Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i<

<i<N<sup<6</sup<</i<-methyladenosine (m<sup<6</sup<A) is becoming one of the most important RNA modifications in plant growth and development, including defense, cell differentiation, and secondary metabolism. YT521-B homology (YTH) domain-containing RNA-binding p...
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Autor*in:	Sheng Yao [verfasserIn] Jingjing Zhang [verfasserIn] Xiang Cheng [verfasserIn] Dengbao Wang [verfasserIn] Wenya Yu [verfasserIn] Kongshu Ji [verfasserIn] Qiong Yu [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	RNA methylation m YTH domain expression profiling

Übergeordnetes Werk:	In: International Journal of Molecular Sciences - MDPI AG, 2003, 24(2023), 15189, p 15189
Übergeordnetes Werk:	volume:24 ; year:2023 ; number:15189, p 15189

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc Journal toc

DOI / URN:	10.3390/ijms242015189

Katalog-ID:	DOAJ093133081

Internformat


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allfields	10.3390/ijms242015189 doi (DE-627)DOAJ093133081 (DE-599)DOAJ1c949f4eef5e434ebede72076a8032f1 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Sheng Yao verfasserin aut Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <i<N<sup<6</sup<</i<-methyladenosine (m<sup<6</sup<A) is becoming one of the most important RNA modifications in plant growth and development, including defense, cell differentiation, and secondary metabolism. YT521-B homology (YTH) domain-containing RNA-binding proteins, identified as m<sup<6</sup<A readers in epitranscriptomics, could affect the fate of m<sup<6</sup<A-containing RNA by recognizing and binding the m<sup<6</sup<A site. Therefore, the identification and study of the YTH gene family in <i<Liriodendron chinense</i< (<i<L. chinense</i<) can provide a molecular basis for the study of the role of m<sup<6</sup<A in <i<L. chinense</i<, but studies on the <i<YTH</i< gene in <i<L. chinense</i< have not been reported. We identified nine putative <i<YTH</i< gene models in the <i<L. chinense</i< genome, which can be divided into DF subgroups and DC subgroups. Domain sequence analysis showed that the LcYTH protein had high sequence conservation. A LcYTH aromatic cage bag is composed of tryptophan and tryptophan (WWW). PrLDs were found in the protein results of YTH, suggesting that these genes may be involved in the process of liquid–liquid phase separation. <i<LcYTH</i< genes have different tissue expression patterns, but the expression of <i<LcYTHDF2</i< is absolutely dominant in all tissues. In addition, the expression of the <i<LcYTH</i< genes is changed in response to ABA and MeJA. In this study, We identified and analyzed the expression pattern of <i<LcYTH</i< genes. Our results laid a foundation for further study of the function of the <i<LcYTH</i< gene and further genetic and functional analyses of m<sup<6</sup<A RNA modification in forest trees. RNA methylation m<sup<6</sup<A <i<Liriodendron chinense</i< YTH domain expression profiling Biology (General) Chemistry Jingjing Zhang verfasserin aut Xiang Cheng verfasserin aut Dengbao Wang verfasserin aut Wenya Yu verfasserin aut Kongshu Ji verfasserin aut Qiong Yu verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 15189, p 15189 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:15189, p 15189 https://doi.org/10.3390/ijms242015189 kostenfrei https://doaj.org/article/1c949f4eef5e434ebede72076a8032f1 kostenfrei https://www.mdpi.com/1422-0067/24/20/15189 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 15189, p 15189
spelling	10.3390/ijms242015189 doi (DE-627)DOAJ093133081 (DE-599)DOAJ1c949f4eef5e434ebede72076a8032f1 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Sheng Yao verfasserin aut Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <i<N<sup<6</sup<</i<-methyladenosine (m<sup<6</sup<A) is becoming one of the most important RNA modifications in plant growth and development, including defense, cell differentiation, and secondary metabolism. YT521-B homology (YTH) domain-containing RNA-binding proteins, identified as m<sup<6</sup<A readers in epitranscriptomics, could affect the fate of m<sup<6</sup<A-containing RNA by recognizing and binding the m<sup<6</sup<A site. Therefore, the identification and study of the YTH gene family in <i<Liriodendron chinense</i< (<i<L. chinense</i<) can provide a molecular basis for the study of the role of m<sup<6</sup<A in <i<L. chinense</i<, but studies on the <i<YTH</i< gene in <i<L. chinense</i< have not