In silico evaluation of genomic characteristics of Streptococcus infantarius subsp. infantarius for application in fermentations
Abstract This study aims to evaluate the in silico genomic characteristics of Streptococcus infantarius subsp. infantarius, isolated from Coalho cheese from Paraíba, Brazil, with a view to application in lactic fermentations. rRNA sequences from the 16S ribosomal region were used as input to GenBank...
Ausführliche Beschreibung
Autor*in: |
LEANDRO P. DE BRITO [verfasserIn] DAYANE S. SANTOS [verfasserIn] NARA SUZY A. DE FREITAS [verfasserIn] ROSÁLIA S. DE MEDEIROS [verfasserIn] PAULO ROBERTO E. DE SOUZA [verfasserIn] MARIA TACIANA C.V. SOARES [verfasserIn] ANA LÚCIA F. PORTO [verfasserIn] |
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E-Artikel |
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Sprache: |
Englisch |
Erschienen: |
2022 |
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Übergeordnetes Werk: |
In: Anais da Academia Brasileira de Ciências - Academia Brasileira de Ciências, 2004, 94(2022), suppl 3 |
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Übergeordnetes Werk: |
volume:94 ; year:2022 ; number:suppl 3 |
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Link aufrufen |
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DOI / URN: |
10.1590/0001-3765202220211447 |
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Katalog-ID: |
DOAJ08575479X |
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10.1590/0001-3765202220211447 doi (DE-627)DOAJ08575479X (DE-599)DOAJbcac3f828e1d41e9828e8555763d8a57 DE-627 ger DE-627 rakwb eng LEANDRO P. DE BRITO verfasserin aut In silico evaluation of genomic characteristics of Streptococcus infantarius subsp. infantarius for application in fermentations 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract This study aims to evaluate the in silico genomic characteristics of Streptococcus infantarius subsp. infantarius, isolated from Coalho cheese from Paraíba, Brazil, with a view to application in lactic fermentations. rRNA sequences from the 16S ribosomal region were used as input to GenBank, in the search for patterns that could reveal a non-pathogenic behavior of S. infantarius subsp. infantarius, comparing mobile genetic elements, antibiotic resistance genes, pan-genome analysis and multi-genome alignment among related species. S. infantarius subsp. infantarius CJ18 was the only complete genome reported by BLAST/NCBI with high similarity and after comparative genetics with complete genomes of Streptococcus agalactiae (SAG153, NJ1606) and Streptococcus thermophilus (ST106, CS18, IDCC2201, APC151) revealed that CJ18 showed a low number of transposases and integrases, infection by phage bacteria of the Streptococcus genus, absence of antibiotic resistance genes and presence of bacteriocin, folate and riboflavin producing genes. The genome alignment revealed that the collinear blocks of S. thermophilus ST106 and S. agalactiae SAG153 have inverted blocks when compared to the CJ18 genome due to gene positioning, insertions and deletions. Therefore, the strains of S. infantarius subsp. infantarius isolated from Coalho cheese from Paraíba showed genomic similarity with CJ18 and the mobility of genes analyzed in silico showed absence of pathogenicity throughout the genome of CJ18, indicating the potential of these strains for the dairy industry. Comparative Genomics dairy industry mobile genetic elements Streptococcus infantarius subs Science Q DAYANE S. SANTOS verfasserin aut NARA SUZY A. DE FREITAS verfasserin aut ROSÁLIA S. DE MEDEIROS verfasserin aut PAULO ROBERTO E. DE SOUZA verfasserin aut MARIA TACIANA C.V. SOARES verfasserin aut ANA LÚCIA F. PORTO verfasserin aut In Anais da Academia Brasileira de Ciências Academia Brasileira de Ciências, 2004 94(2022), suppl 3 (DE-627)329269984 (DE-600)2046885-4 16782690 nnns volume:94 year:2022 number:suppl 3 https://doi.org/10.1590/0001-3765202220211447 kostenfrei https://doaj.org/article/bcac3f828e1d41e9828e8555763d8a57 kostenfrei http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652022000700904&lng=en&tlng=en kostenfrei http://www.scielo.br/pdf/aabc/v94s3/0001-3765-aabc-94-s3-e20211447.pdf kostenfrei https://doaj.org/toc/1678-2690 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_171 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 94 2022 suppl 3 |
