Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.)

Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome...
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Autor*in:	Surendra Neupane [verfasserIn] Sarah E. Schweitzer [verfasserIn] Achal Neupane [verfasserIn] Ethan J. Andersen [verfasserIn] Anne Fennell [verfasserIn] Ruanbao Zhou [verfasserIn] Madhav P. Nepal [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2019

Schlagwörter:	Abiotic stress cellular signaling protein kinase MAPK cascade MAPK nomenclature sunflower RNA-seq

Übergeordnetes Werk:	In: Plants - MDPI AG, 2013, 8(2019), 2, p 28
Übergeordnetes Werk:	volume:8 ; year:2019 ; number:2, p 28

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/plants8020028

Katalog-ID:	DOAJ08611591X

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520			\|a Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome-wide identification of MAPK genes in <i<Helianthus annuus</i< and examine functional divergence of these genes in relation to those in nine other plant species (<i<Amborella trichopoda</i<, <i<Aquilegia coerulea</i<, <i<Arabidopsis thaliana</i<, <i<Daucus carota</i<, <i<Glycine max</i<, <i<Oryza sativa</i<, <i<Solanum lycopersicum</i<, <i<Sphagnum fallax</i<, and <i<Vitis vinifera</i<), representing diverse taxonomic groups of the Plant Kingdom. A Hidden Markov Model (HMM) profile of the MAPK genes utilized reference sequences from <i<A. thaliana</i< and <i<G. max</i<, yielding a total of 96 MPKs and 37 MKKs in the genomes of <i<A. trichopoda</i<, <i<A. coerulea</i<, <i<C. reinhardtii</i<, <i<D. carota</i<, <i<H. annuus</i<, <i<S. lycopersicum</i<, and <i<S. fallax</i<. Among them, 28 MPKs and eight MKKs were confirmed in <i<H. annuus</i<. Phylogenetic analyses revealed four clades within each subfamily. Transcriptomic analyses showed that at least 19 HaMPK and seven HaMKK genes were induced in response to salicylic acid (SA), sodium chloride (NaCl), and polyethylene glycol (Peg) in leaves and roots. Of the seven published sunflower microRNAs, five microRNA families are involved in targeting eight MPKs. Additionally, we discussed the need for using MAP Kinase nomenclature guidelines across plant species. Our identification and characterization of MAP Kinase genes would have implications in sunflower crop improvement, and in advancing our knowledge of the diversity and evolution of MAPK genes in the Plant Kingdom.
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allfields	10.3390/plants8020028 doi (DE-627)DOAJ08611591X (DE-599)DOAJcb4235760b8941dfbe38d03c5a22d8fb DE-627 ger DE-627 rakwb eng QK1-989 Surendra Neupane verfasserin aut Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.) 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome-wide identification of MAPK genes in <i<Helianthus annuus</i< and examine functional divergence of these genes in relation to those in nine other plant species (<i<Amborella trichopoda</i<, <i<Aquilegia coerulea</i<, <i<Arabidopsis thaliana</i<, <i<Daucus carota</i<, <i<Glycine max</i<, <i<Oryza sativa</i<, <i<Solanum lycopersicum</i<, <i<Sphagnum fallax</i<, and <i<Vitis vinifera</i<), representing diverse taxonomic groups of the Plant Kingdom. A Hidden Markov Model (HMM) profile of the MAPK genes utilized reference sequences from <i<A. thaliana</i< and <i<G. max</i<, yielding a total of 96 MPKs and 37 MKKs in the genomes of <i<A. trichopoda</i<, <i<A. coerulea</i<, <i<C. reinhardtii</i<, <i<D. carota</i<, <i<H. annuus</i<, <i<S. lycopersicum</i<, and <i<S. fallax</i<. Among them, 28 MPKs and eight MKKs were confirmed in <i<H. annuus</i<. Phylogenetic analyses revealed four clades within each subfamily. Transcriptomic analyses