been reported. We identified nine putative <i<YTH</i< gene models in the <i<L. chinense</i< genome, which can be divided into DF subgroups and DC subgroups. Domain sequence analysis showed that the LcYTH protein had high sequence conservation. A LcYTH aromatic cage bag is composed of tryptophan and tryptophan (WWW). PrLDs were found in the protein results of YTH, suggesting that these genes may be involved in the process of liquid–liquid phase separation. <i<LcYTH</i< genes have different tissue expression patterns, but the expression of <i<LcYTHDF2</i< is absolutely dominant in all tissues. In addition, the expression of the <i<LcYTH</i< genes is changed in response to ABA and MeJA. In this study, We identified and analyzed the expression pattern of <i<LcYTH</i< genes. Our results laid a foundation for further study of the function of the <i<LcYTH</i< gene and further genetic and functional analyses of m<sup<6</sup<A RNA modification in forest trees. RNA methylation m<sup<6</sup<A <i<Liriodendron chinense</i< YTH domain expression profiling Biology (General) Chemistry Jingjing Zhang verfasserin aut Xiang Cheng verfasserin aut Dengbao Wang verfasserin aut Wenya Yu verfasserin aut Kongshu Ji verfasserin aut Qiong Yu verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 15189, p 15189 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:15189, p 15189 https://doi.org/10.3390/ijms242015189 kostenfrei https://doaj.org/article/1c949f4eef5e434ebede72076a8032f1 kostenfrei https://www.mdpi.com/1422-0067/24/20/15189 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 15189, p 15189
allfields_unstemmed	10.3390/ijms242015189 doi (DE-627)DOAJ093133081 (DE-599)DOAJ1c949f4eef5e434ebede72076a8032f1 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Sheng Yao verfasserin aut Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <i<N<sup<6</sup<</i<-methyladenosine (m<sup<6</sup<A) is becoming one of the most important RNA modifications in plant growth and development, including defense, cell differentiation, and secondary metabolism. YT521-B homology (YTH) domain-containing RNA-binding proteins, identified as m<sup<6</sup<A readers in epitranscriptomics, could affect the fate of m<sup<6</sup<A-containing RNA by recognizing and binding the m<sup<6</sup<A site. Therefore, the identification and study of the YTH gene family in <i<Liriodendron chinense</i< (<i<L. chinense</i<) can provide a molecular basis for the study of the role of m<sup<6</sup<A in <i<L. chinense</i<, but studies on the <i<YTH</i< gene in <i<L. chinense</i< have not been reported. We identified nine putative <i<YTH</i< gene models in the <i<L. chinense</i< genome, which can be divided into DF subgroups and DC subgroups. Domain sequence analysis showed that the LcYTH protein had high sequence conservation. A LcYTH aromatic cage bag is composed of tryptophan and tryptophan (WWW). PrLDs were found in the protein results of YTH, suggesting that these genes may be involved in the process of liquid–liquid phase separation. <i<LcYTH</i< genes have different tissue expression patterns, but the expression of <i<LcYTHDF2</i< is absolutely dominant in all tissues. In addition, the expression of the <i<LcYTH</i< genes is changed in response to ABA and MeJA. In this study, We identified and analyzed the expression pattern of <i<LcYTH</i< genes. Our results laid a foundation for further study of the function of the <i<LcYTH</i< gene and further genetic and functional analyses of m<sup<6</sup<A RNA modification in forest trees. RNA methylation m<sup<6</sup<A <i<Liriodendron chinense</i< YTH domain expression profiling Biology (General) Chemistry Jingjing Zhang verfasserin aut Xiang Cheng verfasserin aut Dengbao Wang verfasserin aut Wenya Yu verfasserin aut Kongshu Ji verfasserin aut Qiong Yu verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 15189, p 15189 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:15189, p 15189 https://doi.org/10.3390/ijms242015189 kostenfrei https://doaj.org/article/1c949f4eef5e434ebede72076a8032f1 kostenfrei https://www.mdpi.com/1422-0067/24/20/15189 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 15189, p 15189
