Two major chromosome evolution events with unrivaled conserved gene content in pomegranate

Pomegranate has a unique evolutionary history given that different cultivars have eight or nine bivalent chromosomes with possible crossability between the two classes. Therefore, it is important to study chromosome evolution in pomegranate to understand the dynamics of its population. Here, we de n...
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Autor*in:	Zeynal Akparov [verfasserIn] Sabina Hajiyeva [verfasserIn] Mehraj Abbasov [verfasserIn] Sukhjiwan Kaur [verfasserIn] Aladdin Hamwieh [verfasserIn] Alsamman M. Alsamman [verfasserIn] Elchin Hajiyev [verfasserIn] Sevda Babayeva [verfasserIn] Vusala Izzatullayeva [verfasserIn] Ziyafat Mustafayeva [verfasserIn] Sabina Mehdiyeva [verfasserIn] Orkhan Mustafayev [verfasserIn] Ilham Shahmuradov [verfasserIn] Peter Kosarev [verfasserIn] Victor Solovyev [verfasserIn] Asaf Salamov [verfasserIn] Abdulqader Jighly [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	chromosome evolution evolution genomics pan-genome pomegranate

Übergeordnetes Werk:	In: Frontiers in Plant Science - Frontiers Media S.A., 2011, 14(2023)
Übergeordnetes Werk:	volume:14 ; year:2023

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3389/fpls.2023.1039211

Katalog-ID:	DOAJ087905183

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allfields	10.3389/fpls.2023.1039211 doi (DE-627)DOAJ087905183 (DE-599)DOAJf2f172f250264684affbba25cb5f1231 DE-627 ger DE-627 rakwb eng SB1-1110 Zeynal Akparov verfasserin aut Two major chromosome evolution events with unrivaled conserved gene content in pomegranate 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Pomegranate has a unique evolutionary history given that different cultivars have eight or nine bivalent chromosomes with possible crossability between the two classes. Therefore, it is important to study chromosome evolution in pomegranate to understand the dynamics of its population. Here, we de novo assembled the Azerbaijani cultivar “Azerbaijan guloyshasi” (AG2017; 2n = 16) and re-sequenced six cultivars to track the evolution of pomegranate and to compare it with previously published de novo assembled and re-sequenced cultivars. High synteny was observed between AG2017, Bhagawa (2n = 16), Tunisia (2n = 16), and Dabenzi (2n = 18), but these four cultivars diverged from the cultivar Taishanhong (2n = 18) with several rearrangements indicating the presence of two major chromosome evolution events. Major presence/absence variations were not observed as >99% of the five genomes aligned across the cultivars, while >99% of the pan-genic content was represented by Tunisia and Taishanhong only. We also revisited the divergence between soft- and hard-seeded cultivars with less structured population genomic data, compared to previous studies, to refine the selected genomic regions and detect global migration routes for pomegranate. We reported a unique admixture between soft- and hard-seeded cultivars that can be exploited to improve the diversity, quality, and adaptability of local pomegranate varieties around the world. Our study adds body knowledge to understanding the evolution of the pomegranate genome and its implications for the population structure of global pomegranate diversity, as well as planning breeding programs aiming to develop improved cultivars. chromosome evolution evolution genomics pan-genome pomegranate Plant culture Sabina Hajiyeva verfasserin aut Mehraj Abbasov verfasserin aut Mehraj Abbasov verfasserin aut Sukhjiwan Kaur verfasserin aut Aladdin Hamwieh verfasserin aut Alsamman M. Alsamman verfasserin aut Elchin Hajiyev verfasserin aut Sevda Babayeva verfasserin aut Vusala Izzatullayeva verfasserin aut Ziyafat Mustafayeva verfasserin aut Sabina Mehdiyeva verfasserin aut Orkhan Mustafayev verfasserin aut Ilham Shahmuradov verfasserin aut Ilham Shahmuradov verfasserin aut Peter Kosarev verfasserin aut Victor Solovyev verfasserin aut Asaf Salamov verfasserin aut Asaf Salamov verfasserin aut Abdulqader Jighly verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2023) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2023 https://doi.org/10.3389/fpls.2023.1039211 kostenfrei https://doaj.org/article/f2f172f250264684affbba25cb5f1231 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1039211/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023