showed that at least 19 HaMPK and seven HaMKK genes were induced in response to salicylic acid (SA), sodium chloride (NaCl), and polyethylene glycol (Peg) in leaves and roots. Of the seven published sunflower microRNAs, five microRNA families are involved in targeting eight MPKs. Additionally, we discussed the need for using MAP Kinase nomenclature guidelines across plant species. Our identification and characterization of MAP Kinase genes would have implications in sunflower crop improvement, and in advancing our knowledge of the diversity and evolution of MAPK genes in the Plant Kingdom. Abiotic stress cellular signaling protein kinase MAPK cascade MAPK nomenclature sunflower RNA-seq Botany Sarah E. Schweitzer verfasserin aut Achal Neupane verfasserin aut Ethan J. Andersen verfasserin aut Anne Fennell verfasserin aut Ruanbao Zhou verfasserin aut Madhav P. Nepal verfasserin aut In Plants MDPI AG, 2013 8(2019), 2, p 28 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:8 year:2019 number:2, p 28 https://doi.org/10.3390/plants8020028 kostenfrei https://doaj.org/article/cb4235760b8941dfbe38d03c5a22d8fb kostenfrei https://www.mdpi.com/2223-7747/8/2/28 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2019 2, p 28
spelling	10.3390/plants8020028 doi (DE-627)DOAJ08611591X (DE-599)DOAJcb4235760b8941dfbe38d03c5a22d8fb DE-627 ger DE-627 rakwb eng QK1-989 Surendra Neupane verfasserin aut Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.) 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome-wide identification of MAPK genes in <i<Helianthus annuus</i< and examine functional divergence of these genes in relation to those in nine other plant species (<i<Amborella trichopoda</i<, <i<Aquilegia coerulea</i<, <i<Arabidopsis thaliana</i<, <i<Daucus carota</i<, <i<Glycine max</i<, <i<Oryza sativa</i<, <i<Solanum lycopersicum</i<, <i<Sphagnum fallax</i<, and <i<Vitis vinifera</i<), representing diverse taxonomic groups of the Plant Kingdom. A Hidden Markov Model (HMM) profile of the MAPK genes utilized reference sequences from <i<A. thaliana</i< and <i<G. max</i<, yielding a total of 96 MPKs and 37 MKKs in the genomes of <i<A. trichopoda</i<, <i<A. coerulea</i<, <i<C. reinhardtii</i<, <i<D. carota</i<, <i<H. annuus</i<, <i<S. lycopersicum</i<, and <i<S. fallax</i<. Among them, 28 MPKs and eight MKKs were confirmed in <i<H. annuus</i<. Phylogenetic analyses revealed four clades within each subfamily. Transcriptomic analyses showed that at least 19 HaMPK and seven HaMKK genes were induced in response to salicylic acid (SA), sodium chloride (NaCl), and polyethylene glycol (Peg) in leaves and roots. Of the seven published sunflower microRNAs, five microRNA families are involved in targeting eight MPKs. Additionally, we discussed the need for using MAP Kinase nomenclature guidelines across plant species. Our identification and characterization of MAP Kinase genes would have implications in sunflower crop improvement, and in advancing our knowledge of the diversity and evolution of MAPK genes in the Plant Kingdom. Abiotic stress cellular signaling protein kinase MAPK cascade MAPK nomenclature sunflower RNA-seq Botany Sarah E. Schweitzer verfasserin aut Achal Neupane verfasserin aut Ethan J. Andersen verfasserin aut Anne Fennell verfasserin aut Ruanbao Zhou verfasserin aut Madhav P. Nepal verfasserin aut In Plants MDPI AG, 2013 8(2019), 2, p 28 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:8 year:2019 number:2, p 28 https://doi.org/10.3390/plants8020028 kostenfrei https://doaj.org/article/cb4235760b8941dfbe38d03c5a22d8fb kostenfrei https://www.mdpi.com/2223-7747/8/2/28 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2019 2, p 28
