack of the Vbh/TraG conjugation system remains of the T4SS) suggest that it should be considered as a new lineage clade (L5) within the <i<Bartonella</i< genus.
abstractGer	Rodents and bats are the most diverse mammal group that host <i<Bartonella</i< species. In the Americas, they were described as harboring <i<Bartonella</i< species; however, they were mostly characterized to the genotypic level. We describe here <i<Bartonella</i< isolates obtained from blood samples of one rodent (<i<Peromyscus yucatanicus</i< from San José Pibtuch, Yucatan) and two bat species (<i<Desmodus rotundus</i< from Progreso, and <i<Pteronotus parnellii</i< from Chamela-Cuitzmala) from Mexico. We sequenced and described the genomic features of three <i<Bartonella</i< strains and performed phylogenomic and pangenome analyses to decipher their phylogenetic relationships. The mouse-associated genome was closely related to <i<Bartonella vinsonii</i<. The two bat-associated genomes clustered into a single distinct clade in between lineages 3 and 4, suggesting to be an ancestor of the rodent-associated <i<Bartonella</i< clade (lineage 4). These three genomes showed <95% OrthoANI values compared to any other <i<Bartonella</i< genome, and therefore should be considered as novel species. In addition, our analyses suggest that the <i<B. vinsonii</i< complex should be revised, and all <i<B. vinsonii</i< subspecies need to be renamed and considered as full species. The phylogenomic clustering of the bat-associated <i<Bartonella</i< strains and their virulence factor profile (lack of the Vbh/TraG conjugation system remains of the T4SS) suggest that it should be considered as a new lineage clade (L5) within the <i<Bartonella</i< genus.
abstract_unstemmed	Rodents and bats are the most diverse mammal group that host <i<Bartonella</i< species. In the Americas, they were described as harboring <i<Bartonella</i< species; however, they were mostly characterized to the genotypic level. We describe here <i<Bartonella</i< isolates obtained from blood samples of one rodent (<i<Peromyscus yucatanicus</i< from San José Pibtuch, Yucatan) and two bat species (<i<Desmodus rotundus</i< from Progreso, and <i<Pteronotus parnellii</i< from Chamela-Cuitzmala) from Mexico. We sequenced and described the genomic features of three <i<Bartonella</i< strains and performed phylogenomic and pangenome analyses to decipher their phylogenetic relationships. The mouse-associated genome was closely related to <i<Bartonella vinsonii</i<. The two bat-associated genomes clustered into a single distinct clade in between lineages 3 and 4, suggesting to be an ancestor of the rodent-associated <i<Bartonella</i< clade (lineage 4). These three genomes showed <95% OrthoANI values compared to any other <i<Bartonella</i< genome, and therefore should be considered as novel species. In addition, our analyses suggest that the <i<B. vinsonii</i< complex should be revised, and all <i<B. vinsonii</i< subspecies need to be renamed and considered as full species. The phylogenomic clustering of the bat-associated <i<Bartonella</i< strains and their virulence factor profile (lack of the Vbh/TraG conjugation system remains of the T4SS) suggest that it should be considered as a new lineage clade (L5) within the <i<Bartonella</i< genus.
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container_issue	2, p 340
title_short	Genomic Characterization of Three Novel <i<Bartonella</i< Strains in a Rodent and Two Bat Species from Mexico
url	https://doi.org/10.3390/microorganisms11020340 https://doaj.org/article/0221bb3344ae447ca872208e6e33cdb2 https://www.mdpi.com/2076-2607/11/2/340 https://doaj.org/toc/2076-2607
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author2	Ricardo Gutierrez Cory Lee Schlesener David A. Jaffe Alvaro Aguilar-Setién Henri-Jean Boulouis Yaarit Nachum-Biala Bihua C. Huang Bart C. Weimer Bruno B. Chomel Shimon Harrus
author2Str	Ricardo Gutierrez Cory Lee Schlesener David A. Jaffe Alvaro Aguilar-Setién Henri-Jean Boulouis Yaarit Nachum-Biala Bihua C. Huang Bart C. Weimer Bruno B. Chomel Shimon Harrus
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up_date	2024-07-04T01:45:56.821Z
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