allfieldsGer	10.3390/ijms242015189 doi (DE-627)DOAJ093133081 (DE-599)DOAJ1c949f4eef5e434ebede72076a8032f1 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Sheng Yao verfasserin aut Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <i<N<sup<6</sup<</i<-methyladenosine (m<sup<6</sup<A) is becoming one of the most important RNA modifications in plant growth and development, including defense, cell differentiation, and secondary metabolism. YT521-B homology (YTH) domain-containing RNA-binding proteins, identified as m<sup<6</sup<A readers in epitranscriptomics, could affect the fate of m<sup<6</sup<A-containing RNA by recognizing and binding the m<sup<6</sup<A site. Therefore, the identification and study of the YTH gene family in <i<Liriodendron chinense</i< (<i<L. chinense</i<) can provide a molecular basis for the study of the role of m<sup<6</sup<A in <i<L. chinense</i<, but studies on the <i<YTH</i< gene in <i<L. chinense</i< have not been reported. We identified nine putative <i<YTH</i< gene models in the <i<L. chinense</i< genome, which can be divided into DF subgroups and DC subgroups. Domain sequence analysis showed that the LcYTH protein had high sequence conservation. A LcYTH aromatic cage bag is composed of tryptophan and tryptophan (WWW). PrLDs were found in the protein results of YTH, suggesting that these genes may be involved in the process of liquid–liquid phase separation. <i<LcYTH</i< genes have different tissue expression patterns, but the expression of <i<LcYTHDF2</i< is absolutely dominant in all tissues. In addition, the expression of the <i<LcYTH</i< genes is changed in response to ABA and MeJA. In this study, We identified and analyzed the expression pattern of <i<LcYTH</i< genes. Our results laid a foundation for further study of the function of the <i<LcYTH</i< gene and further genetic and functional analyses of m<sup<6</sup<A RNA modification in forest trees. RNA methylation m<sup<6</sup<A <i<Liriodendron chinense</i< YTH domain expression profiling Biology (General) Chemistry Jingjing Zhang verfasserin aut Xiang Cheng verfasserin aut Dengbao Wang verfasserin aut Wenya Yu verfasserin aut Kongshu Ji verfasserin aut Qiong Yu verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 15189, p 15189 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:15189, p 15189 https://doi.org/10.3390/ijms242015189 kostenfrei https://doaj.org/article/1c949f4eef5e434ebede72076a8032f1 kostenfrei https://www.mdpi.com/1422-0067/24/20/15189 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 15189, p 15189
allfieldsSound	10.3390/ijms242015189 doi (DE-627)DOAJ093133081 (DE-599)DOAJ1c949f4eef5e434ebede72076a8032f1 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Sheng Yao verfasserin aut Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <i<N<sup<6</sup<</i<-methyladenosine (m<sup<6</sup<A) is becoming one of the most important RNA modifications in plant growth and development, including defense, cell differentiation, and secondary metabolism. YT521-B homology (YTH) domain-containing RNA-binding proteins, identified as m<sup<6</sup<A readers in epitranscriptomics, could affect the fate of m<sup<6</sup<A-containing RNA by recognizing and binding the m<sup<6</sup<A site. Therefore, the identification and study of the YTH gene family in <i<Liriodendron chinense</i< (<i<L. chinense</i<) can provide a molecular basis for the study of the role of m<sup<6</sup<A in <i<L. chinense</i<, but studies on the <i<YTH</i< gene in <i<L. chinense</i< have not been reported. We identified nine putative <i<YTH</i< gene models in the <i<L. chinense</i< genome, which can be divided into DF subgroups and DC subgroups. Domain sequence analysis showed that the LcYTH protein had high sequence conservation. A LcYTH aromatic cage bag is composed of tryptophan and tryptophan (WWW). PrLDs were found in the protein results of YTH, suggesting that these genes may be involved in the process of liquid–liquid phase separation. <i<LcYTH</i< genes have different tissue expression patterns, but the expression of <i<LcYTHDF2</i< is absolutely dominant in all tissues. In addition, the expression of the <i<LcYTH</i< genes is changed in response to ABA and MeJA. In this study, We identified and analyzed the expression pattern of <i<LcYTH</i< genes. Our results laid a foundation for further study of the function of the <i<LcYTH</i< gene and further genetic and functional analyses of m<sup<6</sup<A RNA modification in forest trees. RNA methylation m<sup<6</sup<A <i<Liriodendron chinense</i< YTH domain expression profiling Biology (General) Chemistry Jingjing Zhang verfasserin aut Xiang Cheng verfasserin aut Dengbao Wang verfasserin aut Wenya Yu verfasserin aut Kongshu Ji verfasserin aut Qiong Yu verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 15189, p 15189 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:15189, p 15189 https://doi.org/10.3390/ijms242015189 kostenfrei https://doaj.org/article/1c949f4eef5e434ebede72076a8032f1 kostenfrei https://www.mdpi.com/1422-0067/24/20/15189 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 15189, p 15189
