Distinguishing venomous jellyfish species via high resolution melting analysis

Accurate species identification is critical for highly venomous jellyfish studies particularly for evaluation of their distribution as it is important not only for understanding population dynamics but also predicting risk to locals and tourists. Hazardous jellyfish species have been determined usin...
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Autor*in:	Maslin Osathanunkul [verfasserIn] Nipitpong Sawongta [verfasserIn] Nuankanya Sathirapongsasuti [verfasserIn] Thunyaporn Poonsawat [verfasserIn] Usawadee Detsri [verfasserIn] Charatsee Aungtonya [verfasserIn] Chatmongkon Suwannapoom [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2022

Schlagwörter:	Andaman Sea box jellyfish Gulf of Thailand melting profile species discrimination approach

Übergeordnetes Werk:	In: Frontiers in Marine Science - Frontiers Media S.A., 2015, 9(2022)
Übergeordnetes Werk:	volume:9 ; year:2022

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3389/fmars.2022.1019473

Katalog-ID:	DOAJ083254110

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spelling	10.3389/fmars.2022.1019473 doi (DE-627)DOAJ083254110 (DE-599)DOAJ6b4c9931a04d4f7087614df94264e230 DE-627 ger DE-627 rakwb eng QH1-199.5 Maslin Osathanunkul verfasserin aut Distinguishing venomous jellyfish species via high resolution melting analysis 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Accurate species identification is critical for highly venomous jellyfish studies particularly for evaluation of their distribution as it is important not only for understanding population dynamics but also predicting risk to locals and tourists. Hazardous jellyfish species have been determined using methods such as comparative morphology and chemistry, which are less useful and practical in some cases. A few molecular methods have been developed in aiding hazardous jellyfish species identification. However, no studies have focused on designing and developing high resolution melting (HRM) assays to distinguish jellyfish species from each other. This is despite several studies showing the potential of HRM in effectively distinguishing plants and animals. In this study, we developed an HRM method to differentiate jellyfish species in five box jellyfish families (Carukiidae, Chirodropidae, Chiropsalmidae, Chiropsellidae, and Tripedaliidae) and Physaliidae found in Thai waters. All jellyfish samples (10 species) were able to be distinguished by the HRM with 16S rRNA primers. Even closely related species in the same genus could be clearly discriminated by their melting profiles. The melting curves of the 10 species were then used as references. By comparing the normalized melting curves of twenty-two jellyfish specimens with the reference curves, the tested specimens were assigned into species. In addition, HRM results of all jellyfish specimens tested in this study were similar to those of morphological based identification by experts. This is the first attempt of using HRM analysis to determine species of jellyfish collected from Thai waters. Andaman Sea box jellyfish Gulf of Thailand melting profile species discrimination approach Science Q General. Including nature conservation, geographical distribution Maslin Osathanunkul verfasserin aut Nipitpong Sawongta verfasserin aut Nuankanya Sathirapongsasuti verfasserin aut Nuankanya Sathirapongsasuti verfasserin aut Thunyaporn Poonsawat verfasserin aut Thunyaporn Poonsawat verfasserin aut Usawadee Detsri verfasserin aut Usawadee Detsri verfasserin aut Charatsee Aungtonya verfasserin aut Chatmongkon Suwannapoom verfasserin aut In Frontiers in Marine Science Frontiers Media S.A., 2015 9(2022) (DE-627)779393945 (DE-600)2757748-X 22967745 nnns volume:9 year:2022 https://doi.org/10.3389/fmars.2022.1019473 kostenfrei https://doaj.org/article/6b4c9931a04d4f7087614df94264e230 kostenfrei https://www.frontiersin.org/articles/10.3389/fmars.2022.1019473/full kostenfrei https://doaj.org/toc/2296-7745 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2022
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allfieldsGer	10.3389/fmars.2022.1019473 doi (DE-627)DOAJ083254110 (DE-599)DOAJ6b4c9931a04d4f7087614df94264e230 DE-627 ger DE-627 rakwb eng QH1-199.5 Maslin Osathanunkul verfasserin aut Distinguishing venomous jellyfish species via high resolution melting analysis 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Accurate species identification is critical for highly venomous jellyfish studies particularly for evaluation of their distribution as it is important not only for understanding population dynamics but also predicting risk to locals and tourists. Hazardous jellyfish species have been determined using methods such as comparative morphology and chemistry, which are less useful and practical in some cases. A few molecular methods have been developed in aiding hazardous jellyfish species identification. However, no studies have focused on designing and developing high resolution melting (HRM) assays to distinguish jellyfish species from each other. This is despite several studies showing the potential of HRM in effectively distinguishing plants and animals. In this study, we developed an HRM method to differentiate jellyfish species in five box jellyfish families (Carukiidae, Chirodropidae, Chiropsalmidae, Chiropsellidae, and Tripedaliidae) and Physaliidae found in Thai waters. All jellyfish samples (10 species) were able to be distinguished by the HRM with 16S rRNA primers. Even closely related species in the same genus could be clearly discriminated by their melting profiles. The melting curves of the 10 species were then used as references. By comparing the normalized melting curves of twenty-two jellyfish specimens with the reference curves, the tested specimens were assigned into species. In addition, HRM results of all jellyfish specimens tested in this study were similar to those of morphological based identification by experts. This is the first attempt of using HRM analysis to determine species