Small RNA-Seq to Unveil the miRNA Expression Patterns and Identify the Target Genes in <i<Panax ginseng</i<

<i<Panax ginseng</i<, renowned for its medicinal properties, relies on adventitious roots and hairy roots as crucial sources for the production of ginsenosides. Despite the widespread utilization of ginseng, investigations into its miRNAs have remained scarce. To address this gap, two sa...
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Autor*in:	Chang Liu [verfasserIn] Yang Jiang [verfasserIn] Ziyi Yun [verfasserIn] Kexin Zhang [verfasserIn] Mingzhu Zhao [verfasserIn] Yi Wang [verfasserIn] Meiping Zhang [verfasserIn] Zhuo Tian [verfasserIn] Kangyu Wang [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	miRNA target gene miR166 miR396

Übergeordnetes Werk:	In: Plants - MDPI AG, 2013, 12(2023), 17, p 3070
Übergeordnetes Werk:	volume:12 ; year:2023 ; number:17, p 3070

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/plants12173070

Katalog-ID:	DOAJ093494009

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allfieldsSound	10.3390/plants12173070 doi (DE-627)DOAJ093494009 (DE-599)DOAJ9b3ab9d29339420b86ab97a4e941b91a DE-627 ger DE-627 rakwb eng QK1-989 Chang Liu verfasserin aut Small RNA-Seq to Unveil the miRNA Expression Patterns and Identify the Target Genes in <i<Panax ginseng</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier <i<Panax ginseng</i<, renowned for its medicinal properties, relies on adventitious roots and hairy roots as crucial sources for the production of ginsenosides. Despite the widespread utilization of ginseng, investigations into its miRNAs have remained scarce. To address this gap, two samples of ginseng adventitious roots and ginseng hairy roots were collected, and subsequent construction and sequencing of small RNA libraries of ginseng adventitious roots and hairy roots were performed using the Illumina HiSeq X Ten platform. The analysis of the sequencing data unveiled total miRNAs 2432. The miR166 and miR396 were the most highly expressed miRNA families in ginseng. The miRNA expression analysis results were used to validate the qRT-PCR. Target genes of miRNA were predicted and GO function annotation and KEGG pathway analysis were performed on target genes. It was found that miRNAs are mainly involved in synthetic pathways and biological processes in plants, which include metabolic and bioregulatory processes. The plant miRNAs enriched KEGG pathways are associated with some metabolism, especially amino acid metabolism and carbohydrate metabolism. These results provide valuable insights miRNAs and their roles in metabolic processes in ginseng. <i<Panax ginseng</i< miRNA target gene miR166 miR396 Botany Yang Jiang verfasserin aut Ziyi Yun verfasserin aut Kexin Zhang verfasserin aut Mingzhu Zhao verfasserin aut Yi Wang verfasserin aut Meiping Zhang verfasserin aut Zhuo Tian verfasserin aut Kangyu Wang verfasserin aut In Plants MDPI AG, 2013 12(2023), 17, p 3070 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:12 year:2023 number:17, p 3070 https://doi.org/10.3390/plants12173070 kostenfrei https://doaj.org/article/9b3ab9d29339420b86ab97a4e941b91a kostenfrei https://www.mdpi.com/2223-7747/12/17/3070 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2023 17, p 3070
language	English
source	In Plants 12(2023), 17, p 3070 volume:12 year:2023 number:17, p 3070
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format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	<i<Panax ginseng</i< miRNA target gene miR166 miR396 Botany
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container_title	Plants
authorswithroles_txt_mv	Chang Liu @@aut@@ Yang Jiang @@aut@@ Ziyi Yun @@aut@@ Kexin Zhang @@aut@@ Mingzhu Zhao @@aut@@ Yi Wang @@aut@@ Meiping Zhang @@aut@@ Zhuo Tian @@aut@@ Kangyu Wang @@aut@@
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callnumber-first	Q - Science
author	Chang Liu
spellingShingle	Chang Liu misc QK1-989 misc <i<Panax ginseng</i< misc miRNA misc target gene misc miR166 misc miR396 misc Botany Small RNA-Seq to Unveil the miRNA Expression Patterns and Identify the Target Genes in <i<Panax ginseng</i<
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topic_title	QK1-989 Small RNA-Seq to Unveil the miRNA Expression Patterns and Identify the Target Genes in <i<Panax ginseng</i< <i<Panax ginseng</i< miRNA target gene miR166 miR396
topic	misc QK1-989 misc <i<Panax ginseng</i< misc miRNA misc target gene misc miR166 misc miR396 misc Botany
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title	Small RNA-Seq to Unveil the miRNA Expression Patterns and Identify the Target Genes in <i<Panax ginseng</i<
