Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.)

NAM, ATAF, and CUC (NAC) proteins are plant-specific transcription factors that play crucial roles in fiber growth by regulating the secondary wall thickening. In this study, a systematical investigation of <i<NAC</i< genes was performed in the genome of ramie, an important fiber crop, r...
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Autor*in:	Zheng Zeng [verfasserIn] Chan Liu [verfasserIn] Xueyu Zhang [verfasserIn] Siyuan Zhu [verfasserIn] Yanzhou Wang [verfasserIn] Touming Liu [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	NAC transcription factor ramie fiber growth overexpression analysis gene expression

Übergeordnetes Werk:	In: Agronomy - MDPI AG, 2012, 13(2023), 5, p 1311
Übergeordnetes Werk:	volume:13 ; year:2023 ; number:5, p 1311

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/agronomy13051311

Katalog-ID:	DOAJ094433577

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allfields	10.3390/agronomy13051311 doi (DE-627)DOAJ094433577 (DE-599)DOAJ6cff8424bed4401088a0afd554d5e89f DE-627 ger DE-627 rakwb eng Zheng Zeng verfasserin aut Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier NAM, ATAF, and CUC (NAC) proteins are plant-specific transcription factors that play crucial roles in fiber growth by regulating the secondary wall thickening. In this study, a systematical investigation of <i<NAC</i< genes was performed in the genome of ramie, an important fiber crop, resulting in a total of 60 ramie <i<NAC</i< genes identified. Phylogenetic analysis of these 60 NAC members in conjunction with 111 Arabidopsis NAC proteins identified 11 subfamilies, three of which showed considerable contraction in the ramie genome. Ten ramie <i<NAC</i< genes were identified to encode the orthologs of Arabidopsis NAC regulators involved in the control of secondary wall biosynthesis. Of these ten genes, most showed relatively high expression in the stems, and eight displayed a differential expression between the barks from the top and middle section of the stems where fiber growth is under different stages. Furthermore, the overexpression of three of these ten <i<NAC</i< genes significantly promoted fiber growth in transgenic Arabidopsis. These results indicated that these ten <i<NAC</i< genes were associated with the fiber growth of ramie. This study provided an important basis for researching the regulatory mechanism of fiber growth. NAC transcription factor ramie fiber growth overexpression analysis gene expression Agriculture S Chan Liu verfasserin aut Xueyu Zhang verfasserin aut Siyuan Zhu verfasserin aut Yanzhou Wang verfasserin aut Touming Liu verfasserin aut In Agronomy MDPI AG, 2012 13(2023), 5, p 1311 (DE-627)658000543 (DE-600)2607043-1 20734395 nnns volume:13 year:2023 number:5, p 1311 https://doi.org/10.3390/agronomy13051311 kostenfrei https://doaj.org/article/6cff8424bed4401088a0afd554d5e89f kostenfrei https://www.mdpi.com/2073-4395/13/5/1311 kostenfrei https://doaj.org/toc/2073-4395 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2023 5, p 1311
spelling	10.3390/agronomy13051311 doi (DE-627)DOAJ094433577 (DE-599)DOAJ6cff8424bed4401088a0afd554d5e89f DE-627 ger DE-627 rakwb eng Zheng Zeng verfasserin aut Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier NAM, ATAF, and CUC (NAC) proteins are plant-specific transcription factors that play crucial roles in fiber growth by regulating the secondary wall thickening. In this study, a systematical investigation of <i<NAC</i< genes was performed in the genome of ramie, an important fiber crop, resulting in a total of 60 ramie <i<NAC</i< genes identified. Phylogenetic analysis of these 60 NAC members in conjunction with 111 Arabidopsis NAC proteins identified 11 subfamilies, three of which showed considerable contraction in the ramie genome. Ten ramie <i<NAC</i< genes were identified to encode the orthologs of Arabidopsis NAC regulators involved in the control of secondary wall biosynthesis. Of these ten genes, most showed relatively high expression in the stems, and eight displayed a differential expression between the barks from the top and middle section of the stems where fiber growth is under different stages. Furthermore, the overexpression of three of these ten <i<NAC</i< genes significantly promoted fiber growth in transgenic Arabidopsis. These results indicated that these