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10.1590/0001-3765202220211447 doi (DE-627)DOAJ08575479X (DE-599)DOAJbcac3f828e1d41e9828e8555763d8a57 DE-627 ger DE-627 rakwb eng LEANDRO P. DE BRITO verfasserin aut In silico evaluation of genomic characteristics of Streptococcus infantarius subsp. infantarius for application in fermentations 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract This study aims to evaluate the in silico genomic characteristics of Streptococcus infantarius subsp. infantarius, isolated from Coalho cheese from Paraíba, Brazil, with a view to application in lactic fermentations. rRNA sequences from the 16S ribosomal region were used as input to GenBank, in the search for patterns that could reveal a non-pathogenic behavior of S. infantarius subsp. infantarius, comparing mobile genetic elements, antibiotic resistance genes, pan-genome analysis and multi-genome alignment among related species. S. infantarius subsp. infantarius CJ18 was the only complete genome reported by BLAST/NCBI with high similarity and after comparative genetics with complete genomes of Streptococcus agalactiae (SAG153, NJ1606) and Streptococcus thermophilus (ST106, CS18, IDCC2201, APC151) revealed that CJ18 showed a low number of transposases and integrases, infection by phage bacteria of the Streptococcus genus, absence of antibiotic resistance genes and presence of bacteriocin, folate and riboflavin producing genes. The genome alignment revealed that the collinear blocks of S. thermophilus ST106 and S. agalactiae SAG153 have inverted blocks when compared to the CJ18 genome due to gene positioning, insertions and deletions. Therefore, the strains of S. infantarius subsp. infantarius isolated from Coalho cheese from Paraíba showed genomic similarity with CJ18 and the mobility of genes analyzed in silico showed absence of pathogenicity throughout the genome of CJ18, indicating the potential of these strains for the dairy industry. Comparative Genomics dairy industry mobile genetic elements Streptococcus infantarius subs Science Q DAYANE S. SANTOS verfasserin aut NARA SUZY A. DE FREITAS verfasserin aut ROSÁLIA S. DE MEDEIROS verfasserin aut PAULO ROBERTO E. DE SOUZA verfasserin aut MARIA TACIANA C.V. SOARES verfasserin aut ANA LÚCIA F. PORTO verfasserin aut In Anais da Academia Brasileira de Ciências Academia Brasileira de Ciências, 2004 94(2022), suppl 3 (DE-627)329269984 (DE-600)2046885-4 16782690 nnns volume:94 year:2022 number:suppl 3 https://doi.org/10.1590/0001-3765202220211447 kostenfrei https://doaj.org/article/bcac3f828e1d41e9828e8555763d8a57 kostenfrei http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652022000700904&lng=en&tlng=en kostenfrei http://www.scielo.br/pdf/aabc/v94s3/0001-3765-aabc-94-s3-e20211447.pdf kostenfrei https://doaj.org/toc/1678-2690 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_171 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 94 2022 suppl 3 |
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10.1590/0001-3765202220211447 doi (DE-627)DOAJ08575479X (DE-599)DOAJbcac3f828e1d41e9828e8555763d8a57 DE-627 ger DE-627 rakwb eng LEANDRO P. DE BRITO verfasserin aut In silico evaluation of genomic characteristics of Streptococcus infantarius subsp. infantarius for application in fermentations 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract This study aims to evaluate the in silico genomic characteristics of Streptococcus infantarius subsp. infantarius, isolated from Coalho cheese from Paraíba, Brazil, with a view to application in lactic fermentations. rRNA sequences from the 16S ribosomal region were used as input to GenBank, in the search for patterns that could reveal a non-pathogenic behavior of S. infantarius subsp. infantarius, comparing mobile genetic elements, antibiotic resistance genes, pan-genome analysis and multi-genome alignment among related species. S. infantarius subsp. infantarius CJ18 was the only complete genome reported by BLAST/NCBI with high similarity and after comparative genetics with complete genomes of Streptococcus agalactiae (SAG153, NJ1606) and Streptococcus thermophilus (ST106, CS18, IDCC2201, APC151) revealed that CJ18 showed a low number of transposases and integrases, infection by phage bacteria of the Streptococcus genus, absence of antibiotic resistance genes and presence of bacteriocin, folate and riboflavin producing genes. The genome alignment revealed that the collinear blocks of S. thermophilus ST106 and S. agalactiae SAG153 have inverted blocks when compared to the CJ18 genome due to gene positioning, insertions and deletions. Therefore, the strains of S. infantarius subsp. infantarius isolated from Coalho cheese from Paraíba showed genomic similarity with CJ18 and the mobility of genes analyzed in silico showed absence of pathogenicity throughout the genome of CJ18, indicating the potential of these strains for the dairy industry. Comparative Genomics dairy industry mobile genetic elements Streptococcus infantarius subs Science Q DAYANE S. SANTOS verfasserin aut NARA SUZY A. DE FREITAS verfasserin aut ROSÁLIA S. DE MEDEIROS verfasserin aut PAULO ROBERTO E. DE SOUZA verfasserin aut MARIA TACIANA C.V. SOARES verfasserin aut ANA LÚCIA F. PORTO verfasserin aut In Anais da Academia Brasileira de Ciências Academia Brasileira de Ciências, 2004 94(2022), suppl 3 (DE-627)329269984 (DE-600)2046885-4 16782690 nnns volume:94 year:2022 number:suppl 3 https://doi.org/10.1590/0001-3765202220211447 kostenfrei https://doaj.org/article/bcac3f828e1d41e9828e8555763d8a57 kostenfrei http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652022000700904&lng=en&tlng=en kostenfrei http://www.scielo.br/pdf/aabc/v94s3/0001-3765-aabc-94-s3-e20211447.pdf kostenfrei https://doaj.org/toc/1678-2690 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_171 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 94 2022 suppl 3 |
