Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)

Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespre...
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Autor*in:	Yifei Yu [verfasserIn] Wenyan Nong [verfasserIn] Wai Lok So [verfasserIn] Yichun Xie [verfasserIn] Ho Yin Yip [verfasserIn] Jasmine Haimovitz [verfasserIn] Thomas Swale [verfasserIn] David M. Baker [verfasserIn] William G. Bendena [verfasserIn] Ting Fung Chan [verfasserIn] Apple P. Y. Chui [verfasserIn] Kwok Fai Lau [verfasserIn] Pei-Yuan Qian [verfasserIn] Jian-Wen Qiu [verfasserIn] Benoit Thibodeau [verfasserIn] Fei Xu [verfasserIn] Jerome H. L. Hui [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2022

Schlagwörter:	coral genome Catalaphyllia microRNA sesquiterpenoid

Übergeordnetes Werk:	In: Frontiers in Marine Science - Frontiers Media S.A., 2015, 9(2022)
Übergeordnetes Werk:	volume:9 ; year:2022

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3389/fmars.2022.991391

Katalog-ID:	DOAJ084902191

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allfields	10.3389/fmars.2022.991391 doi (DE-627)DOAJ084902191 (DE-599)DOAJ4685fdd052a249bd8cda36c679085ed8 DE-627 ger DE-627 rakwb eng QH1-199.5 Yifei Yu verfasserin aut Genome of elegance coral Catalaphyllia jardinei (Euphylliidae) 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, to the South China Sea. Due to its popularity among aquarium hobbyists, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome is ~ 651.3 Mb in total length and of high physical contiguity with a scaffold N50 size of 28.9 Mb. The gene copy numbers of abiotic stress regulator (heat shock protein family genes) and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other sequenced anthozoans, and we have also identified the first set of sesquiterpenoid biosynthetic pathway genes in coral. Sequencing of small RNAs allows us to identify 35 microRNAs in C. jardinei and update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development of coral and understand their responses to climate change. Due to the easiness to culture C. jardinei in reef tanks and the established resources in this study, we propose this species be adopted as a new laboratory model in environmental and ecological experiments aiming to understand coral biology and responses to environmental stressors. coral genome Catalaphyllia microRNA sesquiterpenoid Science Q General. Including nature conservation, geographical distribution Wenyan Nong verfasserin aut Wai Lok So verfasserin aut Yichun Xie verfasserin aut Ho Yin Yip verfasserin aut Jasmine Haimovitz verfasserin aut Thomas Swale verfasserin aut David M. Baker verfasserin aut William G. Bendena verfasserin aut Ting Fung Chan verfasserin aut Apple P. Y. Chui verfasserin aut Kwok Fai Lau verfasserin aut Pei-Yuan Qian verfasserin aut Pei-Yuan Qian verfasserin aut Jian-Wen Qiu verfasserin aut Jian-Wen Qiu verfasserin aut Benoit Thibodeau verfasserin aut Fei Xu verfasserin aut Jerome H. L. Hui verfasserin aut In Frontiers in Marine Science Frontiers Media S.A., 2015 9(2022) (DE-627)779393945 (DE-600)2757748-X 22967745 nnns volume:9 year:2022 https://doi.org/10.3389/fmars.2022.991391 kostenfrei https://doaj.org/article/4685fdd052a249bd8cda36c679085ed8 kostenfrei https://www.frontiersin.org/articles/10.3389/fmars.2022.991391/full kostenfrei https://doaj.org/toc/2296-7745 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2022
spelling	10.3389/fmars.2022.991391 doi (DE-627)DOAJ084902191 (DE-599)DOAJ4685fdd052a249bd8cda36c679085ed8 DE-627 ger DE-627 rakwb eng QH1-199.5 Yifei Yu verfasserin aut Genome of elegance coral Catalaphyllia jardinei (Euphylliidae) 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, to the South China Sea. Due to its popularity among aquarium hobbyists, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome is ~ 651.3 Mb in total length and of high physical contiguity with a scaffold N50 size of 28.9 Mb. The gene copy numbers of abiotic stress regulator (heat shock protein family genes) and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other sequenced anthozoans, and we have also identified the first set of sesquiterpenoid biosynthetic pathway genes in coral. Sequencing of small RNAs allows us to identify 35 microRNAs in C. jardinei and update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development of coral and understand their responses to climate change. Due to the easiness to culture C. jardinei in reef tanks and the established resources in this study, we propose this species be adopted as a new laboratory model in environmental and ecological experiments aiming to understand coral biology and responses to environmental stressors. coral genome Catalaphyllia microRNA sesquiterpenoid Science Q General. Including nature