allfields_unstemmed	10.3390/plants8020028 doi (DE-627)DOAJ08611591X (DE-599)DOAJcb4235760b8941dfbe38d03c5a22d8fb DE-627 ger DE-627 rakwb eng QK1-989 Surendra Neupane verfasserin aut Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.) 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome-wide identification of MAPK genes in <i<Helianthus annuus</i< and examine functional divergence of these genes in relation to those in nine other plant species (<i<Amborella trichopoda</i<, <i<Aquilegia coerulea</i<, <i<Arabidopsis thaliana</i<, <i<Daucus carota</i<, <i<Glycine max</i<, <i<Oryza sativa</i<, <i<Solanum lycopersicum</i<, <i<Sphagnum fallax</i<, and <i<Vitis vinifera</i<), representing diverse taxonomic groups of the Plant Kingdom. A Hidden Markov Model (HMM) profile of the MAPK genes utilized reference sequences from <i<A. thaliana</i< and <i<G. max</i<, yielding a total of 96 MPKs and 37 MKKs in the genomes of <i<A. trichopoda</i<, <i<A. coerulea</i<, <i<C. reinhardtii</i<, <i<D. carota</i<, <i<H. annuus</i<, <i<S. lycopersicum</i<, and <i<S. fallax</i<. Among them, 28 MPKs and eight MKKs were confirmed in <i<H. annuus</i<. Phylogenetic analyses revealed four clades within each subfamily. Transcriptomic analyses showed that at least 19 HaMPK and seven HaMKK genes were induced in response to salicylic acid (SA), sodium chloride (NaCl), and polyethylene glycol (Peg) in leaves and roots. Of the seven published sunflower microRNAs, five microRNA families are involved in targeting eight MPKs. Additionally, we discussed the need for using MAP Kinase nomenclature guidelines across plant species. Our identification and characterization of MAP Kinase genes would have implications in sunflower crop improvement, and in advancing our knowledge of the diversity and evolution of MAPK genes in the Plant Kingdom. Abiotic stress cellular signaling protein kinase MAPK cascade MAPK nomenclature sunflower RNA-seq Botany Sarah E. Schweitzer verfasserin aut Achal Neupane verfasserin aut Ethan J. Andersen verfasserin aut Anne Fennell verfasserin aut Ruanbao Zhou verfasserin aut Madhav P. Nepal verfasserin aut In Plants MDPI AG, 2013 8(2019), 2, p 28 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:8 year:2019 number:2, p 28 https://doi.org/10.3390/plants8020028 kostenfrei https://doaj.org/article/cb4235760b8941dfbe38d03c5a22d8fb kostenfrei https://www.mdpi.com/2223-7747/8/2/28 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2019 2, p 28
allfieldsGer	10.3390/plants8020028 doi (DE-627)DOAJ08611591X (DE-599)DOAJcb4235760b8941dfbe38d03c5a22d8fb DE-627 ger DE-627 rakwb eng QK1-989 Surendra Neupane verfasserin aut Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.) 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome-wide identification of MAPK genes in <i<Helianthus annuus</i< and examine functional divergence of these genes in relation to those in nine other plant species (<i<Amborella trichopoda</i<, <i<Aquilegia coerulea</i<, <i<Arabidopsis thaliana</i<, <i<Daucus carota</i<, <i<Glycine max</i<, <i<Oryza sativa</i<, <i<Solanum lycopersicum</i<, <i<Sphagnum fallax</i<, and <i<Vitis vinifera</i<), representing diverse taxonomic groups of the Plant Kingdom. A Hidden Markov Model (HMM) profile of the MAPK genes utilized reference sequences from <i<A. thaliana</i< and <i<G. max</i<, yielding a total of 96 MPKs and 37 MKKs in the genomes of <i<A. trichopoda</i<, <i<A. coerulea</i<, <i<C. reinhardtii</i<, <i<D. carota</i<, <i<H. annuus</i<, <i<S. lycopersicum</i<, and <i<S. fallax</i<. Among them, 28 MPKs and eight MKKs were confirmed in <i<H. annuus</i<. Phylogenetic analyses revealed four clades within each subfamily. Transcriptomic analyses showed that