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10.1590/0001-3765202220211447 doi (DE-627)DOAJ08575479X (DE-599)DOAJbcac3f828e1d41e9828e8555763d8a57 DE-627 ger DE-627 rakwb eng LEANDRO P. DE BRITO verfasserin aut In silico evaluation of genomic characteristics of Streptococcus infantarius subsp. infantarius for application in fermentations 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract This study aims to evaluate the in silico genomic characteristics of Streptococcus infantarius subsp. infantarius, isolated from Coalho cheese from Paraíba, Brazil, with a view to application in lactic fermentations. rRNA sequences from the 16S ribosomal region were used as input to GenBank, in the search for patterns that could reveal a non-pathogenic behavior of S. infantarius subsp. infantarius, comparing mobile genetic elements, antibiotic resistance genes, pan-genome analysis and multi-genome alignment among related species. S. infantarius subsp. infantarius CJ18 was the only complete genome reported by BLAST/NCBI with high similarity and after comparative genetics with complete genomes of Streptococcus agalactiae (SAG153, NJ1606) and Streptococcus thermophilus (ST106, CS18, IDCC2201, APC151) revealed that CJ18 showed a low number of transposases and integrases, infection by phage bacteria of the Streptococcus genus, absence of antibiotic resistance genes and presence of bacteriocin, folate and riboflavin producing genes. The genome alignment revealed that the collinear blocks of S. thermophilus ST106 and S. agalactiae SAG153 have inverted blocks when compared to the CJ18 genome due to gene positioning, insertions and deletions. Therefore, the strains of S. infantarius subsp. infantarius isolated from Coalho cheese from Paraíba showed genomic similarity with CJ18 and the mobility of genes analyzed in silico showed absence of pathogenicity throughout the genome of CJ18, indicating the potential of these strains for the dairy industry. Comparative Genomics dairy industry mobile genetic elements Streptococcus infantarius subs Science Q DAYANE S. SANTOS verfasserin aut NARA SUZY A. DE FREITAS verfasserin aut ROSÁLIA S. DE MEDEIROS verfasserin aut PAULO ROBERTO E. DE SOUZA verfasserin aut MARIA TACIANA C.V. SOARES verfasserin aut ANA LÚCIA F. PORTO verfasserin aut In Anais da Academia Brasileira de Ciências Academia Brasileira de Ciências, 2004 94(2022), suppl 3 (DE-627)329269984 (DE-600)2046885-4 16782690 nnns volume:94 year:2022 number:suppl 3 https://doi.org/10.1590/0001-3765202220211447 kostenfrei https://doaj.org/article/bcac3f828e1d41e9828e8555763d8a57 kostenfrei http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652022000700904&lng=en&tlng=en kostenfrei http://www.scielo.br/pdf/aabc/v94s3/0001-3765-aabc-94-s3-e20211447.pdf kostenfrei https://doaj.org/toc/1678-2690 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_171 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 94 2022 suppl 3 |
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In silico evaluation of genomic characteristics of Streptococcus infantarius subsp. infantarius for application in fermentations |
abstract |
Abstract This study aims to evaluate the in silico genomic characteristics of Streptococcus infantarius subsp. infantarius, isolated from Coalho cheese from Paraíba, Brazil, with a view to application in lactic fermentations. rRNA sequences from the 16S ribosomal region were used as input to GenBank, in the search for patterns that could reveal a non-pathogenic behavior of S. infantarius subsp. infantarius, comparing mobile genetic elements, antibiotic resistance genes, pan-genome analysis and multi-genome alignment among related species. S. infantarius subsp. infantarius CJ18 was the only complete genome reported by BLAST/NCBI with high similarity and after comparative genetics with complete genomes of Streptococcus agalactiae (SAG153, NJ1606) and Streptococcus thermophilus (ST106, CS18, IDCC2201, APC151) revealed that CJ18 showed a low number of transposases and integrases, infection by phage bacteria of the Streptococcus genus, absence of antibiotic resistance genes and presence of bacteriocin, folate and riboflavin producing genes. The genome alignment revealed that the collinear blocks of S. thermophilus ST106 and S. agalactiae SAG153 have inverted blocks when compared to the CJ18 genome due to gene positioning, insertions and deletions. Therefore, the strains of S. infantarius subsp. infantarius isolated from Coalho cheese from Paraíba showed genomic similarity with CJ18 and the mobility of genes analyzed in silico showed absence of pathogenicity throughout the genome of CJ18, indicating the potential of these strains for the dairy industry. |
