Evolution of <i<piggyBac</i< Transposons in Apoidea

In this study, we investigated the presence of <i<piggyBac</i< (<i<PB</i<) transposons in 44 bee genomes from the Apoidea order, which is a superfamily within the Hymenoptera, which includes a large number of bee species crucial for pollination. We annotated the <i<PB&l...
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Autor*in:	Xueyuan Li [verfasserIn] Zhongxia Guan [verfasserIn] Feng Wang [verfasserIn] Yali Wang [verfasserIn] Emmanuel Asare [verfasserIn] Shasha Shi [verfasserIn] Zheguang Lin [verfasserIn] Ting Ji [verfasserIn] Bo Gao [verfasserIn] Chengyi Song [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	Apoidea transposons evolution

Übergeordnetes Werk:	In: Insects - MDPI AG, 2011, 14(2023), 4, p 402
Übergeordnetes Werk:	volume:14 ; year:2023 ; number:4, p 402

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/insects14040402

Katalog-ID:	DOAJ089838467

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allfields	10.3390/insects14040402 doi (DE-627)DOAJ089838467 (DE-599)DOAJ0789a14a86fe423a80d88612dd3e09d2 DE-627 ger DE-627 rakwb eng Xueyuan Li verfasserin aut Evolution of <i<piggyBac</i< Transposons in Apoidea 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier In this study, we investigated the presence of <i<piggyBac</i< (<i<PB</i<) transposons in 44 bee genomes from the Apoidea order, which is a superfamily within the Hymenoptera, which includes a large number of bee species crucial for pollination. We annotated the <i<PB</i< transposons in these 44 bee genomes and examined their evolution profiles, including structural characteristics, distribution, diversity, activity, and abundance. The mined <i<PB</i< transposons were divided into three clades, with uneven distribution in each genus of <i<PB</i< transposons in Apoidea. The complete <i<PB</i< transposons we discovered are around 2.23–3.52 kb in length and encode transposases of approximately 580 aa, with terminal inverted repeats (TIRs) of about 14 bp and 4 bp (TTAA) target-site duplications. Long TIRs (200 bp, 201 bp, and 493 bp) were also detected in some species of bees. The DDD domains of the three transposon types were more conserved, while the other protein domains were less conserved. Generally, most <i<PB</i< transposons showed low abundance in the genomes of Apoidea. Divergent evolution dynamics of <i<PB</i< were observed in the genomes of Apoidea. <i<PB</i< transposons in some identified species were relatively young, whiles others were older and with some either active or inactive. In addition, multiple invasions of <i<PB</i< were also detected in some genomes of Apoidea. Our findings highlight the contribution of <i<PB</i< transposons to genomic variation in these species and suggest their potential as candidates for future gene transfer tools. Apoidea <i<piggyBac</i< transposons evolution Science Q Zhongxia Guan verfasserin aut Feng Wang verfasserin aut Yali Wang verfasserin aut Emmanuel Asare verfasserin aut Shasha Shi verfasserin aut Zheguang Lin verfasserin aut Ting Ji verfasserin aut Bo Gao verfasserin aut Chengyi Song verfasserin aut In Insects MDPI AG, 2011 14(2023), 4, p 402 (DE-627)718627121 (DE-600)2662247-6 20754450 nnns volume:14 year:2023 number:4, p 402 https://doi.org/10.3390/insects14040402 kostenfrei https://doaj.org/article/0789a14a86fe423a80d88612dd3e09d2 kostenfrei https://www.mdpi.com/2075-4450/14/4/402 kostenfrei https://doaj.org/toc/2075-4450 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 4, p 402
spelling	10.3390/insects14040402 doi (DE-627)DOAJ089838467 (DE-599)DOAJ0789a14a86fe423a80d88612dd3e09d2 DE-627 ger DE-627 rakwb eng Xueyuan Li verfasserin aut Evolution of <i<piggyBac</i< Transposons in Apoidea 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier In this study, we investigated the presence of <i<piggyBac</i< (<i<PB</i<) transposons in 44 bee genomes from the Apoidea order, which is a superfamily within the Hymenoptera, which includes a large number of bee species crucial for pollination. We annotated the <i<PB</i< transposons in these 44 bee genomes and examined their evolution profiles, including structural characteristics, distribution, diversity, activity, and abundance. The mined <i<PB</i< transposons were divided into three clades, with uneven