conservation, geographical distribution Wenyan Nong verfasserin aut Wai Lok So verfasserin aut Yichun Xie verfasserin aut Ho Yin Yip verfasserin aut Jasmine Haimovitz verfasserin aut Thomas Swale verfasserin aut David M. Baker verfasserin aut William G. Bendena verfasserin aut Ting Fung Chan verfasserin aut Apple P. Y. Chui verfasserin aut Kwok Fai Lau verfasserin aut Pei-Yuan Qian verfasserin aut Pei-Yuan Qian verfasserin aut Jian-Wen Qiu verfasserin aut Jian-Wen Qiu verfasserin aut Benoit Thibodeau verfasserin aut Fei Xu verfasserin aut Jerome H. L. Hui verfasserin aut In Frontiers in Marine Science Frontiers Media S.A., 2015 9(2022) (DE-627)779393945 (DE-600)2757748-X 22967745 nnns volume:9 year:2022 https://doi.org/10.3389/fmars.2022.991391 kostenfrei https://doaj.org/article/4685fdd052a249bd8cda36c679085ed8 kostenfrei https://www.frontiersin.org/articles/10.3389/fmars.2022.991391/full kostenfrei https://doaj.org/toc/2296-7745 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2022
allfields_unstemmed	10.3389/fmars.2022.991391 doi (DE-627)DOAJ084902191 (DE-599)DOAJ4685fdd052a249bd8cda36c679085ed8 DE-627 ger DE-627 rakwb eng QH1-199.5 Yifei Yu verfasserin aut Genome of elegance coral Catalaphyllia jardinei (Euphylliidae) 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, to the South China Sea. Due to its popularity among aquarium hobbyists, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome is ~ 651.3 Mb in total length and of high physical contiguity with a scaffold N50 size of 28.9 Mb. The gene copy numbers of abiotic stress regulator (heat shock protein family genes) and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other sequenced anthozoans, and we have also identified the first set of sesquiterpenoid biosynthetic pathway genes in coral. Sequencing of small RNAs allows us to identify 35 microRNAs in C. jardinei and update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development of coral and understand their responses to climate change. Due to the easiness to culture C. jardinei in reef tanks and the established resources in this study, we propose this species be adopted as a new laboratory model in environmental and ecological experiments aiming to understand coral biology and responses to environmental stressors. coral genome Catalaphyllia microRNA sesquiterpenoid Science Q General. Including nature conservation, geographical distribution Wenyan Nong verfasserin aut Wai Lok So verfasserin aut Yichun Xie verfasserin aut Ho Yin Yip verfasserin aut Jasmine Haimovitz verfasserin aut Thomas Swale verfasserin aut David M. Baker verfasserin aut William G. Bendena verfasserin aut Ting Fung Chan verfasserin aut Apple P. Y. Chui verfasserin aut Kwok Fai Lau verfasserin aut Pei-Yuan Qian verfasserin aut Pei-Yuan Qian verfasserin aut Jian-Wen Qiu verfasserin aut Jian-Wen Qiu verfasserin aut Benoit Thibodeau verfasserin aut Fei Xu verfasserin aut Jerome H. L. Hui verfasserin aut In Frontiers in Marine Science Frontiers Media S.A., 2015 9(2022) (DE-627)779393945 (DE-600)2757748-X 22967745 nnns volume:9 year:2022 https://doi.org/10.3389/fmars.2022.991391 kostenfrei https://doaj.org/article/4685fdd052a249bd8cda36c679085ed8 kostenfrei https://www.frontiersin.org/articles/10.3389/fmars.2022.991391/full kostenfrei https://doaj.org/toc/2296-7745 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2022
allfieldsGer	10.3389/fmars.2022.991391 doi (DE-627)DOAJ084902191 (DE-599)DOAJ4685fdd052a249bd8cda36c679085ed8 DE-627 ger DE-627 rakwb eng QH1-199.5 Yifei Yu verfasserin aut Genome of elegance coral Catalaphyllia jardinei (Euphylliidae) 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, to the South China Sea. Due to its popularity among aquarium hobbyists, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome is ~ 651.3 Mb in total length and of high physical contiguity with a scaffold N50 size of 28.9 Mb. The gene copy numbers of abiotic stress regulator (heat shock protein family genes) and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other sequenced anthozoans, and we have also identified the first set of sesquiterpenoid biosynthetic pathway genes in coral. Sequencing of small RNAs allows us to identify 35 microRNAs in C. jardinei and update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development of coral and understand their responses to climate change. Due to the easiness to culture C. jardinei in reef tanks and the established resources in this study, we propose this species be adopted as a new laboratory model in environmental and ecological experiments aiming to understand coral biology and responses to environmental stressors. coral genome Catalaphyllia microRNA sesquiterpenoid Science Q General. Including nature conservation, geographical distribution