spelling	10.3389/fpls.2023.1039211 doi (DE-627)DOAJ087905183 (DE-599)DOAJf2f172f250264684affbba25cb5f1231 DE-627 ger DE-627 rakwb eng SB1-1110 Zeynal Akparov verfasserin aut Two major chromosome evolution events with unrivaled conserved gene content in pomegranate 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Pomegranate has a unique evolutionary history given that different cultivars have eight or nine bivalent chromosomes with possible crossability between the two classes. Therefore, it is important to study chromosome evolution in pomegranate to understand the dynamics of its population. Here, we de novo assembled the Azerbaijani cultivar “Azerbaijan guloyshasi” (AG2017; 2n = 16) and re-sequenced six cultivars to track the evolution of pomegranate and to compare it with previously published de novo assembled and re-sequenced cultivars. High synteny was observed between AG2017, Bhagawa (2n = 16), Tunisia (2n = 16), and Dabenzi (2n = 18), but these four cultivars diverged from the cultivar Taishanhong (2n = 18) with several rearrangements indicating the presence of two major chromosome evolution events. Major presence/absence variations were not observed as >99% of the five genomes aligned across the cultivars, while >99% of the pan-genic content was represented by Tunisia and Taishanhong only. We also revisited the divergence between soft- and hard-seeded cultivars with less structured population genomic data, compared to previous studies, to refine the selected genomic regions and detect global migration routes for pomegranate. We reported a unique admixture between soft- and hard-seeded cultivars that can be exploited to improve the diversity, quality, and adaptability of local pomegranate varieties around the world. Our study adds body knowledge to understanding the evolution of the pomegranate genome and its implications for the population structure of global pomegranate diversity, as well as planning breeding programs aiming to develop improved cultivars. chromosome evolution evolution genomics pan-genome pomegranate Plant culture Sabina Hajiyeva verfasserin aut Mehraj Abbasov verfasserin aut Mehraj Abbasov verfasserin aut Sukhjiwan Kaur verfasserin aut Aladdin Hamwieh verfasserin aut Alsamman M. Alsamman verfasserin aut Elchin Hajiyev verfasserin aut Sevda Babayeva verfasserin aut Vusala Izzatullayeva verfasserin aut Ziyafat Mustafayeva verfasserin aut Sabina Mehdiyeva verfasserin aut Orkhan Mustafayev verfasserin aut Ilham Shahmuradov verfasserin aut Ilham Shahmuradov verfasserin aut Peter Kosarev verfasserin aut Victor Solovyev verfasserin aut Asaf Salamov verfasserin aut Asaf Salamov verfasserin aut Abdulqader Jighly verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2023) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2023 https://doi.org/10.3389/fpls.2023.1039211 kostenfrei https://doaj.org/article/f2f172f250264684affbba25cb5f1231 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1039211/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023
allfields_unstemmed	10.3389/fpls.2023.1039211 doi (DE-627)DOAJ087905183 (DE-599)DOAJf2f172f250264684affbba25cb5f1231 DE-627 ger DE-627 rakwb eng SB1-1110 Zeynal Akparov verfasserin aut Two major chromosome evolution events with unrivaled conserved gene content in pomegranate 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Pomegranate has a unique evolutionary history given that different cultivars have eight or nine bivalent chromosomes with possible crossability between the two classes. Therefore, it is important to study chromosome evolution in pomegranate to understand the dynamics of its population. Here, we de novo assembled the Azerbaijani cultivar “Azerbaijan guloyshasi” (AG2017; 2n = 16) and re-sequenced six cultivars to track the evolution of pomegranate and to compare it with previously published de novo assembled and re-sequenced cultivars. High synteny was observed between AG2017, Bhagawa (2n = 