distribution in each genus of <i<PB</i< transposons in Apoidea. The complete <i<PB</i< transposons we discovered are around 2.23–3.52 kb in length and encode transposases of approximately 580 aa, with terminal inverted repeats (TIRs) of about 14 bp and 4 bp (TTAA) target-site duplications. Long TIRs (200 bp, 201 bp, and 493 bp) were also detected in some species of bees. The DDD domains of the three transposon types were more conserved, while the other protein domains were less conserved. Generally, most <i<PB</i< transposons showed low abundance in the genomes of Apoidea. Divergent evolution dynamics of <i<PB</i< were observed in the genomes of Apoidea. <i<PB</i< transposons in some identified species were relatively young, whiles others were older and with some either active or inactive. In addition, multiple invasions of <i<PB</i< were also detected in some genomes of Apoidea. Our findings highlight the contribution of <i<PB</i< transposons to genomic variation in these species and suggest their potential as candidates for future gene transfer tools. Apoidea <i<piggyBac</i< transposons evolution Science Q Zhongxia Guan verfasserin aut Feng Wang verfasserin aut Yali Wang verfasserin aut Emmanuel Asare verfasserin aut Shasha Shi verfasserin aut Zheguang Lin verfasserin aut Ting Ji verfasserin aut Bo Gao verfasserin aut Chengyi Song verfasserin aut In Insects MDPI AG, 2011 14(2023), 4, p 402 (DE-627)718627121 (DE-600)2662247-6 20754450 nnns volume:14 year:2023 number:4, p 402 https://doi.org/10.3390/insects14040402 kostenfrei https://doaj.org/article/0789a14a86fe423a80d88612dd3e09d2 kostenfrei https://www.mdpi.com/2075-4450/14/4/402 kostenfrei https://doaj.org/toc/2075-4450 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 4, p 402
allfields_unstemmed	10.3390/insects14040402 doi (DE-627)DOAJ089838467 (DE-599)DOAJ0789a14a86fe423a80d88612dd3e09d2 DE-627 ger DE-627 rakwb eng Xueyuan Li verfasserin aut Evolution of <i<piggyBac</i< Transposons in Apoidea 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier In this study, we investigated the presence of <i<piggyBac</i< (<i<PB</i<) transposons in 44 bee genomes from the Apoidea order, which is a superfamily within the Hymenoptera, which includes a large number of bee species crucial for pollination. We annotated the <i<PB</i< transposons in these 44 bee genomes and examined their evolution profiles, including structural characteristics, distribution, diversity, activity, and abundance. The mined <i<PB</i< transposons were divided into three clades, with uneven distribution in each genus of <i<PB</i< transposons in Apoidea. The complete <i<PB</i< transposons we discovered are around 2.23–3.52 kb in length and encode transposases of approximately 580 aa, with terminal inverted repeats (TIRs) of about 14 bp and 4 bp (TTAA) target-site duplications. Long TIRs (200 bp, 201 bp, and 493 bp) were also detected in some species of bees. The DDD domains of the three transposon types were more conserved, while the other protein domains were less conserved. Generally, most <i<PB</i< transposons showed low abundance in the genomes of Apoidea. Divergent evolution dynamics of <i<PB</i< were observed in the genomes of Apoidea. <i<PB</i< transposons in some identified species were relatively young, whiles others were older and with some either active or inactive. In addition, multiple invasions of <i<PB</i< were also detected in some genomes of Apoidea. Our findings highlight the contribution of <i<PB</i< transposons to genomic variation in these species and suggest their potential as candidates for future gene transfer tools. Apoidea <i<piggyBac</i< transposons evolution Science Q Zhongxia Guan verfasserin aut Feng Wang verfasserin aut Yali Wang verfasserin aut Emmanuel Asare verfasserin aut Shasha Shi verfasserin aut Zheguang Lin verfasserin aut Ting Ji verfasserin aut Bo Gao verfasserin aut Chengyi Song verfasserin aut In Insects MDPI AG, 2011 14(2023), 4, p 402 (DE-627)718627121 (DE-600)2662247-6 20754450 nnns volume:14 year:2023 number:4, p 402 https://doi.org/10.3390/insects14040402 kostenfrei https://doaj.org/article/0789a14a86fe423a80d88612dd3e09d2 kostenfrei https://www.mdpi.com/2075-4450/14/4/402 kostenfrei https://doaj.org/toc/2075-4450 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 4, p 402