Wenyan Nong verfasserin aut Wai Lok So verfasserin aut Yichun Xie verfasserin aut Ho Yin Yip verfasserin aut Jasmine Haimovitz verfasserin aut Thomas Swale verfasserin aut David M. Baker verfasserin aut William G. Bendena verfasserin aut Ting Fung Chan verfasserin aut Apple P. Y. Chui verfasserin aut Kwok Fai Lau verfasserin aut Pei-Yuan Qian verfasserin aut Pei-Yuan Qian verfasserin aut Jian-Wen Qiu verfasserin aut Jian-Wen Qiu verfasserin aut Benoit Thibodeau verfasserin aut Fei Xu verfasserin aut Jerome H. L. Hui verfasserin aut In Frontiers in Marine Science Frontiers Media S.A., 2015 9(2022) (DE-627)779393945 (DE-600)2757748-X 22967745 nnns volume:9 year:2022 https://doi.org/10.3389/fmars.2022.991391 kostenfrei https://doaj.org/article/4685fdd052a249bd8cda36c679085ed8 kostenfrei https://www.frontiersin.org/articles/10.3389/fmars.2022.991391/full kostenfrei https://doaj.org/toc/2296-7745 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2022
allfieldsSound	10.3389/fmars.2022.991391 doi (DE-627)DOAJ084902191 (DE-599)DOAJ4685fdd052a249bd8cda36c679085ed8 DE-627 ger DE-627 rakwb eng QH1-199.5 Yifei Yu verfasserin aut Genome of elegance coral Catalaphyllia jardinei (Euphylliidae) 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, to the South China Sea. Due to its popularity among aquarium hobbyists, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome is ~ 651.3 Mb in total length and of high physical contiguity with a scaffold N50 size of 28.9 Mb. The gene copy numbers of abiotic stress regulator (heat shock protein family genes) and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other sequenced anthozoans, and we have also identified the first set of sesquiterpenoid biosynthetic pathway genes in coral. Sequencing of small RNAs allows us to identify 35 microRNAs in C. jardinei and update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development of coral and understand their responses to climate change. Due to the easiness to culture C. jardinei in reef tanks and the established resources in this study, we propose this species be adopted as a new laboratory model in environmental and ecological experiments aiming to understand coral biology and responses to environmental stressors. coral genome Catalaphyllia microRNA sesquiterpenoid Science Q General. Including nature conservation, geographical distribution Wenyan Nong verfasserin aut Wai Lok So verfasserin aut Yichun Xie verfasserin aut Ho Yin Yip verfasserin aut Jasmine Haimovitz verfasserin aut Thomas Swale verfasserin aut David M. Baker verfasserin aut William G. Bendena verfasserin aut Ting Fung Chan verfasserin aut Apple P. Y. Chui verfasserin aut Kwok Fai Lau verfasserin aut Pei-Yuan Qian verfasserin aut Pei-Yuan Qian verfasserin aut Jian-Wen Qiu verfasserin aut Jian-Wen Qiu verfasserin aut Benoit Thibodeau verfasserin aut Fei Xu verfasserin aut Jerome H. L. Hui verfasserin aut In Frontiers in Marine Science Frontiers Media S.A., 2015 9(2022) (DE-627)779393945 (DE-600)2757748-X 22967745 nnns volume:9 year:2022 https://doi.org/10.3389/fmars.2022.991391 kostenfrei https://doaj.org/article/4685fdd052a249bd8cda36c679085ed8 kostenfrei https://www.frontiersin.org/articles/10.3389/fmars.2022.991391/full kostenfrei https://doaj.org/toc/2296-7745 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2022
language	English
source	In Frontiers in Marine Science 9(2022) volume:9 year:2022
sourceStr	In Frontiers in Marine Science 9(2022) volume:9 year:2022
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	coral genome Catalaphyllia microRNA sesquiterpenoid Science Q General. Including nature conservation, geographical distribution
isfreeaccess_bool	true
container_title	Frontiers in Marine Science
authorswithroles_txt_mv	Yifei Yu @@aut@@ Wenyan Nong @@aut@@ Wai Lok So @@aut@@ Yichun Xie @@aut@@ Ho Yin Yip @@aut@@ Jasmine Haimovitz @@aut@@ Thomas Swale @@aut@@ David M. Baker @@aut@@ William G. Bendena @@aut@@ Ting Fung Chan @@aut@@ Apple P. Y. Chui @@aut@@ Kwok Fai Lau @@aut@@ Pei-Yuan Qian @@aut@@ Jian-Wen Qiu @@aut@@ Benoit Thibodeau @@aut@@ Fei Xu @@aut@@ Jerome H. L. Hui @@aut@@
publishDateDaySort_date	2022-01-01T00:00:00Z
hierarchy_top_id	779393945
id	DOAJ084902191
language_de	englisch
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callnumber-first	Q - Science
author	Yifei Yu
spellingShingle	Yifei Yu misc QH1-199.5 misc coral misc genome misc Catalaphyllia misc microRNA misc sesquiterpenoid misc Science misc Q misc General. Including nature conservation, geographical distribution Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)
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topic_title	QH1-199.5 Genome of elegance coral Catalaphyllia jardinei (Euphylliidae) coral genome Catalaphyllia microRNA sesquiterpenoid
