Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<)

Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated...
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Autor*in:	Yilin Wang [verfasserIn] Qiannan Liang [verfasserIn] Chenlu Zhang [verfasserIn] Huanhuan Huang [verfasserIn] Hao He [verfasserIn] Mengyu Wang [verfasserIn] Mengyao Li [verfasserIn] Zhi Huang [verfasserIn] Yi Tang [verfasserIn] Qing Chen [verfasserIn] Huiying Miao [verfasserIn] Huanxiu Li [verfasserIn] Fen Zhang [verfasserIn] Qiaomei Wang [verfasserIn] Bo Sun [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	chloroplast genomes genome assembly and annotation microsatellites inverted repeat genome comparison phylogeny

Übergeordnetes Werk:	In: International Journal of Molecular Sciences - MDPI AG, 2003, 24(2023), 12, p 10287
Übergeordnetes Werk:	volume:24 ; year:2023 ; number:12, p 10287

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc Journal toc

DOI / URN:	10.3390/ijms241210287

Katalog-ID:	DOAJ094133379

Internformat


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245	1	0	\|a Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<)
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520			\|a Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. Our results also provide data that will aid future research on genetics, evolution, and germplasm resources of Brassicaceae.
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allfields	10.3390/ijms241210287 doi (DE-627)DOAJ094133379 (DE-599)DOAJe2cdaeed773f4d0194f8eb340daa83f4 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yilin Wang verfasserin aut Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. Our results also provide data that will aid future research on genetics, evolution, and germplasm resources of Brassicaceae. chloroplast genomes genome assembly and annotation microsatellites inverted repeat genome comparison phylogeny Biology (General) Chemistry Qiannan Liang verfasserin aut Chenlu Zhang verfasserin aut Huanhuan Huang verfasserin aut Hao He verfasserin aut Mengyu Wang verfasserin aut Mengyao Li verfasserin aut Zhi Huang verfasserin aut Yi Tang verfasserin aut Qing Chen verfasserin aut Huiying Miao verfasserin aut Huanxiu Li verfasserin aut Fen Zhang verfasserin aut Qiaomei Wang verfasserin aut Bo Sun verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 12, p 10287 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:12, p 10287 https://doi.org/10.3390/ijms241210287 kostenfrei https://doaj.org/article/e2cdaeed773f4d0194f8eb340daa83f4 kostenfrei https://www.mdpi.com/1422-0067/24/12/10287 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 12, p 10287
spelling	10.3390/ijms241210287 doi (DE-627)DOAJ094133379 (DE-599)DOAJe2cdaeed773f4d0194f8eb340daa83f4 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yilin Wang verfasserin aut Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. Our results also provide data that will aid future research on genetics, evolution, and germplasm resources of Brassicaceae. chloroplast genomes genome assembly and annotation microsatellites inverted repeat genome comparison phylogeny Biology (General) Chemistry Qiannan Liang verfasserin aut Chenlu Zhang verfasserin aut Huanhuan Huang verfasserin aut Hao He verfasserin aut Mengyu Wang verfasserin aut Mengyao Li verfasserin aut Zhi Huang verfasserin aut Yi Tang verfasserin aut Qing Chen verfasserin aut Huiying Miao verfasserin aut Huanxiu Li verfasserin aut Fen Zhang verfasserin aut Qiaomei Wang verfasserin aut Bo Sun verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 12, p 10287 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:12, p 10287 https://doi.org/10.3390/ijms241210287 kostenfrei https://doaj.org/article/e2cdaeed773f4d0194f8eb340daa83f4 kostenfrei https://www.mdpi.com/1422-0067/24/12/10287 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 12, p 10287
allfields_unstemmed	10.3390/ijms241210287 doi (DE-627)DOAJ094133379 (DE-599)DOAJe2cdaeed773f4d0194f8eb340daa83f4 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yilin Wang verfasserin aut Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. Our results also provide data that will aid future research on genetics, evolution, and germplasm resources of Brassicaceae. chloroplast genomes genome assembly and annotation microsatellites inverted repeat genome comparison phylogeny Biology (General) Chemistry Qiannan Liang verfasserin aut Chenlu Zhang verfasserin aut Huanhuan Huang verfasserin aut Hao He verfasserin aut Mengyu Wang verfasserin aut Mengyao Li verfasserin aut Zhi Huang verfasserin aut Yi Tang verfasserin aut Qing Chen verfasserin aut Huiying Miao verfasserin aut Huanxiu Li verfasserin aut Fen Zhang verfasserin aut Qiaomei Wang verfasserin aut Bo Sun verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 12, p 10287 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:12, p 10287 https://doi.org/10.3390/ijms241210287 kostenfrei https://doaj.org/article/e2cdaeed773f4d0194f8eb340daa83f4 kostenfrei https://www.mdpi.com/1422-0067/24/12/10287 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 12, p 10287