language	English
source	In International Journal of Molecular Sciences 24(2023), 15189, p 15189 volume:24 year:2023 number:15189, p 15189
sourceStr	In International Journal of Molecular Sciences 24(2023), 15189, p 15189 volume:24 year:2023 number:15189, p 15189
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	RNA methylation m<sup<6</sup<A <i<Liriodendron chinense</i< YTH domain expression profiling Biology (General) Chemistry
isfreeaccess_bool	true
container_title	International Journal of Molecular Sciences
authorswithroles_txt_mv	Sheng Yao @@aut@@ Jingjing Zhang @@aut@@ Xiang Cheng @@aut@@ Dengbao Wang @@aut@@ Wenya Yu @@aut@@ Kongshu Ji @@aut@@ Qiong Yu @@aut@@
publishDateDaySort_date	2023-01-01T00:00:00Z
hierarchy_top_id	316340715
id	DOAJ093133081
language_de	englisch
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callnumber-first	Q - Science
author	Sheng Yao
spellingShingle	Sheng Yao misc QH301-705.5 misc QD1-999 misc RNA methylation misc m<sup<6</sup<A misc <i<Liriodendron chinense</i< misc YTH domain misc expression profiling misc Biology (General) misc Chemistry Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i<
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topic_title	QH301-705.5 QD1-999 Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i< RNA methylation m<sup<6</sup<A <i<Liriodendron chinense</i< YTH domain expression profiling
topic	misc QH301-705.5 misc QD1-999 misc RNA methylation misc m<sup<6</sup<A misc <i<Liriodendron chinense</i< misc YTH domain misc expression profiling misc Biology (General) misc Chemistry
topic_unstemmed	misc QH301-705.5 misc QD1-999 misc RNA methylation misc m<sup<6</sup<A misc <i<Liriodendron chinense</i< misc YTH domain misc expression profiling misc Biology (General) misc Chemistry
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title	Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i<
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title_full	Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i<
author_sort	Sheng Yao
journal	International Journal of Molecular Sciences
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author_browse	Sheng Yao Jingjing Zhang Xiang Cheng Dengbao Wang Wenya Yu Kongshu Ji Qiong Yu
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format_se	Elektronische Aufsätze
author-letter	Sheng Yao
doi_str_mv	10.3390/ijms242015189
author2-role	verfasserin
title_sort	genome-wide identification and characterization of the yth domain-containing rna-binding protein family in <i<liriodendron chinense</i<
callnumber	QH301-705.5
title_auth	Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i<
abstract	<i<N<sup<6</sup<</i<-methyladenosine (m<sup<6</sup<A) is becoming one of the most important RNA modifications in plant growth and development, including defense, cell differentiation, and secondary metabolism. YT521-B homology (YTH) domain-containing RNA-binding proteins, identified as m<sup<6</sup<A readers in epitranscriptomics, could affect the fate of m<sup<6</sup<A-containing RNA by recognizing and binding the m<sup<6</sup<A site. Therefore, the identification and study of the YTH gene family in <i<Liriodendron chinense</i< (<i<L. chinense</i<) can provide a molecular basis for the study of the role of m<sup<6</sup<A in <i<L. chinense</i<, but studies on the <i<YTH</i< gene in <i<L. chinense</i< have not been reported. We identified nine putative <i<YTH</i< gene models in the <i<L. chinense</i< genome, which can be divided into DF subgroups and DC subgroups. Domain sequence analysis showed that the LcYTH protein had high sequence conservation. A LcYTH aromatic cage bag is composed of tryptophan and tryptophan (WWW). PrLDs were found in the protein results of YTH, suggesting that these genes may be involved in the process of liquid–liquid phase separation. <i<LcYTH</i< genes have different tissue expression patterns, but the expression of <i<LcYTHDF2</i< is absolutely dominant in all tissues. In addition, the expression of the <i<LcYTH</i< genes is changed in response to ABA and MeJA. In this study, We identified and analyzed the expression pattern of <i<LcYTH</i< genes. Our results laid a foundation for further study of the function of the <i<LcYTH</i< gene and further genetic and functional analyses of m<sup<6</sup<A RNA modification in forest trees.