16), Tunisia (2n = 16), and Dabenzi (2n = 18), but these four cultivars diverged from the cultivar Taishanhong (2n = 18) with several rearrangements indicating the presence of two major chromosome evolution events. Major presence/absence variations were not observed as >99% of the five genomes aligned across the cultivars, while >99% of the pan-genic content was represented by Tunisia and Taishanhong only. We also revisited the divergence between soft- and hard-seeded cultivars with less structured population genomic data, compared to previous studies, to refine the selected genomic regions and detect global migration routes for pomegranate. We reported a unique admixture between soft- and hard-seeded cultivars that can be exploited to improve the diversity, quality, and adaptability of local pomegranate varieties around the world. Our study adds body knowledge to understanding the evolution of the pomegranate genome and its implications for the population structure of global pomegranate diversity, as well as planning breeding programs aiming to develop improved cultivars. chromosome evolution evolution genomics pan-genome pomegranate Plant culture Sabina Hajiyeva verfasserin aut Mehraj Abbasov verfasserin aut Mehraj Abbasov verfasserin aut Sukhjiwan Kaur verfasserin aut Aladdin Hamwieh verfasserin aut Alsamman M. Alsamman verfasserin aut Elchin Hajiyev verfasserin aut Sevda Babayeva verfasserin aut Vusala Izzatullayeva verfasserin aut Ziyafat Mustafayeva verfasserin aut Sabina Mehdiyeva verfasserin aut Orkhan Mustafayev verfasserin aut Ilham Shahmuradov verfasserin aut Ilham Shahmuradov verfasserin aut Peter Kosarev verfasserin aut Victor Solovyev verfasserin aut Asaf Salamov verfasserin aut Asaf Salamov verfasserin aut Abdulqader Jighly verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2023) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2023 https://doi.org/10.3389/fpls.2023.1039211 kostenfrei https://doaj.org/article/f2f172f250264684affbba25cb5f1231 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1039211/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023
allfieldsGer	10.3389/fpls.2023.1039211 doi (DE-627)DOAJ087905183 (DE-599)DOAJf2f172f250264684affbba25cb5f1231 DE-627 ger DE-627 rakwb eng SB1-1110 Zeynal Akparov verfasserin aut Two major chromosome evolution events with unrivaled conserved gene content in pomegranate 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Pomegranate has a unique evolutionary history given that different cultivars have eight or nine bivalent chromosomes with possible crossability between the two classes. Therefore, it is important to study chromosome evolution in pomegranate to understand the dynamics of its population. Here, we de novo assembled the Azerbaijani cultivar “Azerbaijan guloyshasi” (AG2017; 2n = 16) and re-sequenced six cultivars to track the evolution of pomegranate and to compare it with previously published de novo assembled and re-sequenced cultivars. High synteny was observed between AG2017, Bhagawa (2n = 16), Tunisia (2n = 16), and Dabenzi (2n = 18), but these four cultivars diverged from the cultivar Taishanhong (2n = 18) with several rearrangements indicating the presence of two major chromosome evolution events. Major presence/absence variations were not observed as >99% of the five genomes aligned across the cultivars, while >99% of the pan-genic content was represented by Tunisia and Taishanhong only. We also revisited the divergence between soft- and hard-seeded cultivars with less structured population genomic data, compared to previous studies, to refine the selected genomic regions and detect global migration routes for pomegranate. We reported a unique admixture between soft- and hard-seeded cultivars that can be exploited to improve the diversity, quality, and adaptability of local pomegranate varieties around the world. Our study adds body knowledge to understanding the evolution of the pomegranate genome and its implications for the population structure of global pomegranate diversity, as well as planning breeding programs aiming to develop improved cultivars. chromosome evolution evolution genomics pan-genome pomegranate