allfieldsGer	10.3390/ijms241210287 doi (DE-627)DOAJ094133379 (DE-599)DOAJe2cdaeed773f4d0194f8eb340daa83f4 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yilin Wang verfasserin aut Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. Our results also provide data that will aid future research on genetics, evolution, and germplasm resources of Brassicaceae. chloroplast genomes genome assembly and annotation microsatellites inverted repeat genome comparison phylogeny Biology (General) Chemistry Qiannan Liang verfasserin aut Chenlu Zhang verfasserin aut Huanhuan Huang verfasserin aut Hao He verfasserin aut Mengyu Wang verfasserin aut Mengyao Li verfasserin aut Zhi Huang verfasserin aut Yi Tang verfasserin aut Qing Chen verfasserin aut Huiying Miao verfasserin aut Huanxiu Li verfasserin aut Fen Zhang verfasserin aut Qiaomei Wang verfasserin aut Bo Sun verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 12, p 10287 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:12, p 10287 https://doi.org/10.3390/ijms241210287 kostenfrei https://doaj.org/article/e2cdaeed773f4d0194f8eb340daa83f4 kostenfrei https://www.mdpi.com/1422-0067/24/12/10287 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 12, p 10287
allfieldsSound	10.3390/ijms241210287 doi (DE-627)DOAJ094133379 (DE-599)DOAJe2cdaeed773f4d0194f8eb340daa83f4 DE-627 ger DE-627 rakwb eng QH301-705.5 QD1-999 Yilin Wang verfasserin aut Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. Our results also provide data that will aid future research on genetics, evolution, and germplasm resources of Brassicaceae. chloroplast genomes genome assembly and annotation microsatellites inverted repeat genome comparison phylogeny Biology (General) Chemistry Qiannan Liang verfasserin aut Chenlu Zhang verfasserin aut Huanhuan Huang verfasserin aut Hao He verfasserin aut Mengyu Wang verfasserin aut Mengyao Li verfasserin aut Zhi Huang verfasserin aut Yi Tang verfasserin aut Qing Chen verfasserin aut Huiying Miao verfasserin aut Huanxiu Li verfasserin aut Fen Zhang verfasserin aut Qiaomei Wang verfasserin aut Bo Sun verfasserin aut In International Journal of Molecular Sciences MDPI AG, 2003 24(2023), 12, p 10287 (DE-627)316340715 (DE-600)2019364-6 14220067 nnns volume:24 year:2023 number:12, p 10287 https://doi.org/10.3390/ijms241210287 kostenfrei https://doaj.org/article/e2cdaeed773f4d0194f8eb340daa83f4 kostenfrei https://www.mdpi.com/1422-0067/24/12/10287 kostenfrei https://doaj.org/toc/1661-6596 Journal toc kostenfrei https://doaj.org/toc/1422-0067 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 24 2023 12, p 10287
language	English
source	In International Journal of Molecular Sciences 24(2023), 12, p 10287 volume:24 year:2023 number:12, p 10287
sourceStr	In International Journal of Molecular Sciences 24(2023), 12, p 10287 volume:24 year:2023 number:12, p 10287
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	chloroplast genomes genome assembly and annotation microsatellites inverted repeat genome comparison phylogeny Biology (General) Chemistry
isfreeaccess_bool	true
container_title	International Journal of Molecular Sciences
authorswithroles_txt_mv	Yilin Wang @@aut@@ Qiannan Liang @@aut@@ Chenlu Zhang @@aut@@ Huanhuan Huang @@aut@@ Hao He @@aut@@ Mengyu Wang @@aut@@ Mengyao Li @@aut@@ Zhi Huang @@aut@@ Yi Tang @@aut@@ Qing Chen @@aut@@ Huiying Miao @@aut@@ Huanxiu Li @@aut@@ Fen Zhang @@aut@@ Qiaomei Wang @@aut@@ Bo Sun @@aut@@
publishDateDaySort_date	2023-01-01T00:00:00Z
hierarchy_top_id	316340715
id	DOAJ094133379
language_de	englisch
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callnumber-first	Q - Science
author	Yilin Wang
spellingShingle	Yilin Wang misc QH301-705.5 misc QD1-999 misc chloroplast genomes misc genome assembly and annotation misc microsatellites misc inverted repeat misc genome comparison misc phylogeny misc Biology (General) misc Chemistry Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<)