at least 19 HaMPK and seven HaMKK genes were induced in response to salicylic acid (SA), sodium chloride (NaCl), and polyethylene glycol (Peg) in leaves and roots. Of the seven published sunflower microRNAs, five microRNA families are involved in targeting eight MPKs. Additionally, we discussed the need for using MAP Kinase nomenclature guidelines across plant species. Our identification and characterization of MAP Kinase genes would have implications in sunflower crop improvement, and in advancing our knowledge of the diversity and evolution of MAPK genes in the Plant Kingdom. Abiotic stress cellular signaling protein kinase MAPK cascade MAPK nomenclature sunflower RNA-seq Botany Sarah E. Schweitzer verfasserin aut Achal Neupane verfasserin aut Ethan J. Andersen verfasserin aut Anne Fennell verfasserin aut Ruanbao Zhou verfasserin aut Madhav P. Nepal verfasserin aut In Plants MDPI AG, 2013 8(2019), 2, p 28 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:8 year:2019 number:2, p 28 https://doi.org/10.3390/plants8020028 kostenfrei https://doaj.org/article/cb4235760b8941dfbe38d03c5a22d8fb kostenfrei https://www.mdpi.com/2223-7747/8/2/28 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2019 2, p 28
allfieldsSound	10.3390/plants8020028 doi (DE-627)DOAJ08611591X (DE-599)DOAJcb4235760b8941dfbe38d03c5a22d8fb DE-627 ger DE-627 rakwb eng QK1-989 Surendra Neupane verfasserin aut Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.) 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome-wide identification of MAPK genes in <i<Helianthus annuus</i< and examine functional divergence of these genes in relation to those in nine other plant species (<i<Amborella trichopoda</i<, <i<Aquilegia coerulea</i<, <i<Arabidopsis thaliana</i<, <i<Daucus carota</i<, <i<Glycine max</i<, <i<Oryza sativa</i<, <i<Solanum lycopersicum</i<, <i<Sphagnum fallax</i<, and <i<Vitis vinifera</i<), representing diverse taxonomic groups of the Plant Kingdom. A Hidden Markov Model (HMM) profile of the MAPK genes utilized reference sequences from <i<A. thaliana</i< and <i<G. max</i<, yielding a total of 96 MPKs and 37 MKKs in the genomes of <i<A. trichopoda</i<, <i<A. coerulea</i<, <i<C. reinhardtii</i<, <i<D. carota</i<, <i<H. annuus</i<, <i<S. lycopersicum</i<, and <i<S. fallax</i<. Among them, 28 MPKs and eight MKKs were confirmed in <i<H. annuus</i<. Phylogenetic analyses revealed four clades within each subfamily. Transcriptomic analyses showed that at least 19 HaMPK and seven HaMKK genes were induced in response to salicylic acid (SA), sodium chloride (NaCl), and polyethylene glycol (Peg) in leaves and roots. Of the seven published sunflower microRNAs, five microRNA families are involved in targeting eight MPKs. Additionally, we discussed the need for using MAP Kinase nomenclature guidelines across plant species. Our identification and characterization of MAP Kinase genes would have implications in sunflower crop improvement, and in advancing our knowledge of the diversity and evolution of MAPK genes in the Plant Kingdom. Abiotic stress cellular signaling protein kinase MAPK cascade MAPK nomenclature sunflower RNA-seq Botany Sarah E. Schweitzer verfasserin aut Achal Neupane verfasserin aut Ethan J. Andersen verfasserin aut Anne Fennell verfasserin aut Ruanbao Zhou verfasserin aut Madhav P. Nepal verfasserin aut In Plants MDPI AG, 2013 8(2019), 2, p 28 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:8 year:2019 number:2, p 28 https://doi.org/10.3390/plants8020028 kostenfrei https://doaj.org/article/cb4235760b8941dfbe38d03c5a22d8fb kostenfrei https://www.mdpi.com/2223-7747/8/2/28 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2019 2, p 28
language	English