Plant culture Sabina Hajiyeva verfasserin aut Mehraj Abbasov verfasserin aut Mehraj Abbasov verfasserin aut Sukhjiwan Kaur verfasserin aut Aladdin Hamwieh verfasserin aut Alsamman M. Alsamman verfasserin aut Elchin Hajiyev verfasserin aut Sevda Babayeva verfasserin aut Vusala Izzatullayeva verfasserin aut Ziyafat Mustafayeva verfasserin aut Sabina Mehdiyeva verfasserin aut Orkhan Mustafayev verfasserin aut Ilham Shahmuradov verfasserin aut Ilham Shahmuradov verfasserin aut Peter Kosarev verfasserin aut Victor Solovyev verfasserin aut Asaf Salamov verfasserin aut Asaf Salamov verfasserin aut Abdulqader Jighly verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2023) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2023 https://doi.org/10.3389/fpls.2023.1039211 kostenfrei https://doaj.org/article/f2f172f250264684affbba25cb5f1231 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1039211/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023
allfieldsSound	10.3389/fpls.2023.1039211 doi (DE-627)DOAJ087905183 (DE-599)DOAJf2f172f250264684affbba25cb5f1231 DE-627 ger DE-627 rakwb eng SB1-1110 Zeynal Akparov verfasserin aut Two major chromosome evolution events with unrivaled conserved gene content in pomegranate 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Pomegranate has a unique evolutionary history given that different cultivars have eight or nine bivalent chromosomes with possible crossability between the two classes. Therefore, it is important to study chromosome evolution in pomegranate to understand the dynamics of its population. Here, we de novo assembled the Azerbaijani cultivar “Azerbaijan guloyshasi” (AG2017; 2n = 16) and re-sequenced six cultivars to track the evolution of pomegranate and to compare it with previously published de novo assembled and re-sequenced cultivars. High synteny was observed between AG2017, Bhagawa (2n = 16), Tunisia (2n = 16), and Dabenzi (2n = 18), but these four cultivars diverged from the cultivar Taishanhong (2n = 18) with several rearrangements indicating the presence of two major chromosome evolution events. Major presence/absence variations were not observed as >99% of the five genomes aligned across the cultivars, while >99% of the pan-genic content was represented by Tunisia and Taishanhong only. We also revisited the divergence between soft- and hard-seeded cultivars with less structured population genomic data, compared to previous studies, to refine the selected genomic regions and detect global migration routes for pomegranate. We reported a unique admixture between soft- and hard-seeded cultivars that can be exploited to improve the diversity, quality, and adaptability of local pomegranate varieties around the world. Our study adds body knowledge to understanding the evolution of the pomegranate genome and its implications for the population structure of global pomegranate diversity, as well as planning breeding programs aiming to develop improved cultivars. chromosome evolution evolution genomics pan-genome pomegranate Plant culture Sabina Hajiyeva verfasserin aut Mehraj Abbasov verfasserin aut Mehraj Abbasov verfasserin aut Sukhjiwan Kaur verfasserin aut Aladdin Hamwieh verfasserin aut Alsamman M. Alsamman verfasserin aut Elchin Hajiyev verfasserin aut Sevda Babayeva verfasserin aut Vusala Izzatullayeva verfasserin aut Ziyafat Mustafayeva verfasserin aut Sabina Mehdiyeva verfasserin aut Orkhan Mustafayev verfasserin aut Ilham Shahmuradov verfasserin aut Ilham Shahmuradov verfasserin aut Peter Kosarev verfasserin aut Victor Solovyev verfasserin aut Asaf Salamov verfasserin aut Asaf Salamov verfasserin aut Abdulqader Jighly verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2023) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2023 https://doi.org/10.3389/fpls.2023.1039211 kostenfrei https://doaj.org/article/f2f172f250264684affbba25cb5f1231 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1039211/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023
language	English
source	In Frontiers in Plant Science 14(2023) volume:14 year:2023
sourceStr	In Frontiers in Plant Science 14(2023) volume:14 year:2023
