Metabolic network reconstruction of Euglena gracilis: Current state, challenges, and applications

A metabolic model, representing all biochemical reactions in a cell, is a prerequisite for several approaches in systems biology used to explore the metabolic phenotype of an organism. Despite the use of Euglena in diverse industrial applications and as a biological model, there is limited understan...
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Autor*in:	Sahutchai Inwongwan [verfasserIn] Jeeraporn Pekkoh [verfasserIn] Chayakorn Pumas [verfasserIn] Pachara Sattayawat [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	metabolic network reconstruction genome-scale metabolic model metabolic network modelling metabolic flux analysis Euglena gracilis

Übergeordnetes Werk:	In: Frontiers in Microbiology - Frontiers Media S.A., 2011, 14(2023)
Übergeordnetes Werk:	volume:14 ; year:2023

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3389/fmicb.2023.1143770

Katalog-ID:	DOAJ088353133

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spelling	10.3389/fmicb.2023.1143770 doi (DE-627)DOAJ088353133 (DE-599)DOAJecfa1aaffe424d9c8adca8b17ce2ff19 DE-627 ger DE-627 rakwb eng QR1-502 Sahutchai Inwongwan verfasserin aut Metabolic network reconstruction of Euglena gracilis: Current state, challenges, and applications 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier A metabolic model, representing all biochemical reactions in a cell, is a prerequisite for several approaches in systems biology used to explore the metabolic phenotype of an organism. Despite the use of Euglena in diverse industrial applications and as a biological model, there is limited understanding of its metabolic network capacity. The unavailability of the completed genome data and the highly complex evolution of Euglena are significant obstacles to the reconstruction and analysis of its genome-scale metabolic model. In this mini-review, we discuss the current state and challenges of metabolic network reconstruction in Euglena gracilis. We have collated and present the available relevant data for the metabolic network reconstruction of E. gracilis, which could be used to improve the quality of the metabolic model of E. gracilis. Furthermore, we deliver the potential applications of the model in metabolic engineering. Altogether, it is supposed that this mini-review would facilitate the investigation of metabolic networks in Euglena and further lay out a direction for model-assisted metabolic engineering. metabolic network reconstruction genome-scale metabolic model metabolic network modelling metabolic flux analysis Euglena gracilis Microbiology Sahutchai Inwongwan verfasserin aut Jeeraporn Pekkoh verfasserin aut Jeeraporn Pekkoh verfasserin aut Chayakorn Pumas verfasserin aut Chayakorn Pumas verfasserin aut Pachara Sattayawat verfasserin aut Pachara Sattayawat verfasserin aut Pachara Sattayawat verfasserin aut In Frontiers in Microbiology Frontiers Media S.A., 2011 14(2023) (DE-627)642889384 (DE-600)2587354-4 1664302X nnns volume:14 year:2023 https://doi.org/10.3389/fmicb.2023.1143770 kostenfrei https://doaj.org/article/ecfa1aaffe424d9c8adca8b17ce2ff19 kostenfrei https://www.frontiersin.org/articles/10.3389/fmicb.2023.1143770/full kostenfrei https://doaj.org/toc/1664-302X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023
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allfieldsGer	10.3389/fmicb.2023.1143770 doi (DE-627)DOAJ088353133 (DE-599)DOAJecfa1aaffe424d9c8adca8b17ce2ff19 DE-627 ger DE-627 rakwb eng QR1-502 Sahutchai Inwongwan verfasserin aut Metabolic network reconstruction of Euglena gracilis: Current state, challenges, and applications 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier A metabolic model, representing all biochemical reactions in a cell, is a prerequisite for several approaches in systems biology used to explore the metabolic phenotype of an organism. Despite the use of Euglena in diverse industrial applications and as a biological model, there is limited understanding of its metabolic network capacity. The unavailability of the completed genome data and the highly complex evolution of Euglena are significant obstacles to the reconstruction and analysis of its genome-scale metabolic model. In this mini-review, we discuss the current state and challenges of metabolic network reconstruction in Euglena gracilis. We have collated and present the available relevant data for the metabolic