ten <i<NAC</i< genes were associated with the fiber growth of ramie. This study provided an important basis for researching the regulatory mechanism of fiber growth. NAC transcription factor ramie fiber growth overexpression analysis gene expression Agriculture S Chan Liu verfasserin aut Xueyu Zhang verfasserin aut Siyuan Zhu verfasserin aut Yanzhou Wang verfasserin aut Touming Liu verfasserin aut In Agronomy MDPI AG, 2012 13(2023), 5, p 1311 (DE-627)658000543 (DE-600)2607043-1 20734395 nnns volume:13 year:2023 number:5, p 1311 https://doi.org/10.3390/agronomy13051311 kostenfrei https://doaj.org/article/6cff8424bed4401088a0afd554d5e89f kostenfrei https://www.mdpi.com/2073-4395/13/5/1311 kostenfrei https://doaj.org/toc/2073-4395 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2023 5, p 1311
allfields_unstemmed	10.3390/agronomy13051311 doi (DE-627)DOAJ094433577 (DE-599)DOAJ6cff8424bed4401088a0afd554d5e89f DE-627 ger DE-627 rakwb eng Zheng Zeng verfasserin aut Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier NAM, ATAF, and CUC (NAC) proteins are plant-specific transcription factors that play crucial roles in fiber growth by regulating the secondary wall thickening. In this study, a systematical investigation of <i<NAC</i< genes was performed in the genome of ramie, an important fiber crop, resulting in a total of 60 ramie <i<NAC</i< genes identified. Phylogenetic analysis of these 60 NAC members in conjunction with 111 Arabidopsis NAC proteins identified 11 subfamilies, three of which showed considerable contraction in the ramie genome. Ten ramie <i<NAC</i< genes were identified to encode the orthologs of Arabidopsis NAC regulators involved in the control of secondary wall biosynthesis. Of these ten genes, most showed relatively high expression in the stems, and eight displayed a differential expression between the barks from the top and middle section of the stems where fiber growth is under different stages. Furthermore, the overexpression of three of these ten <i<NAC</i< genes significantly promoted fiber growth in transgenic Arabidopsis. These results indicated that these ten <i<NAC</i< genes were associated with the fiber growth of ramie. This study provided an important basis for researching the regulatory mechanism of fiber growth. NAC transcription factor ramie fiber growth overexpression analysis gene expression Agriculture S Chan Liu verfasserin aut Xueyu Zhang verfasserin aut Siyuan Zhu verfasserin aut Yanzhou Wang verfasserin aut Touming Liu verfasserin aut In Agronomy MDPI AG, 2012 13(2023), 5, p 1311 (DE-627)658000543 (DE-600)2607043-1 20734395 nnns volume:13 year:2023 number:5, p 1311 https://doi.org/10.3390/agronomy13051311 kostenfrei https://doaj.org/article/6cff8424bed4401088a0afd554d5e89f kostenfrei https://www.mdpi.com/2073-4395/13/5/1311 kostenfrei https://doaj.org/toc/2073-4395 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2023 5, p 1311
allfieldsGer	10.3390/agronomy13051311 doi (DE-627)DOAJ094433577 (DE-599)DOAJ6cff8424bed4401088a0afd554d5e89f DE-627 ger DE-627 rakwb eng Zheng Zeng verfasserin aut Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier NAM, ATAF, and CUC (NAC) proteins are plant-specific transcription factors that play crucial roles in fiber growth by regulating the secondary wall thickening. In this study, a systematical investigation of <i<NAC</i< genes was performed in the genome of ramie, an important fiber crop, resulting in a total of 60 ramie <i<NAC</i< genes identified. Phylogenetic analysis of these 60 NAC members in conjunction with 111 Arabidopsis NAC proteins identified 11 subfamilies, three of which showed considerable contraction in the ramie genome. Ten ramie <i<NAC</i< genes were identified to encode the orthologs of Arabidopsis NAC regulators involved in the control of secondary wall biosynthesis. Of these ten genes, most showed relatively high expression in the stems, and eight displayed a differential expression between the barks from the top and middle section of the stems where fiber growth is under different stages. Furthermore, the overexpression of three of these ten <i<NAC</i< genes significantly promoted fiber growth in transgenic Arabidopsis. These results indicated that these ten <i<NAC</i< genes were associated with the fiber growth of ramie. This study provided an important basis for researching the regulatory mechanism of fiber growth. NAC transcription factor ramie fiber growth overexpression analysis gene expression Agriculture S Chan Liu verfasserin aut Xueyu Zhang verfasserin aut Siyuan Zhu verfasserin aut Yanzhou Wang verfasserin aut Touming Liu verfasserin aut In Agronomy MDPI AG, 2012 13(2023), 5, p 1311 (DE-627)658000543 (DE-600)2607043-1 20734395 nnns volume:13 year:2023 number:5, p 1311 https://doi.org/10.3390/agronomy13051311 kostenfrei https://doaj.org/article/6cff8424bed4401088a0afd554d5e89f kostenfrei https://www.mdpi.com/2073-4395/13/5/1311 kostenfrei https://doaj.org/toc/2073-4395 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2023 5, p 1311