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title_full	Small RNA-Seq to Unveil the miRNA Expression Patterns and Identify the Target Genes in <i<Panax ginseng</i<
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author_browse	Chang Liu Yang Jiang Ziyi Yun Kexin Zhang Mingzhu Zhao Yi Wang Meiping Zhang Zhuo Tian Kangyu Wang
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title_sort	small rna-seq to unveil the mirna expression patterns and identify the target genes in <i<panax ginseng</i<
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title_auth	Small RNA-Seq to Unveil the miRNA Expression Patterns and Identify the Target Genes in <i<Panax ginseng</i<
abstract	<i<Panax ginseng</i<, renowned for its medicinal properties, relies on adventitious roots and hairy roots as crucial sources for the production of ginsenosides. Despite the widespread utilization of ginseng, investigations into its miRNAs have remained scarce. To address this gap, two samples of ginseng adventitious roots and ginseng hairy roots were collected, and subsequent construction and sequencing of small RNA libraries of ginseng adventitious roots and hairy roots were performed using the Illumina HiSeq X Ten platform. The analysis of the sequencing data unveiled total miRNAs 2432. The miR166 and miR396 were the most highly expressed miRNA families in ginseng. The miRNA expression analysis results were used to validate the qRT-PCR. Target genes of miRNA were predicted and GO function annotation and KEGG pathway analysis were performed on target genes. It was found that miRNAs are mainly involved in synthetic pathways and biological processes in plants, which include metabolic and bioregulatory processes. The plant miRNAs enriched KEGG pathways are associated with some metabolism, especially amino acid metabolism and carbohydrate metabolism. These results provide valuable insights miRNAs and their roles in metabolic processes in ginseng.
abstractGer	<i<Panax ginseng</i<, renowned for its medicinal properties, relies on adventitious roots and hairy roots as crucial sources for the production of ginsenosides. Despite the widespread utilization of ginseng, investigations into its miRNAs have remained scarce. To address this gap, two samples of ginseng adventitious roots and ginseng hairy roots were collected, and subsequent construction and sequencing of small RNA libraries of ginseng adventitious roots and hairy roots were performed using the Illumina HiSeq X Ten platform. The analysis of the sequencing data unveiled total miRNAs 2432. The miR166 and miR396 were the most highly expressed miRNA families in ginseng. The miRNA expression analysis results were used to validate the qRT-PCR. Target genes of miRNA were predicted and GO function annotation and KEGG pathway analysis were performed on target genes. It was found that miRNAs are mainly involved in synthetic pathways and biological processes in plants, which include metabolic and bioregulatory processes. The plant miRNAs enriched KEGG pathways are associated with some metabolism, especially amino acid metabolism and carbohydrate metabolism. These results provide valuable insights miRNAs and their roles in metabolic processes in ginseng.
abstract_unstemmed	<i<Panax ginseng</i<, renowned for its medicinal properties, relies on adventitious roots and hairy roots as crucial sources for the production of ginsenosides. Despite the widespread utilization of ginseng, investigations into its miRNAs have remained scarce. To address this gap, two samples of ginseng adventitious roots and ginseng hairy roots were collected, and subsequent construction and sequencing of small RNA libraries of ginseng adventitious roots and hairy roots were performed using the Illumina HiSeq X Ten platform. The analysis of the sequencing data unveiled total miRNAs 2432. The miR166 and miR396 were the most highly expressed miRNA families in ginseng. The miRNA expression analysis results were used to validate the qRT-PCR. Target genes of miRNA were predicted and GO function annotation and KEGG pathway analysis were performed on target genes. It was found that miRNAs are mainly involved in synthetic pathways and biological processes in plants, which include metabolic and bioregulatory processes. The plant miRNAs enriched KEGG pathways are associated with some metabolism, especially amino acid metabolism and carbohydrate metabolism. These results provide valuable insights miRNAs and their roles in metabolic processes in ginseng.
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title_short	Small RNA-Seq to Unveil the miRNA Expression Patterns and Identify the Target Genes in <i<Panax ginseng</i<
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