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topic_title	QH301-705.5 QD1-999 Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<) chloroplast genomes genome assembly and annotation microsatellites inverted repeat genome comparison phylogeny
topic	misc QH301-705.5 misc QD1-999 misc chloroplast genomes misc genome assembly and annotation misc microsatellites misc inverted repeat misc genome comparison misc phylogeny misc Biology (General) misc Chemistry
topic_unstemmed	misc QH301-705.5 misc QD1-999 misc chloroplast genomes misc genome assembly and annotation misc microsatellites misc inverted repeat misc genome comparison misc phylogeny misc Biology (General) misc Chemistry
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title	Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<)
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title_full	Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<)
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author_browse	Yilin Wang Qiannan Liang Chenlu Zhang Huanhuan Huang Hao He Mengyu Wang Mengyao Li Zhi Huang Yi Tang Qing Chen Huiying Miao Huanxiu Li Fen Zhang Qiaomei Wang Bo Sun
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title_sort	sequencing and analysis of complete chloroplast genomes provide insight into the evolution and phylogeny of chinese kale (<i<brassica oleracea</i< var. <i<alboglabra</i<)
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title_auth	Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<)
abstract	Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. Our results also provide data that will aid future research on genetics, evolution, and germplasm resources of Brassicaceae.
abstractGer	Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. Our results also provide data that will aid future research on genetics, evolution, and germplasm resources of Brassicaceae.
abstract_unstemmed	Chinese kale is a widely cultivated plant in the genus <i<Brassica</i< in the family Brassicaceae. The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. Our results also provide data that will aid future research on genetics, evolution, and germplasm resources of Brassicaceae.
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title_short	Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<)
url	https://doi.org/10.3390/ijms241210287 https://doaj.org/article/e2cdaeed773f4d0194f8eb340daa83f4 https://www.mdpi.com/1422-0067/24/12/10287 https://doaj.org/toc/1661-6596 https://doaj.org/toc/1422-0067
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The origin of <i<Brassica</i< has been studied extensively, but the origin of Chinese kale remains unclear. In contrast to <i<Brassica oleracea</i<, which originated in the Mediterranean region, Chinese kale originated in southern China. The chloroplast genome is often used for phylogenetic analysis because of its high conservatism. Fifteen pairs of universal primers were used to amplify the chloroplast genomes of white-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Sijicutiao (SJCT)) and yellow-flower Chinese kale (<i<Brassica oleracea</i< var. <i<alboglabra</i< cv. Fuzhouhuanghua (FZHH)) via PCR. The lengths of the chloroplast genomes were 153,365 bp (SJCT) and 153,420 bp (FZHH) and both contained 87 protein-coding genes and eight rRNA genes. There were 36 tRNA genes in SJCT and 35 tRNA genes in FZHH. The chloroplast genomes of both Chinese kale varieties, along with eight other Brassicaceae, were analyzed. Simple sequence repeats, long repeats, and variable regions of DNA barcodes were identified. An analysis of inverted repeat boundaries, relative synonymous codon usage, and synteny revealed high similarity among the ten species, albeit the slight differences that were observed. The Ka/Ks ratios and phylogenetic analysis suggest that Chinese kale is a variant of <i<B. oleracea</i<. The phylogenetic tree shows that both Chinese kale varieties and <i<B. oleracea</i< var. <i<oleracea</i< were clustered in a single group. The results of this study suggest that white and yellow flower Chinese kale comprise a monophyletic group and that their differences in flower color arose late in the process of artificial cultivation. 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Sequencing and Analysis of Complete Chloroplast Genomes Provide Insight into the Evolution and Phylogeny of Chinese Kale (<i<Brassica oleracea</i< var. <i<alboglabra</i<)

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