Genome-Wide Association Studies of Biluochun Tea Plant Populations in Dongting Mountain and Comprehensive Identification of Candidate Genes Associated with Core Agronomic Traits by Four Analysis Models

The elite germplasm resources are key to the beautiful appearance and pleasant flavor of Biluochun tea. We collected and measured the agronomic traits of 95 tea plants to reveal the trait diversity and breeding value of Biluochun tea plant populations. The results revealed that the agronomic traits...
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Autor*in:	Xiaogang Lei [verfasserIn] Haoyu Li [verfasserIn] Pingping Li [verfasserIn] Huan Zhang [verfasserIn] Zhaolan Han [verfasserIn] Bin Yang [verfasserIn] Yu Duan [verfasserIn] Ndombi Salome Njeri [verfasserIn] Daqiang Yang [verfasserIn] Junhua Zheng [verfasserIn] Yuanchun Ma [verfasserIn] Xujun Zhu [verfasserIn] Wanping Fang [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	Biluochun tea plant genome-wide association study agronomic traits single nucleotide polymorphisms marker-assisted breeding

Übergeordnetes Werk:	In: Plants - MDPI AG, 2013, 12(2023), 21, p 3719
Übergeordnetes Werk:	volume:12 ; year:2023 ; number:21, p 3719

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/plants12213719

Katalog-ID:	DOAJ095445161

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spelling	10.3390/plants12213719 doi (DE-627)DOAJ095445161 (DE-599)DOAJe27cb5874fba4d98af451ca95fa7d029 DE-627 ger DE-627 rakwb eng QK1-989 Xiaogang Lei verfasserin aut Genome-Wide Association Studies of Biluochun Tea Plant Populations in Dongting Mountain and Comprehensive Identification of Candidate Genes Associated with Core Agronomic Traits by Four Analysis Models 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The elite germplasm resources are key to the beautiful appearance and pleasant flavor of Biluochun tea. We collected and measured the agronomic traits of 95 tea plants to reveal the trait diversity and breeding value of Biluochun tea plant populations. The results revealed that the agronomic traits of Biluochun tea plant populations were diverse and had high breeding value. Additionally, we resequenced these tea plant populations to reveal genetic diversity, population structure, and selection pressure. The Biluochun tea plant populations contained two groups and were least affected by natural selection based on the results of population structure and selection pressure. More importantly, four non-synonymous single nucleotide polymorphisms (nsSNPs) and candidate genes associated with (−)-gallocatechin gallate (GCG), (−)-gallocatechin (GC), and caffeine (CAF) were detected using at least two GWAS models. The results will promote the development and application of molecular markers and the utilization of elite germplasm from Biluochun populations. Biluochun tea plant genome-wide association study agronomic traits single nucleotide polymorphisms marker-assisted breeding Botany Haoyu Li verfasserin aut Pingping Li verfasserin aut Huan Zhang verfasserin aut Zhaolan Han verfasserin aut Bin Yang verfasserin aut Yu Duan verfasserin aut Ndombi Salome Njeri verfasserin aut Daqiang Yang verfasserin aut Junhua Zheng verfasserin aut Yuanchun Ma verfasserin aut Xujun Zhu verfasserin aut Wanping Fang verfasserin aut In Plants MDPI AG, 2013 12(2023), 21, p 3719 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:12 year:2023 number:21, p 3719 https://doi.org/10.3390/plants12213719 kostenfrei https://doaj.org/article/e27cb5874fba4d98af451ca95fa7d029 kostenfrei https://www.mdpi.com/2223-7747/12/21/3719 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2023 21, p 3719
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callnumber-first	Q - Science
author	Xiaogang Lei
spellingShingle	Xiaogang Lei misc QK1-989 misc Biluochun tea plant misc genome-wide association study misc agronomic traits misc single nucleotide polymorphisms misc marker-assisted breeding misc Botany Genome-Wide Association Studies of Biluochun Tea Plant Populations in Dongting Mountain and Comprehensive Identification of Candidate Genes Associated with Core Agronomic Traits by Four Analysis Models
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topic_title	QK1-989 Genome-Wide Association Studies of Biluochun Tea Plant Populations in Dongting Mountain and Comprehensive Identification of Candidate Genes Associated with Core Agronomic Traits by Four Analysis Models Biluochun tea plant genome-wide association study agronomic traits single nucleotide polymorphisms marker-assisted breeding
topic	misc QK1-989 misc Biluochun tea plant misc genome-wide association study misc agronomic traits misc single nucleotide polymorphisms misc marker-assisted breeding misc Botany
topic_unstemmed	misc QK1-989 misc Biluochun tea plant misc genome-wide association study misc agronomic traits misc single nucleotide polymorphisms misc marker-assisted breeding misc Botany
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title	Genome-Wide Association Studies of Biluochun Tea Plant Populations in Dongting Mountain and Comprehensive Identification of Candidate Genes Associated with Core Agronomic Traits by Four Analysis Models