allfieldsSound	10.3390/agronomy13051311 doi (DE-627)DOAJ094433577 (DE-599)DOAJ6cff8424bed4401088a0afd554d5e89f DE-627 ger DE-627 rakwb eng Zheng Zeng verfasserin aut Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier NAM, ATAF, and CUC (NAC) proteins are plant-specific transcription factors that play crucial roles in fiber growth by regulating the secondary wall thickening. In this study, a systematical investigation of <i<NAC</i< genes was performed in the genome of ramie, an important fiber crop, resulting in a total of 60 ramie <i<NAC</i< genes identified. Phylogenetic analysis of these 60 NAC members in conjunction with 111 Arabidopsis NAC proteins identified 11 subfamilies, three of which showed considerable contraction in the ramie genome. Ten ramie <i<NAC</i< genes were identified to encode the orthologs of Arabidopsis NAC regulators involved in the control of secondary wall biosynthesis. Of these ten genes, most showed relatively high expression in the stems, and eight displayed a differential expression between the barks from the top and middle section of the stems where fiber growth is under different stages. Furthermore, the overexpression of three of these ten <i<NAC</i< genes significantly promoted fiber growth in transgenic Arabidopsis. These results indicated that these ten <i<NAC</i< genes were associated with the fiber growth of ramie. This study provided an important basis for researching the regulatory mechanism of fiber growth. NAC transcription factor ramie fiber growth overexpression analysis gene expression Agriculture S Chan Liu verfasserin aut Xueyu Zhang verfasserin aut Siyuan Zhu verfasserin aut Yanzhou Wang verfasserin aut Touming Liu verfasserin aut In Agronomy MDPI AG, 2012 13(2023), 5, p 1311 (DE-627)658000543 (DE-600)2607043-1 20734395 nnns volume:13 year:2023 number:5, p 1311 https://doi.org/10.3390/agronomy13051311 kostenfrei https://doaj.org/article/6cff8424bed4401088a0afd554d5e89f kostenfrei https://www.mdpi.com/2073-4395/13/5/1311 kostenfrei https://doaj.org/toc/2073-4395 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 13 2023 5, p 1311
language	English
source	In Agronomy 13(2023), 5, p 1311 volume:13 year:2023 number:5, p 1311
sourceStr	In Agronomy 13(2023), 5, p 1311 volume:13 year:2023 number:5, p 1311
format_phy_str_mv	Article
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topic_facet	NAC transcription factor ramie fiber growth overexpression analysis gene expression Agriculture S
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container_title	Agronomy
authorswithroles_txt_mv	Zheng Zeng @@aut@@ Chan Liu @@aut@@ Xueyu Zhang @@aut@@ Siyuan Zhu @@aut@@ Yanzhou Wang @@aut@@ Touming Liu @@aut@@
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author	Zheng Zeng
spellingShingle	Zheng Zeng misc NAC transcription factor misc ramie misc fiber growth misc overexpression analysis misc gene expression misc Agriculture misc S Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.)
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topic_title	Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.) NAC transcription factor ramie fiber growth overexpression analysis gene expression
topic	misc NAC transcription factor misc ramie misc fiber growth misc overexpression analysis misc gene expression misc Agriculture misc S
topic_unstemmed	misc NAC transcription factor misc ramie misc fiber growth misc overexpression analysis misc gene expression misc Agriculture misc S
topic_browse	misc NAC transcription factor misc ramie misc fiber growth misc overexpression analysis misc gene expression misc Agriculture misc S
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title	Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.)