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	chromosome evolution evolution genomics pan-genome pomegranate Plant culture
isfreeaccess_bool	true
container_title	Frontiers in Plant Science
authorswithroles_txt_mv	Zeynal Akparov @@aut@@ Sabina Hajiyeva @@aut@@ Mehraj Abbasov @@aut@@ Sukhjiwan Kaur @@aut@@ Aladdin Hamwieh @@aut@@ Alsamman M. Alsamman @@aut@@ Elchin Hajiyev @@aut@@ Sevda Babayeva @@aut@@ Vusala Izzatullayeva @@aut@@ Ziyafat Mustafayeva @@aut@@ Sabina Mehdiyeva @@aut@@ Orkhan Mustafayev @@aut@@ Ilham Shahmuradov @@aut@@ Peter Kosarev @@aut@@ Victor Solovyev @@aut@@ Asaf Salamov @@aut@@ Abdulqader Jighly @@aut@@
publishDateDaySort_date	2023-01-01T00:00:00Z
hierarchy_top_id	662359240
id	DOAJ087905183
language_de	englisch
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callnumber-first	S - Agriculture
author	Zeynal Akparov
spellingShingle	Zeynal Akparov misc SB1-1110 misc chromosome evolution misc evolution misc genomics misc pan-genome misc pomegranate misc Plant culture Two major chromosome evolution events with unrivaled conserved gene content in pomegranate
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topic_title	SB1-1110 Two major chromosome evolution events with unrivaled conserved gene content in pomegranate chromosome evolution evolution genomics pan-genome pomegranate
topic	misc SB1-1110 misc chromosome evolution misc evolution misc genomics misc pan-genome misc pomegranate misc Plant culture
topic_unstemmed	misc SB1-1110 misc chromosome evolution misc evolution misc genomics misc pan-genome misc pomegranate misc Plant culture
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title	Two major chromosome evolution events with unrivaled conserved gene content in pomegranate
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title_full	Two major chromosome evolution events with unrivaled conserved gene content in pomegranate
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author_browse	Zeynal Akparov Sabina Hajiyeva Mehraj Abbasov Sukhjiwan Kaur Aladdin Hamwieh Alsamman M. Alsamman Elchin Hajiyev Sevda Babayeva Vusala Izzatullayeva Ziyafat Mustafayeva Sabina Mehdiyeva Orkhan Mustafayev Ilham Shahmuradov Peter Kosarev Victor Solovyev Asaf Salamov Abdulqader Jighly
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title_sort	two major chromosome evolution events with unrivaled conserved gene content in pomegranate
callnumber	SB1-1110
title_auth	Two major chromosome evolution events with unrivaled conserved gene content in pomegranate
abstract	Pomegranate has a unique evolutionary history given that different cultivars have eight or nine bivalent chromosomes with possible crossability between the two classes. Therefore, it is important to study chromosome evolution in pomegranate to understand the dynamics of its population. Here, we de novo assembled the Azerbaijani cultivar “Azerbaijan guloyshasi” (AG2017; 2n = 16) and re-sequenced six cultivars to track the evolution of pomegranate and to compare it with previously published de novo assembled and re-sequenced cultivars. High synteny was observed between AG2017, Bhagawa (2n = 16), Tunisia (2n = 16), and Dabenzi (2n = 18), but these four cultivars diverged from the cultivar Taishanhong (2n = 18) with several rearrangements indicating the presence of two major chromosome evolution events. Major presence/absence variations were not observed as >99% of the five genomes aligned across the cultivars, while >99% of the pan-genic content was represented by Tunisia and Taishanhong only. We also revisited the divergence between soft- and hard-seeded cultivars with less structured population genomic data, compared to previous studies, to refine the selected genomic regions and detect global migration routes for pomegranate. We reported a unique admixture between soft- and hard-seeded cultivars that can be exploited to improve the diversity, quality, and adaptability of local pomegranate varieties around the world. Our study adds body knowledge to understanding the evolution of the pomegranate genome and its implications for the population structure of global pomegranate diversity, as well as planning breeding programs aiming to develop improved cultivars.