source	In Plants 8(2019), 2, p 28 volume:8 year:2019 number:2, p 28
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topic_facet	Abiotic stress cellular signaling protein kinase MAPK cascade MAPK nomenclature sunflower RNA-seq Botany
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authorswithroles_txt_mv	Surendra Neupane @@aut@@ Sarah E. Schweitzer @@aut@@ Achal Neupane @@aut@@ Ethan J. Andersen @@aut@@ Anne Fennell @@aut@@ Ruanbao Zhou @@aut@@ Madhav P. Nepal @@aut@@
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topic_title	QK1-989 Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.) Abiotic stress cellular signaling protein kinase MAPK cascade MAPK nomenclature sunflower RNA-seq
topic	misc QK1-989 misc Abiotic stress misc cellular signaling misc protein kinase misc MAPK cascade misc MAPK nomenclature misc sunflower misc RNA-seq misc Botany
topic_unstemmed	misc QK1-989 misc Abiotic stress misc cellular signaling misc protein kinase misc MAPK cascade misc MAPK nomenclature misc sunflower misc RNA-seq misc Botany
topic_browse	misc QK1-989 misc Abiotic stress misc cellular signaling misc protein kinase misc MAPK cascade misc MAPK nomenclature misc sunflower misc RNA-seq misc Botany
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title	Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.)
ctrlnum	(DE-627)DOAJ08611591X (DE-599)DOAJcb4235760b8941dfbe38d03c5a22d8fb
title_full	Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.)
author_sort	Surendra Neupane
journal	Plants
journalStr	Plants
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author_browse	Surendra Neupane Sarah E. Schweitzer Achal Neupane Ethan J. Andersen Anne Fennell Ruanbao Zhou Madhav P. Nepal
container_volume	8
class	QK1-989
format_se	Elektronische Aufsätze
author-letter	Surendra Neupane
doi_str_mv	10.3390/plants8020028
author2-role	verfasserin
title_sort	identification and characterization of mitogen-activated protein kinase (mapk) genes in sunflower (<i<helianthus annuus</i< l.)
callnumber	QK1-989
title_auth	Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.)
abstract	Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome-wide identification of MAPK genes in <i<Helianthus annuus</i< and examine functional divergence of these genes in relation to those in nine other plant species (<i<Amborella trichopoda</i<, <i<Aquilegia coerulea</i<, <i<Arabidopsis thaliana</i<, <i<Daucus carota</i<, <i<Glycine max</i<, <i<Oryza sativa</i<, <i<Solanum lycopersicum</i<, <i<Sphagnum fallax</i<, and <i<Vitis vinifera</i<), representing diverse taxonomic groups of the Plant Kingdom. A Hidden Markov Model (HMM) profile of the MAPK genes utilized reference sequences from <i<A. thaliana</i< and <i<G. max</i<, yielding a total of 96 MPKs and 37 MKKs in the genomes of <i<A. trichopoda</i<, <i<A. coerulea</i<, <i<C. reinhardtii</i<, <i<D. carota</i<, <i<H. annuus</i<, <i<S. lycopersicum</i<, and <i<S. fallax</i<. Among them, 28 MPKs and eight MKKs were confirmed in <i<H. annuus</i<. Phylogenetic analyses revealed four clades within each subfamily. Transcriptomic analyses showed that at least 19 HaMPK and seven HaMKK genes were induced in response to salicylic acid (SA), sodium chloride (NaCl), and polyethylene glycol (Peg) in leaves and roots. Of the seven published sunflower microRNAs, five microRNA families are involved in targeting eight MPKs. Additionally, we discussed the need for using MAP Kinase nomenclature guidelines across plant species. Our identification and characterization of MAP Kinase genes would have implications in sunflower crop improvement, and in advancing our knowledge of the diversity and evolution of MAPK genes in the Plant Kingdom.