of jellyfish collected from Thai waters. Andaman Sea box jellyfish Gulf of Thailand melting profile species discrimination approach Science Q General. Including nature conservation, geographical distribution Maslin Osathanunkul verfasserin aut Nipitpong Sawongta verfasserin aut Nuankanya Sathirapongsasuti verfasserin aut Nuankanya Sathirapongsasuti verfasserin aut Thunyaporn Poonsawat verfasserin aut Thunyaporn Poonsawat verfasserin aut Usawadee Detsri verfasserin aut Usawadee Detsri verfasserin aut Charatsee Aungtonya verfasserin aut Chatmongkon Suwannapoom verfasserin aut In Frontiers in Marine Science Frontiers Media S.A., 2015 9(2022) (DE-627)779393945 (DE-600)2757748-X 22967745 nnns volume:9 year:2022 https://doi.org/10.3389/fmars.2022.1019473 kostenfrei https://doaj.org/article/6b4c9931a04d4f7087614df94264e230 kostenfrei https://www.frontiersin.org/articles/10.3389/fmars.2022.1019473/full kostenfrei https://doaj.org/toc/2296-7745 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2022
allfieldsSound	10.3389/fmars.2022.1019473 doi (DE-627)DOAJ083254110 (DE-599)DOAJ6b4c9931a04d4f7087614df94264e230 DE-627 ger DE-627 rakwb eng QH1-199.5 Maslin Osathanunkul verfasserin aut Distinguishing venomous jellyfish species via high resolution melting analysis 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Accurate species identification is critical for highly venomous jellyfish studies particularly for evaluation of their distribution as it is important not only for understanding population dynamics but also predicting risk to locals and tourists. Hazardous jellyfish species have been determined using methods such as comparative morphology and chemistry, which are less useful and practical in some cases. A few molecular methods have been developed in aiding hazardous jellyfish species identification. However, no studies have focused on designing and developing high resolution melting (HRM) assays to distinguish jellyfish species from each other. This is despite several studies showing the potential of HRM in effectively distinguishing plants and animals. In this study, we developed an HRM method to differentiate jellyfish species in five box jellyfish families (Carukiidae, Chirodropidae, Chiropsalmidae, Chiropsellidae, and Tripedaliidae) and Physaliidae found in Thai waters. All jellyfish samples (10 species) were able to be distinguished by the HRM with 16S rRNA primers. Even closely related species in the same genus could be clearly discriminated by their melting profiles. The melting curves of the 10 species were then used as references. By comparing the normalized melting curves of twenty-two jellyfish specimens with the reference curves, the tested specimens were assigned into species. In addition, HRM results of all jellyfish specimens tested in this study were similar to those of morphological based identification by experts. This is the first attempt of using HRM analysis to determine species of jellyfish collected from Thai waters. Andaman Sea box jellyfish Gulf of Thailand melting profile species discrimination approach Science Q General. Including nature conservation, geographical distribution Maslin Osathanunkul verfasserin aut Nipitpong Sawongta verfasserin aut Nuankanya Sathirapongsasuti verfasserin aut Nuankanya Sathirapongsasuti verfasserin aut Thunyaporn Poonsawat verfasserin aut Thunyaporn Poonsawat verfasserin aut Usawadee Detsri verfasserin aut Usawadee Detsri verfasserin aut Charatsee Aungtonya verfasserin aut Chatmongkon Suwannapoom verfasserin aut In Frontiers in Marine Science Frontiers Media S.A., 2015 9(2022) (DE-627)779393945 (DE-600)2757748-X 22967745 nnns volume:9 year:2022 https://doi.org/10.3389/fmars.2022.1019473 kostenfrei https://doaj.org/article/6b4c9931a04d4f7087614df94264e230 kostenfrei https://www.frontiersin.org/articles/10.3389/fmars.2022.1019473/full kostenfrei https://doaj.org/toc/2296-7745 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2022
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author	Maslin Osathanunkul
spellingShingle	Maslin Osathanunkul misc QH1-199.5 misc Andaman Sea misc box jellyfish misc Gulf of Thailand misc melting profile misc species discrimination approach misc Science misc Q misc General. Including nature conservation, geographical distribution Distinguishing venomous jellyfish species via high resolution melting analysis
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topic_title	QH1-199.5 Distinguishing venomous jellyfish species via high resolution melting analysis Andaman Sea box jellyfish Gulf of Thailand melting profile species discrimination approach
topic	misc QH1-199.5 misc Andaman Sea misc box jellyfish misc Gulf of Thailand misc melting profile misc species discrimination approach misc Science misc Q misc General. Including nature conservation, geographical distribution
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title	Distinguishing venomous jellyfish species via high resolution melting analysis
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title_full	Distinguishing venomous jellyfish species via high resolution melting analysis
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title_sort	distinguishing venomous jellyfish species via high resolution melting analysis
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title_auth	Distinguishing venomous jellyfish species via high resolution melting analysis