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title_full	Genome-Wide Association Studies of Biluochun Tea Plant Populations in Dongting Mountain and Comprehensive Identification of Candidate Genes Associated with Core Agronomic Traits by Four Analysis Models
author_sort	Xiaogang Lei
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author_browse	Xiaogang Lei Haoyu Li Pingping Li Huan Zhang Zhaolan Han Bin Yang Yu Duan Ndombi Salome Njeri Daqiang Yang Junhua Zheng Yuanchun Ma Xujun Zhu Wanping Fang
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title_sort	genome-wide association studies of biluochun tea plant populations in dongting mountain and comprehensive identification of candidate genes associated with core agronomic traits by four analysis models
callnumber	QK1-989
title_auth	Genome-Wide Association Studies of Biluochun Tea Plant Populations in Dongting Mountain and Comprehensive Identification of Candidate Genes Associated with Core Agronomic Traits by Four Analysis Models
abstract	The elite germplasm resources are key to the beautiful appearance and pleasant flavor of Biluochun tea. We collected and measured the agronomic traits of 95 tea plants to reveal the trait diversity and breeding value of Biluochun tea plant populations. The results revealed that the agronomic traits of Biluochun tea plant populations were diverse and had high breeding value. Additionally, we resequenced these tea plant populations to reveal genetic diversity, population structure, and selection pressure. The Biluochun tea plant populations contained two groups and were least affected by natural selection based on the results of population structure and selection pressure. More importantly, four non-synonymous single nucleotide polymorphisms (nsSNPs) and candidate genes associated with (−)-gallocatechin gallate (GCG), (−)-gallocatechin (GC), and caffeine (CAF) were detected using at least two GWAS models. The results will promote the development and application of molecular markers and the utilization of elite germplasm from Biluochun populations.
abstractGer	The elite germplasm resources are key to the beautiful appearance and pleasant flavor of Biluochun tea. We collected and measured the agronomic traits of 95 tea plants to reveal the trait diversity and breeding value of Biluochun tea plant populations. The results revealed that the agronomic traits of Biluochun tea plant populations were diverse and had high breeding value. Additionally, we resequenced these tea plant populations to reveal genetic diversity, population structure, and selection pressure. The Biluochun tea plant populations contained two groups and were least affected by natural selection based on the results of population structure and selection pressure. More importantly, four non-synonymous single nucleotide polymorphisms (nsSNPs) and candidate genes associated with (−)-gallocatechin gallate (GCG), (−)-gallocatechin (GC), and caffeine (CAF) were detected using at least two GWAS models. The results will promote the development and application of molecular markers and the utilization of elite germplasm from Biluochun populations.
abstract_unstemmed	The elite germplasm resources are key to the beautiful appearance and pleasant flavor of Biluochun tea. We collected and measured the agronomic traits of 95 tea plants to reveal the trait diversity and breeding value of Biluochun tea plant populations. The results revealed that the agronomic traits of Biluochun tea plant populations were diverse and had high breeding value. Additionally, we resequenced these tea plant populations to reveal genetic diversity, population structure, and selection pressure. The Biluochun tea plant populations contained two groups and were least affected by natural selection based on the results of population structure and selection pressure. More importantly, four non-synonymous single nucleotide polymorphisms (nsSNPs) and candidate genes associated with (−)-gallocatechin gallate (GCG), (−)-gallocatechin (GC), and caffeine (CAF) were detected using at least two GWAS models. The results will promote the development and application of molecular markers and the utilization of elite germplasm from Biluochun populations.
collection_details	GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700
container_issue	21, p 3719
title_short	Genome-Wide Association Studies of Biluochun Tea Plant Populations in Dongting Mountain and Comprehensive Identification of Candidate Genes Associated with Core Agronomic Traits by Four Analysis Models
url	https://doi.org/10.3390/plants12213719 https://doaj.org/article/e27cb5874fba4d98af451ca95fa7d029 https://www.mdpi.com/2223-7747/12/21/3719 https://doaj.org/toc/2223-7747
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author2	Haoyu Li Pingping Li Huan Zhang Zhaolan Han Bin Yang Yu Duan Ndombi Salome Njeri Daqiang Yang Junhua Zheng Yuanchun Ma Xujun Zhu Wanping Fang
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doi_str	10.3390/plants12213719
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up_date	2024-07-03T14:42:10.867Z
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Genome-Wide Association Studies of Biluochun Tea Plant Populations in Dongting Mountain and Comprehensive Identification of Candidate Genes Associated with Core Agronomic Traits by Four Analysis Models

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