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title_full	Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.)
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author_browse	Zheng Zeng Chan Liu Xueyu Zhang Siyuan Zhu Yanzhou Wang Touming Liu
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title_sort	genome-wide identification of <i<nac</i< genes associated with bast fiber growth in ramie (<i<boehmeria nivea</i< l.)
title_auth	Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.)
abstract	NAM, ATAF, and CUC (NAC) proteins are plant-specific transcription factors that play crucial roles in fiber growth by regulating the secondary wall thickening. In this study, a systematical investigation of <i<NAC</i< genes was performed in the genome of ramie, an important fiber crop, resulting in a total of 60 ramie <i<NAC</i< genes identified. Phylogenetic analysis of these 60 NAC members in conjunction with 111 Arabidopsis NAC proteins identified 11 subfamilies, three of which showed considerable contraction in the ramie genome. Ten ramie <i<NAC</i< genes were identified to encode the orthologs of Arabidopsis NAC regulators involved in the control of secondary wall biosynthesis. Of these ten genes, most showed relatively high expression in the stems, and eight displayed a differential expression between the barks from the top and middle section of the stems where fiber growth is under different stages. Furthermore, the overexpression of three of these ten <i<NAC</i< genes significantly promoted fiber growth in transgenic Arabidopsis. These results indicated that these ten <i<NAC</i< genes were associated with the fiber growth of ramie. This study provided an important basis for researching the regulatory mechanism of fiber growth.
abstractGer	NAM, ATAF, and CUC (NAC) proteins are plant-specific transcription factors that play crucial roles in fiber growth by regulating the secondary wall thickening. In this study, a systematical investigation of <i<NAC</i< genes was performed in the genome of ramie, an important fiber crop, resulting in a total of 60 ramie <i<NAC</i< genes identified. Phylogenetic analysis of these 60 NAC members in conjunction with 111 Arabidopsis NAC proteins identified 11 subfamilies, three of which showed considerable contraction in the ramie genome. Ten ramie <i<NAC</i< genes were identified to encode the orthologs of Arabidopsis NAC regulators involved in the control of secondary wall biosynthesis. Of these ten genes, most showed relatively high expression in the stems, and eight displayed a differential expression between the barks from the top and middle section of the stems where fiber growth is under different stages. Furthermore, the overexpression of three of these ten <i<NAC</i< genes significantly promoted fiber growth in transgenic Arabidopsis. These results indicated that these ten <i<NAC</i< genes were associated with the fiber growth of ramie. This study provided an important basis for researching the regulatory mechanism of fiber growth.
abstract_unstemmed	NAM, ATAF, and CUC (NAC) proteins are plant-specific transcription factors that play crucial roles in fiber growth by regulating the secondary wall thickening. In this study, a systematical investigation of <i<NAC</i< genes was performed in the genome of ramie, an important fiber crop, resulting in a total of 60 ramie <i<NAC</i< genes identified. Phylogenetic analysis of these 60 NAC members in conjunction with 111 Arabidopsis NAC proteins identified 11 subfamilies, three of which showed considerable contraction in the ramie genome. Ten ramie <i<NAC</i< genes were identified to encode the orthologs of Arabidopsis NAC regulators involved in the control of secondary wall biosynthesis. Of these ten genes, most showed relatively high expression in the stems, and eight displayed a differential expression between the barks from the top and middle section of the stems where fiber growth is under different stages. Furthermore, the overexpression of three of these ten <i<NAC</i< genes significantly promoted fiber growth in transgenic Arabidopsis. These results indicated that these ten <i<NAC</i< genes were associated with the fiber growth of ramie. This study provided an important basis for researching the regulatory mechanism of fiber growth.
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title_short	Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.)
url	https://doi.org/10.3390/agronomy13051311 https://doaj.org/article/6cff8424bed4401088a0afd554d5e89f https://www.mdpi.com/2073-4395/13/5/1311 https://doaj.org/toc/2073-4395
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Genome-Wide Identification of <i<NAC</i< Genes Associated with Bast Fiber Growth in Ramie (<i<Boehmeria nivea</i< L.)

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