abstract	Accurate species identification is critical for highly venomous jellyfish studies particularly for evaluation of their distribution as it is important not only for understanding population dynamics but also predicting risk to locals and tourists. Hazardous jellyfish species have been determined using methods such as comparative morphology and chemistry, which are less useful and practical in some cases. A few molecular methods have been developed in aiding hazardous jellyfish species identification. However, no studies have focused on designing and developing high resolution melting (HRM) assays to distinguish jellyfish species from each other. This is despite several studies showing the potential of HRM in effectively distinguishing plants and animals. In this study, we developed an HRM method to differentiate jellyfish species in five box jellyfish families (Carukiidae, Chirodropidae, Chiropsalmidae, Chiropsellidae, and Tripedaliidae) and Physaliidae found in Thai waters. All jellyfish samples (10 species) were able to be distinguished by the HRM with 16S rRNA primers. Even closely related species in the same genus could be clearly discriminated by their melting profiles. The melting curves of the 10 species were then used as references. By comparing the normalized melting curves of twenty-two jellyfish specimens with the reference curves, the tested specimens were assigned into species. In addition, HRM results of all jellyfish specimens tested in this study were similar to those of morphological based identification by experts. This is the first attempt of using HRM analysis to determine species of jellyfish collected from Thai waters.
abstractGer	Accurate species identification is critical for highly venomous jellyfish studies particularly for evaluation of their distribution as it is important not only for understanding population dynamics but also predicting risk to locals and tourists. Hazardous jellyfish species have been determined using methods such as comparative morphology and chemistry, which are less useful and practical in some cases. A few molecular methods have been developed in aiding hazardous jellyfish species identification. However, no studies have focused on designing and developing high resolution melting (HRM) assays to distinguish jellyfish species from each other. This is despite several studies showing the potential of HRM in effectively distinguishing plants and animals. In this study, we developed an HRM method to differentiate jellyfish species in five box jellyfish families (Carukiidae, Chirodropidae, Chiropsalmidae, Chiropsellidae, and Tripedaliidae) and Physaliidae found in Thai waters. All jellyfish samples (10 species) were able to be distinguished by the HRM with 16S rRNA primers. Even closely related species in the same genus could be clearly discriminated by their melting profiles. The melting curves of the 10 species were then used as references. By comparing the normalized melting curves of twenty-two jellyfish specimens with the reference curves, the tested specimens were assigned into species. In addition, HRM results of all jellyfish specimens tested in this study were similar to those of morphological based identification by experts. This is the first attempt of using HRM analysis to determine species of jellyfish collected from Thai waters.
abstract_unstemmed	Accurate species identification is critical for highly venomous jellyfish studies particularly for evaluation of their distribution as it is important not only for understanding population dynamics but also predicting risk to locals and tourists. Hazardous jellyfish species have been determined using methods such as comparative morphology and chemistry, which are less useful and practical in some cases. A few molecular methods have been developed in aiding hazardous jellyfish species identification. However, no studies have focused on designing and developing high resolution melting (HRM) assays to distinguish jellyfish species from each other. This is despite several studies showing the potential of HRM in effectively distinguishing plants and animals. In this study, we developed an HRM method to differentiate jellyfish species in five box jellyfish families (Carukiidae, Chirodropidae, Chiropsalmidae, Chiropsellidae, and Tripedaliidae) and Physaliidae found in Thai waters. All jellyfish samples (10 species) were able to be distinguished by the HRM with 16S rRNA primers. Even closely related species in the same genus could be clearly discriminated by their melting profiles. The melting curves of the 10 species were then used as references. By comparing the normalized melting curves of twenty-two jellyfish specimens with the reference curves, the tested specimens were assigned into species. In addition, HRM results of all jellyfish specimens tested in this study were similar to those of morphological based identification by experts. This is the first attempt of using HRM analysis to determine species of jellyfish collected from Thai waters.
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title_short	Distinguishing venomous jellyfish species via high resolution melting analysis
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Hazardous jellyfish species have been determined using methods such as comparative morphology and chemistry, which are less useful and practical in some cases. A few molecular methods have been developed in aiding hazardous jellyfish species identification. However, no studies have focused on designing and developing high resolution melting (HRM) assays to distinguish jellyfish species from each other. This is despite several studies showing the potential of HRM in effectively distinguishing plants and animals. In this study, we developed an HRM method to differentiate jellyfish species in five box jellyfish families (Carukiidae, Chirodropidae, Chiropsalmidae, Chiropsellidae, and Tripedaliidae) and Physaliidae found in Thai waters. All jellyfish samples (10 species) were able to be distinguished by the HRM with 16S rRNA primers. Even closely related species in the same genus could be clearly discriminated by their melting profiles. The melting curves of the 10 species were then used as references. By comparing the normalized melting curves of twenty-two jellyfish specimens with the reference curves, the tested specimens were assigned into species. In addition, HRM results of all jellyfish specimens tested in this study were similar to those of morphological based identification by experts. 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Distinguishing venomous jellyfish species via high resolution melting analysis

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