allfieldsGer	10.3390/insects14040402 doi (DE-627)DOAJ089838467 (DE-599)DOAJ0789a14a86fe423a80d88612dd3e09d2 DE-627 ger DE-627 rakwb eng Xueyuan Li verfasserin aut Evolution of <i<piggyBac</i< Transposons in Apoidea 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier In this study, we investigated the presence of <i<piggyBac</i< (<i<PB</i<) transposons in 44 bee genomes from the Apoidea order, which is a superfamily within the Hymenoptera, which includes a large number of bee species crucial for pollination. We annotated the <i<PB</i< transposons in these 44 bee genomes and examined their evolution profiles, including structural characteristics, distribution, diversity, activity, and abundance. The mined <i<PB</i< transposons were divided into three clades, with uneven distribution in each genus of <i<PB</i< transposons in Apoidea. The complete <i<PB</i< transposons we discovered are around 2.23–3.52 kb in length and encode transposases of approximately 580 aa, with terminal inverted repeats (TIRs) of about 14 bp and 4 bp (TTAA) target-site duplications. Long TIRs (200 bp, 201 bp, and 493 bp) were also detected in some species of bees. The DDD domains of the three transposon types were more conserved, while the other protein domains were less conserved. Generally, most <i<PB</i< transposons showed low abundance in the genomes of Apoidea. Divergent evolution dynamics of <i<PB</i< were observed in the genomes of Apoidea. <i<PB</i< transposons in some identified species were relatively young, whiles others were older and with some either active or inactive. In addition, multiple invasions of <i<PB</i< were also detected in some genomes of Apoidea. Our findings highlight the contribution of <i<PB</i< transposons to genomic variation in these species and suggest their potential as candidates for future gene transfer tools. Apoidea <i<piggyBac</i< transposons evolution Science Q Zhongxia Guan verfasserin aut Feng Wang verfasserin aut Yali Wang verfasserin aut Emmanuel Asare verfasserin aut Shasha Shi verfasserin aut Zheguang Lin verfasserin aut Ting Ji verfasserin aut Bo Gao verfasserin aut Chengyi Song verfasserin aut In Insects MDPI AG, 2011 14(2023), 4, p 402 (DE-627)718627121 (DE-600)2662247-6 20754450 nnns volume:14 year:2023 number:4, p 402 https://doi.org/10.3390/insects14040402 kostenfrei https://doaj.org/article/0789a14a86fe423a80d88612dd3e09d2 kostenfrei https://www.mdpi.com/2075-4450/14/4/402 kostenfrei https://doaj.org/toc/2075-4450 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 4, p 402
allfieldsSound	10.3390/insects14040402 doi (DE-627)DOAJ089838467 (DE-599)DOAJ0789a14a86fe423a80d88612dd3e09d2 DE-627 ger DE-627 rakwb eng Xueyuan Li verfasserin aut Evolution of <i<piggyBac</i< Transposons in Apoidea 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier In this study, we investigated the presence of <i<piggyBac</i< (<i<PB</i<) transposons in 44 bee genomes from the Apoidea order, which is a superfamily within the Hymenoptera, which includes a large number of bee species crucial for pollination. We annotated the <i<PB</i< transposons in these 44 bee genomes and examined their evolution profiles, including structural characteristics, distribution, diversity, activity, and abundance. The mined <i<PB</i< transposons were divided into three clades, with uneven distribution in each genus of <i<PB</i< transposons in Apoidea. The complete <i<PB</i< transposons we discovered are around 2.23–3.52 kb in length and encode transposases of approximately 580 aa, with terminal inverted repeats (TIRs) of about 14 bp and 4 bp (TTAA) target-site duplications. Long TIRs (200 bp, 201 bp, and 493 bp) were also detected in some species of bees. The DDD domains of the three transposon types were more conserved, while the other protein domains were less conserved. Generally, most <i<PB</i< transposons showed low abundance in the genomes of Apoidea. Divergent evolution dynamics of <i<PB</i< were observed in the genomes of Apoidea. <i<PB</i< transposons in some identified species were relatively young, whiles others were older and with some either active or inactive. In addition, multiple invasions of <i<PB</i< were also detected in some genomes of Apoidea. Our findings highlight the contribution of <i<PB</i< transposons to genomic variation in these