abstractGer	Pomegranate has a unique evolutionary history given that different cultivars have eight or nine bivalent chromosomes with possible crossability between the two classes. Therefore, it is important to study chromosome evolution in pomegranate to understand the dynamics of its population. Here, we de novo assembled the Azerbaijani cultivar “Azerbaijan guloyshasi” (AG2017; 2n = 16) and re-sequenced six cultivars to track the evolution of pomegranate and to compare it with previously published de novo assembled and re-sequenced cultivars. High synteny was observed between AG2017, Bhagawa (2n = 16), Tunisia (2n = 16), and Dabenzi (2n = 18), but these four cultivars diverged from the cultivar Taishanhong (2n = 18) with several rearrangements indicating the presence of two major chromosome evolution events. Major presence/absence variations were not observed as >99% of the five genomes aligned across the cultivars, while >99% of the pan-genic content was represented by Tunisia and Taishanhong only. We also revisited the divergence between soft- and hard-seeded cultivars with less structured population genomic data, compared to previous studies, to refine the selected genomic regions and detect global migration routes for pomegranate. We reported a unique admixture between soft- and hard-seeded cultivars that can be exploited to improve the diversity, quality, and adaptability of local pomegranate varieties around the world. Our study adds body knowledge to understanding the evolution of the pomegranate genome and its implications for the population structure of global pomegranate diversity, as well as planning breeding programs aiming to develop improved cultivars.
abstract_unstemmed	Pomegranate has a unique evolutionary history given that different cultivars have eight or nine bivalent chromosomes with possible crossability between the two classes. Therefore, it is important to study chromosome evolution in pomegranate to understand the dynamics of its population. Here, we de novo assembled the Azerbaijani cultivar “Azerbaijan guloyshasi” (AG2017; 2n = 16) and re-sequenced six cultivars to track the evolution of pomegranate and to compare it with previously published de novo assembled and re-sequenced cultivars. High synteny was observed between AG2017, Bhagawa (2n = 16), Tunisia (2n = 16), and Dabenzi (2n = 18), but these four cultivars diverged from the cultivar Taishanhong (2n = 18) with several rearrangements indicating the presence of two major chromosome evolution events. Major presence/absence variations were not observed as >99% of the five genomes aligned across the cultivars, while >99% of the pan-genic content was represented by Tunisia and Taishanhong only. We also revisited the divergence between soft- and hard-seeded cultivars with less structured population genomic data, compared to previous studies, to refine the selected genomic regions and detect global migration routes for pomegranate. We reported a unique admixture between soft- and hard-seeded cultivars that can be exploited to improve the diversity, quality, and adaptability of local pomegranate varieties around the world. Our study adds body knowledge to understanding the evolution of the pomegranate genome and its implications for the population structure of global pomegranate diversity, as well as planning breeding programs aiming to develop improved cultivars.
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title_short	Two major chromosome evolution events with unrivaled conserved gene content in pomegranate
url	https://doi.org/10.3389/fpls.2023.1039211 https://doaj.org/article/f2f172f250264684affbba25cb5f1231 https://www.frontiersin.org/articles/10.3389/fpls.2023.1039211/full https://doaj.org/toc/1664-462X
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author2	Sabina Hajiyeva Mehraj Abbasov Sukhjiwan Kaur Aladdin Hamwieh Alsamman M. Alsamman Elchin Hajiyev Sevda Babayeva Vusala Izzatullayeva Ziyafat Mustafayeva Sabina Mehdiyeva Orkhan Mustafayev Ilham Shahmuradov Peter Kosarev Victor Solovyev Asaf Salamov Abdulqader Jighly
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Two major chromosome evolution events with unrivaled conserved gene content in pomegranate

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