abstractGer	Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome-wide identification of MAPK genes in <i<Helianthus annuus</i< and examine functional divergence of these genes in relation to those in nine other plant species (<i<Amborella trichopoda</i<, <i<Aquilegia coerulea</i<, <i<Arabidopsis thaliana</i<, <i<Daucus carota</i<, <i<Glycine max</i<, <i<Oryza sativa</i<, <i<Solanum lycopersicum</i<, <i<Sphagnum fallax</i<, and <i<Vitis vinifera</i<), representing diverse taxonomic groups of the Plant Kingdom. A Hidden Markov Model (HMM) profile of the MAPK genes utilized reference sequences from <i<A. thaliana</i< and <i<G. max</i<, yielding a total of 96 MPKs and 37 MKKs in the genomes of <i<A. trichopoda</i<, <i<A. coerulea</i<, <i<C. reinhardtii</i<, <i<D. carota</i<, <i<H. annuus</i<, <i<S. lycopersicum</i<, and <i<S. fallax</i<. Among them, 28 MPKs and eight MKKs were confirmed in <i<H. annuus</i<. Phylogenetic analyses revealed four clades within each subfamily. Transcriptomic analyses showed that at least 19 HaMPK and seven HaMKK genes were induced in response to salicylic acid (SA), sodium chloride (NaCl), and polyethylene glycol (Peg) in leaves and roots. Of the seven published sunflower microRNAs, five microRNA families are involved in targeting eight MPKs. Additionally, we discussed the need for using MAP Kinase nomenclature guidelines across plant species. Our identification and characterization of MAP Kinase genes would have implications in sunflower crop improvement, and in advancing our knowledge of the diversity and evolution of MAPK genes in the Plant Kingdom.
abstract_unstemmed	Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three major subfamilies: MAP Kinase (MPK), MAPK Kinase (MKK), and MAPKK Kinase (MKKK). The main objectives of this research were to conduct genome-wide identification of MAPK genes in <i<Helianthus annuus</i< and examine functional divergence of these genes in relation to those in nine other plant species (<i<Amborella trichopoda</i<, <i<Aquilegia coerulea</i<, <i<Arabidopsis thaliana</i<, <i<Daucus carota</i<, <i<Glycine max</i<, <i<Oryza sativa</i<, <i<Solanum lycopersicum</i<, <i<Sphagnum fallax</i<, and <i<Vitis vinifera</i<), representing diverse taxonomic groups of the Plant Kingdom. A Hidden Markov Model (HMM) profile of the MAPK genes utilized reference sequences from <i<A. thaliana</i< and <i<G. max</i<, yielding a total of 96 MPKs and 37 MKKs in the genomes of <i<A. trichopoda</i<, <i<A. coerulea</i<, <i<C. reinhardtii</i<, <i<D. carota</i<, <i<H. annuus</i<, <i<S. lycopersicum</i<, and <i<S. fallax</i<. Among them, 28 MPKs and eight MKKs were confirmed in <i<H. annuus</i<. Phylogenetic analyses revealed four clades within each subfamily. Transcriptomic analyses showed that at least 19 HaMPK and seven HaMKK genes were induced in response to salicylic acid (SA), sodium chloride (NaCl), and polyethylene glycol (Peg) in leaves and roots. Of the seven published sunflower microRNAs, five microRNA families are involved in targeting eight MPKs. Additionally, we discussed the need for using MAP Kinase nomenclature guidelines across plant species. Our identification and characterization of MAP Kinase genes would have implications in sunflower crop improvement, and in advancing our knowledge of the diversity and evolution of MAPK genes in the Plant Kingdom.
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title_short	Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (<i<Helianthus annuus</i< L.)
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author2	Sarah E. Schweitzer Achal Neupane Ethan J. Andersen Anne Fennell Ruanbao Zhou Madhav P. Nepal
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