species and suggest their potential as candidates for future gene transfer tools. Apoidea <i<piggyBac</i< transposons evolution Science Q Zhongxia Guan verfasserin aut Feng Wang verfasserin aut Yali Wang verfasserin aut Emmanuel Asare verfasserin aut Shasha Shi verfasserin aut Zheguang Lin verfasserin aut Ting Ji verfasserin aut Bo Gao verfasserin aut Chengyi Song verfasserin aut In Insects MDPI AG, 2011 14(2023), 4, p 402 (DE-627)718627121 (DE-600)2662247-6 20754450 nnns volume:14 year:2023 number:4, p 402 https://doi.org/10.3390/insects14040402 kostenfrei https://doaj.org/article/0789a14a86fe423a80d88612dd3e09d2 kostenfrei https://www.mdpi.com/2075-4450/14/4/402 kostenfrei https://doaj.org/toc/2075-4450 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 4, p 402
language	English
source	In Insects 14(2023), 4, p 402 volume:14 year:2023 number:4, p 402
sourceStr	In Insects 14(2023), 4, p 402 volume:14 year:2023 number:4, p 402
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Apoidea <i<piggyBac</i< transposons evolution Science Q
isfreeaccess_bool	true
container_title	Insects
authorswithroles_txt_mv	Xueyuan Li @@aut@@ Zhongxia Guan @@aut@@ Feng Wang @@aut@@ Yali Wang @@aut@@ Emmanuel Asare @@aut@@ Shasha Shi @@aut@@ Zheguang Lin @@aut@@ Ting Ji @@aut@@ Bo Gao @@aut@@ Chengyi Song @@aut@@
publishDateDaySort_date	2023-01-01T00:00:00Z
hierarchy_top_id	718627121
id	DOAJ089838467
language_de	englisch
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author	Xueyuan Li
spellingShingle	Xueyuan Li misc Apoidea misc <i<piggyBac</i< misc transposons misc evolution misc Science misc Q Evolution of <i<piggyBac</i< Transposons in Apoidea
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topic_title	Evolution of <i<piggyBac</i< Transposons in Apoidea Apoidea <i<piggyBac</i< transposons evolution
topic	misc Apoidea misc <i<piggyBac</i< misc transposons misc evolution misc Science misc Q
topic_unstemmed	misc Apoidea misc <i<piggyBac</i< misc transposons misc evolution misc Science misc Q
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title	Evolution of <i<piggyBac</i< Transposons in Apoidea
ctrlnum	(DE-627)DOAJ089838467 (DE-599)DOAJ0789a14a86fe423a80d88612dd3e09d2
title_full	Evolution of <i<piggyBac</i< Transposons in Apoidea
author_sort	Xueyuan Li
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author_browse	Xueyuan Li Zhongxia Guan Feng Wang Yali Wang Emmanuel Asare Shasha Shi Zheguang Lin Ting Ji Bo Gao Chengyi Song
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format_se	Elektronische Aufsätze
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title_sort	evolution of <i<piggybac</i< transposons in apoidea
title_auth	Evolution of <i<piggyBac</i< Transposons in Apoidea
abstract	In this study, we investigated the presence of <i<piggyBac</i< (<i<PB</i<) transposons in 44 bee genomes from the Apoidea order, which is a superfamily within the Hymenoptera, which includes a large number of bee species crucial for pollination. We annotated the <i<PB</i< transposons in these 44 bee genomes and examined their evolution profiles, including structural characteristics, distribution, diversity, activity, and abundance. The mined <i<PB</i< transposons were divided into three clades, with uneven distribution in each genus of <i<PB</i< transposons in Apoidea. The complete <i<PB</i< transposons we discovered are around 2.23–3.52 kb in length and encode transposases of approximately 580 aa, with terminal inverted repeats (TIRs) of about 14 bp and 4 bp (TTAA) target-site duplications. Long TIRs (200 bp, 201 bp, and 493 bp) were also detected in some species of bees. The DDD domains of the three transposon types were more conserved, while the other protein domains were less conserved. Generally, most <i<PB</i< transposons showed low abundance in the genomes of Apoidea. Divergent evolution dynamics of <i<PB</i< were observed in the genomes of Apoidea. <i<PB</i< transposons in some identified species were relatively young, whiles others were older and with some either active or inactive. In addition, multiple invasions of <i<PB</i< were also detected in some genomes of Apoidea. Our findings highlight the contribution of <i<PB</i< transposons to genomic variation in these species and suggest their potential as candidates for future gene transfer tools.