abstractGer	<i<N<sup<6</sup<</i<-methyladenosine (m<sup<6</sup<A) is becoming one of the most important RNA modifications in plant growth and development, including defense, cell differentiation, and secondary metabolism. YT521-B homology (YTH) domain-containing RNA-binding proteins, identified as m<sup<6</sup<A readers in epitranscriptomics, could affect the fate of m<sup<6</sup<A-containing RNA by recognizing and binding the m<sup<6</sup<A site. Therefore, the identification and study of the YTH gene family in <i<Liriodendron chinense</i< (<i<L. chinense</i<) can provide a molecular basis for the study of the role of m<sup<6</sup<A in <i<L. chinense</i<, but studies on the <i<YTH</i< gene in <i<L. chinense</i< have not been reported. We identified nine putative <i<YTH</i< gene models in the <i<L. chinense</i< genome, which can be divided into DF subgroups and DC subgroups. Domain sequence analysis showed that the LcYTH protein had high sequence conservation. A LcYTH aromatic cage bag is composed of tryptophan and tryptophan (WWW). PrLDs were found in the protein results of YTH, suggesting that these genes may be involved in the process of liquid–liquid phase separation. <i<LcYTH</i< genes have different tissue expression patterns, but the expression of <i<LcYTHDF2</i< is absolutely dominant in all tissues. In addition, the expression of the <i<LcYTH</i< genes is changed in response to ABA and MeJA. In this study, We identified and analyzed the expression pattern of <i<LcYTH</i< genes. Our results laid a foundation for further study of the function of the <i<LcYTH</i< gene and further genetic and functional analyses of m<sup<6</sup<A RNA modification in forest trees.
abstract_unstemmed	<i<N<sup<6</sup<</i<-methyladenosine (m<sup<6</sup<A) is becoming one of the most important RNA modifications in plant growth and development, including defense, cell differentiation, and secondary metabolism. YT521-B homology (YTH) domain-containing RNA-binding proteins, identified as m<sup<6</sup<A readers in epitranscriptomics, could affect the fate of m<sup<6</sup<A-containing RNA by recognizing and binding the m<sup<6</sup<A site. Therefore, the identification and study of the YTH gene family in <i<Liriodendron chinense</i< (<i<L. chinense</i<) can provide a molecular basis for the study of the role of m<sup<6</sup<A in <i<L. chinense</i<, but studies on the <i<YTH</i< gene in <i<L. chinense</i< have not been reported. We identified nine putative <i<YTH</i< gene models in the <i<L. chinense</i< genome, which can be divided into DF subgroups and DC subgroups. Domain sequence analysis showed that the LcYTH protein had high sequence conservation. A LcYTH aromatic cage bag is composed of tryptophan and tryptophan (WWW). PrLDs were found in the protein results of YTH, suggesting that these genes may be involved in the process of liquid–liquid phase separation. <i<LcYTH</i< genes have different tissue expression patterns, but the expression of <i<LcYTHDF2</i< is absolutely dominant in all tissues. In addition, the expression of the <i<LcYTH</i< genes is changed in response to ABA and MeJA. In this study, We identified and analyzed the expression pattern of <i<LcYTH</i< genes. Our results laid a foundation for further study of the function of the <i<LcYTH</i< gene and further genetic and functional analyses of m<sup<6</sup<A RNA modification in forest trees.
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title_short	Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i<
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Genome-Wide Identification and Characterization of the YTH Domain-Containing RNA-Binding Protein Family in <i<Liriodendron chinense</i<

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