network reconstruction of E. gracilis, which could be used to improve the quality of the metabolic model of E. gracilis. Furthermore, we deliver the potential applications of the model in metabolic engineering. Altogether, it is supposed that this mini-review would facilitate the investigation of metabolic networks in Euglena and further lay out a direction for model-assisted metabolic engineering. metabolic network reconstruction genome-scale metabolic model metabolic network modelling metabolic flux analysis Euglena gracilis Microbiology Sahutchai Inwongwan verfasserin aut Jeeraporn Pekkoh verfasserin aut Jeeraporn Pekkoh verfasserin aut Chayakorn Pumas verfasserin aut Chayakorn Pumas verfasserin aut Pachara Sattayawat verfasserin aut Pachara Sattayawat verfasserin aut Pachara Sattayawat verfasserin aut In Frontiers in Microbiology Frontiers Media S.A., 2011 14(2023) (DE-627)642889384 (DE-600)2587354-4 1664302X nnns volume:14 year:2023 https://doi.org/10.3389/fmicb.2023.1143770 kostenfrei https://doaj.org/article/ecfa1aaffe424d9c8adca8b17ce2ff19 kostenfrei https://www.frontiersin.org/articles/10.3389/fmicb.2023.1143770/full kostenfrei https://doaj.org/toc/1664-302X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023
allfieldsSound	10.3389/fmicb.2023.1143770 doi (DE-627)DOAJ088353133 (DE-599)DOAJecfa1aaffe424d9c8adca8b17ce2ff19 DE-627 ger DE-627 rakwb eng QR1-502 Sahutchai Inwongwan verfasserin aut Metabolic network reconstruction of Euglena gracilis: Current state, challenges, and applications 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier A metabolic model, representing all biochemical reactions in a cell, is a prerequisite for several approaches in systems biology used to explore the metabolic phenotype of an organism. Despite the use of Euglena in diverse industrial applications and as a biological model, there is limited understanding of its metabolic network capacity. The unavailability of the completed genome data and the highly complex evolution of Euglena are significant obstacles to the reconstruction and analysis of its genome-scale metabolic model. In this mini-review, we discuss the current state and challenges of metabolic network reconstruction in Euglena gracilis. We have collated and present the available relevant data for the metabolic network reconstruction of E. gracilis, which could be used to improve the quality of the metabolic model of E. gracilis. Furthermore, we deliver the potential applications of the model in metabolic engineering. Altogether, it is supposed that this mini-review would facilitate the investigation of metabolic networks in Euglena and further lay out a direction for model-assisted metabolic engineering. metabolic network reconstruction genome-scale metabolic model metabolic network modelling metabolic flux analysis Euglena gracilis Microbiology Sahutchai Inwongwan verfasserin aut Jeeraporn Pekkoh verfasserin aut Jeeraporn Pekkoh verfasserin aut Chayakorn Pumas verfasserin aut Chayakorn Pumas verfasserin aut Pachara Sattayawat verfasserin aut Pachara Sattayawat verfasserin aut Pachara Sattayawat verfasserin aut In Frontiers in Microbiology Frontiers Media S.A., 2011 14(2023) (DE-627)642889384 (DE-600)2587354-4 1664302X nnns volume:14 year:2023 https://doi.org/10.3389/fmicb.2023.1143770 kostenfrei https://doaj.org/article/ecfa1aaffe424d9c8adca8b17ce2ff19 kostenfrei https://www.frontiersin.org/articles/10.3389/fmicb.2023.1143770/full kostenfrei https://doaj.org/toc/1664-302X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023
language	English
source	In Frontiers in Microbiology 14(2023) volume:14 year:2023
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topic_facet	metabolic network reconstruction genome-scale metabolic model metabolic network modelling metabolic flux analysis Euglena gracilis Microbiology
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container_title	Frontiers in Microbiology
authorswithroles_txt_mv	Sahutchai Inwongwan @@aut@@ Jeeraporn Pekkoh @@aut@@ Chayakorn Pumas @@aut@@ Pachara Sattayawat @@aut@@
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author	Sahutchai Inwongwan
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topic_title	QR1-502 Metabolic network reconstruction of Euglena gracilis: Current state, challenges, and applications metabolic network reconstruction genome-scale metabolic model metabolic network modelling metabolic flux analysis Euglena gracilis