topic	misc QH1-199.5 misc coral misc genome misc Catalaphyllia misc microRNA misc sesquiterpenoid misc Science misc Q misc General. Including nature conservation, geographical distribution
topic_unstemmed	misc QH1-199.5 misc coral misc genome misc Catalaphyllia misc microRNA misc sesquiterpenoid misc Science misc Q misc General. Including nature conservation, geographical distribution
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title	Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)
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title_full	Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)
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author_browse	Yifei Yu Wenyan Nong Wai Lok So Yichun Xie Ho Yin Yip Jasmine Haimovitz Thomas Swale David M. Baker William G. Bendena Ting Fung Chan Apple P. Y. Chui Kwok Fai Lau Pei-Yuan Qian Jian-Wen Qiu Benoit Thibodeau Fei Xu Jerome H. L. Hui
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title_sort	genome of elegance coral catalaphyllia jardinei (euphylliidae)
callnumber	QH1-199.5
title_auth	Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)
abstract	Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, to the South China Sea. Due to its popularity among aquarium hobbyists, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome is ~ 651.3 Mb in total length and of high physical contiguity with a scaffold N50 size of 28.9 Mb. The gene copy numbers of abiotic stress regulator (heat shock protein family genes) and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other sequenced anthozoans, and we have also identified the first set of sesquiterpenoid biosynthetic pathway genes in coral. Sequencing of small RNAs allows us to identify 35 microRNAs in C. jardinei and update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development of coral and understand their responses to climate change. Due to the easiness to culture C. jardinei in reef tanks and the established resources in this study, we propose this species be adopted as a new laboratory model in environmental and ecological experiments aiming to understand coral biology and responses to environmental stressors.
abstractGer	Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, to the South China Sea. Due to its popularity among aquarium hobbyists, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome is ~ 651.3 Mb in total length and of high physical contiguity with a scaffold N50 size of 28.9 Mb. The gene copy numbers of abiotic stress regulator (heat shock protein family genes) and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other sequenced anthozoans, and we have also identified the first set of sesquiterpenoid biosynthetic pathway genes in coral. Sequencing of small RNAs allows us to identify 35 microRNAs in C. jardinei and update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development of coral and understand their responses to climate change. Due to the easiness to culture C. jardinei in reef tanks and the established resources in this study, we propose this species be adopted as a new laboratory model in environmental and ecological experiments aiming to understand coral biology and responses to environmental stressors.
abstract_unstemmed	Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, to the South China Sea. Due to its popularity among aquarium hobbyists, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome is ~ 651.3 Mb in total length and of high physical contiguity with a scaffold N50 size of 28.9 Mb. The gene copy numbers of abiotic stress regulator (heat shock protein family genes) and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other sequenced anthozoans, and we have also identified the first set of sesquiterpenoid biosynthetic pathway genes in coral. Sequencing of small RNAs allows us to identify 35 microRNAs in C. jardinei and update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development of coral and understand their responses to climate change. Due to the easiness to culture C. jardinei in reef tanks and the established resources in this study, we propose this species be adopted as a new laboratory model in environmental and ecological experiments aiming to understand coral biology and responses to environmental stressors.
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title_short	Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)
url	https://doi.org/10.3389/fmars.2022.991391 https://doaj.org/article/4685fdd052a249bd8cda36c679085ed8 https://www.frontiersin.org/articles/10.3389/fmars.2022.991391/full https://doaj.org/toc/2296-7745
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Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)

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