abstractGer	In this study, we investigated the presence of <i<piggyBac</i< (<i<PB</i<) transposons in 44 bee genomes from the Apoidea order, which is a superfamily within the Hymenoptera, which includes a large number of bee species crucial for pollination. We annotated the <i<PB</i< transposons in these 44 bee genomes and examined their evolution profiles, including structural characteristics, distribution, diversity, activity, and abundance. The mined <i<PB</i< transposons were divided into three clades, with uneven distribution in each genus of <i<PB</i< transposons in Apoidea. The complete <i<PB</i< transposons we discovered are around 2.23–3.52 kb in length and encode transposases of approximately 580 aa, with terminal inverted repeats (TIRs) of about 14 bp and 4 bp (TTAA) target-site duplications. Long TIRs (200 bp, 201 bp, and 493 bp) were also detected in some species of bees. The DDD domains of the three transposon types were more conserved, while the other protein domains were less conserved. Generally, most <i<PB</i< transposons showed low abundance in the genomes of Apoidea. Divergent evolution dynamics of <i<PB</i< were observed in the genomes of Apoidea. <i<PB</i< transposons in some identified species were relatively young, whiles others were older and with some either active or inactive. In addition, multiple invasions of <i<PB</i< were also detected in some genomes of Apoidea. Our findings highlight the contribution of <i<PB</i< transposons to genomic variation in these species and suggest their potential as candidates for future gene transfer tools.
abstract_unstemmed	In this study, we investigated the presence of <i<piggyBac</i< (<i<PB</i<) transposons in 44 bee genomes from the Apoidea order, which is a superfamily within the Hymenoptera, which includes a large number of bee species crucial for pollination. We annotated the <i<PB</i< transposons in these 44 bee genomes and examined their evolution profiles, including structural characteristics, distribution, diversity, activity, and abundance. The mined <i<PB</i< transposons were divided into three clades, with uneven distribution in each genus of <i<PB</i< transposons in Apoidea. The complete <i<PB</i< transposons we discovered are around 2.23–3.52 kb in length and encode transposases of approximately 580 aa, with terminal inverted repeats (TIRs) of about 14 bp and 4 bp (TTAA) target-site duplications. Long TIRs (200 bp, 201 bp, and 493 bp) were also detected in some species of bees. The DDD domains of the three transposon types were more conserved, while the other protein domains were less conserved. Generally, most <i<PB</i< transposons showed low abundance in the genomes of Apoidea. Divergent evolution dynamics of <i<PB</i< were observed in the genomes of Apoidea. <i<PB</i< transposons in some identified species were relatively young, whiles others were older and with some either active or inactive. In addition, multiple invasions of <i<PB</i< were also detected in some genomes of Apoidea. Our findings highlight the contribution of <i<PB</i< transposons to genomic variation in these species and suggest their potential as candidates for future gene transfer tools.
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container_issue	4, p 402
title_short	Evolution of <i<piggyBac</i< Transposons in Apoidea
url	https://doi.org/10.3390/insects14040402 https://doaj.org/article/0789a14a86fe423a80d88612dd3e09d2 https://www.mdpi.com/2075-4450/14/4/402 https://doaj.org/toc/2075-4450
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score	7.3984203

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Evolution of <i<piggyBac</i< Transposons in Apoidea

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