abstractGer |
Abstract This study aims to evaluate the in silico genomic characteristics of Streptococcus infantarius subsp. infantarius, isolated from Coalho cheese from Paraíba, Brazil, with a view to application in lactic fermentations. rRNA sequences from the 16S ribosomal region were used as input to GenBank, in the search for patterns that could reveal a non-pathogenic behavior of S. infantarius subsp. infantarius, comparing mobile genetic elements, antibiotic resistance genes, pan-genome analysis and multi-genome alignment among related species. S. infantarius subsp. infantarius CJ18 was the only complete genome reported by BLAST/NCBI with high similarity and after comparative genetics with complete genomes of Streptococcus agalactiae (SAG153, NJ1606) and Streptococcus thermophilus (ST106, CS18, IDCC2201, APC151) revealed that CJ18 showed a low number of transposases and integrases, infection by phage bacteria of the Streptococcus genus, absence of antibiotic resistance genes and presence of bacteriocin, folate and riboflavin producing genes. The genome alignment revealed that the collinear blocks of S. thermophilus ST106 and S. agalactiae SAG153 have inverted blocks when compared to the CJ18 genome due to gene positioning, insertions and deletions. Therefore, the strains of S. infantarius subsp. infantarius isolated from Coalho cheese from Paraíba showed genomic similarity with CJ18 and the mobility of genes analyzed in silico showed absence of pathogenicity throughout the genome of CJ18, indicating the potential of these strains for the dairy industry. |
abstract_unstemmed |
Abstract This study aims to evaluate the in silico genomic characteristics of Streptococcus infantarius subsp. infantarius, isolated from Coalho cheese from Paraíba, Brazil, with a view to application in lactic fermentations. rRNA sequences from the 16S ribosomal region were used as input to GenBank, in the search for patterns that could reveal a non-pathogenic behavior of S. infantarius subsp. infantarius, comparing mobile genetic elements, antibiotic resistance genes, pan-genome analysis and multi-genome alignment among related species. S. infantarius subsp. infantarius CJ18 was the only complete genome reported by BLAST/NCBI with high similarity and after comparative genetics with complete genomes of Streptococcus agalactiae (SAG153, NJ1606) and Streptococcus thermophilus (ST106, CS18, IDCC2201, APC151) revealed that CJ18 showed a low number of transposases and integrases, infection by phage bacteria of the Streptococcus genus, absence of antibiotic resistance genes and presence of bacteriocin, folate and riboflavin producing genes. The genome alignment revealed that the collinear blocks of S. thermophilus ST106 and S. agalactiae SAG153 have inverted blocks when compared to the CJ18 genome due to gene positioning, insertions and deletions. Therefore, the strains of S. infantarius subsp. infantarius isolated from Coalho cheese from Paraíba showed genomic similarity with CJ18 and the mobility of genes analyzed in silico showed absence of pathogenicity throughout the genome of CJ18, indicating the potential of these strains for the dairy industry. |
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container_issue |
suppl 3 |
title_short |
In silico evaluation of genomic characteristics of Streptococcus infantarius subsp. infantarius for application in fermentations |
url |
https://doi.org/10.1590/0001-3765202220211447 https://doaj.org/article/bcac3f828e1d41e9828e8555763d8a57 http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37652022000700904&lng=en&tlng=en http://www.scielo.br/pdf/aabc/v94s3/0001-3765-aabc-94-s3-e20211447.pdf https://doaj.org/toc/1678-2690 |
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author2 |
DAYANE S. SANTOS NARA SUZY A. DE FREITAS ROSÁLIA S. DE MEDEIROS PAULO ROBERTO E. DE SOUZA MARIA TACIANA C.V. SOARES ANA LÚCIA F. PORTO |
author2Str |
DAYANE S. SANTOS NARA SUZY A. DE FREITAS ROSÁLIA S. DE MEDEIROS PAULO ROBERTO E. DE SOUZA MARIA TACIANA C.V. SOARES ANA LÚCIA F. PORTO |
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doi_str |
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up_date |
2024-07-03T16:39:31.567Z |
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