topic	misc QR1-502 misc metabolic network reconstruction misc genome-scale metabolic model misc metabolic network modelling misc metabolic flux analysis misc Euglena gracilis misc Microbiology
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title	Metabolic network reconstruction of Euglena gracilis: Current state, challenges, and applications
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title_sort	metabolic network reconstruction of euglena gracilis: current state, challenges, and applications
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title_auth	Metabolic network reconstruction of Euglena gracilis: Current state, challenges, and applications
abstract	A metabolic model, representing all biochemical reactions in a cell, is a prerequisite for several approaches in systems biology used to explore the metabolic phenotype of an organism. Despite the use of Euglena in diverse industrial applications and as a biological model, there is limited understanding of its metabolic network capacity. The unavailability of the completed genome data and the highly complex evolution of Euglena are significant obstacles to the reconstruction and analysis of its genome-scale metabolic model. In this mini-review, we discuss the current state and challenges of metabolic network reconstruction in Euglena gracilis. We have collated and present the available relevant data for the metabolic network reconstruction of E. gracilis, which could be used to improve the quality of the metabolic model of E. gracilis. Furthermore, we deliver the potential applications of the model in metabolic engineering. Altogether, it is supposed that this mini-review would facilitate the investigation of metabolic networks in Euglena and further lay out a direction for model-assisted metabolic engineering.
abstractGer	A metabolic model, representing all biochemical reactions in a cell, is a prerequisite for several approaches in systems biology used to explore the metabolic phenotype of an organism. Despite the use of Euglena in diverse industrial applications and as a biological model, there is limited understanding of its metabolic network capacity. The unavailability of the completed genome data and the highly complex evolution of Euglena are significant obstacles to the reconstruction and analysis of its genome-scale metabolic model. In this mini-review, we discuss the current state and challenges of metabolic network reconstruction in Euglena gracilis. We have collated and present the available relevant data for the metabolic network reconstruction of E. gracilis, which could be used to improve the quality of the metabolic model of E. gracilis. Furthermore, we deliver the potential applications of the model in metabolic engineering. Altogether, it is supposed that this mini-review would facilitate the investigation of metabolic networks in Euglena and further lay out a direction for model-assisted metabolic engineering.
abstract_unstemmed	A metabolic model, representing all biochemical reactions in a cell, is a prerequisite for several approaches in systems biology used to explore the metabolic phenotype of an organism. Despite the use of Euglena in diverse industrial applications and as a biological model, there is limited understanding of its metabolic network capacity. The unavailability of the completed genome data and the highly complex evolution of Euglena are significant obstacles to the reconstruction and analysis of its genome-scale metabolic model. In this mini-review, we discuss the current state and challenges of metabolic network reconstruction in Euglena gracilis. We have collated and present the available relevant data for the metabolic network reconstruction of E. gracilis, which could be used to improve the quality of the metabolic model of E. gracilis. Furthermore, we deliver the potential applications of the model in metabolic engineering. Altogether, it is supposed that this mini-review would facilitate the investigation of metabolic networks in Euglena and further lay out a direction for model-assisted metabolic engineering.
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title_short	Metabolic network reconstruction of Euglena gracilis: Current state, challenges, and applications
url	https://doi.org/10.3389/fmicb.2023.1143770 https://doaj.org/article/ecfa1aaffe424d9c8adca8b17ce2ff19 https://www.frontiersin.org/articles/10.3389/fmicb.2023.1143770/full https://doaj.org/toc/1664-302X
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