A practical approach to genome assembly and annotation of Basidiomycota using the example of Armillaria

Technological advancements in genome sequencing, assembly and annotation platforms and algorithms that resulted in several genomic studies have created an opportunity to further our understanding of the biology of phytopathogens, including Armillaria species. Most Armillaria species are facultative...
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Autor*in:	Deborah L Narh Mensah [verfasserIn] Brenda D Wingfield [verfasserIn] Martin PA Coetzee [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	bioinformatics DNA extraction evolution genomics metabolomics next-generation sequencing

Übergeordnetes Werk:	In: BioTechniques - Future Science Ltd, 2019, 75(2023), 3, Seite 115-128
Übergeordnetes Werk:	volume:75 ; year:2023 ; number:3 ; pages:115-128

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc Journal toc

DOI / URN:	10.2144/btn-2023-0023

Katalog-ID:	DOAJ096873485

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spellingShingle	Deborah L Narh Mensah misc QH301-705.5 misc bioinformatics misc DNA extraction misc evolution misc genomics misc metabolomics misc next-generation sequencing misc Biology (General) A practical approach to genome assembly and annotation of Basidiomycota using the example of Armillaria
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topic_title	QH301-705.5 A practical approach to genome assembly and annotation of Basidiomycota using the example of Armillaria bioinformatics DNA extraction evolution genomics metabolomics next-generation sequencing
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title	A practical approach to genome assembly and annotation of Basidiomycota using the example of Armillaria
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title_sort	practical approach to genome assembly and annotation of basidiomycota using the example of armillaria
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title_auth	A practical approach to genome assembly and annotation of Basidiomycota using the example of Armillaria
abstract	Technological advancements in genome sequencing, assembly and annotation platforms and algorithms that resulted in several genomic studies have created an opportunity to further our understanding of the biology of phytopathogens, including Armillaria species. Most Armillaria species are facultative necrotrophs that cause root- and stem-rot, usually on woody plants, significantly impacting agriculture and forestry worldwide. Genome sequencing, assembly and annotation in terms of samples used and methods applied in Armillaria genome projects are evaluated in this review. Infographic guidelines and a database of resources to facilitate future Armillaria genome projects were developed. Knowledge gained from genomic studies of Armillaria species is summarized and prospects for further research are provided. This guide can be applied to other diploid and dikaryotic fungal genomics.
abstractGer	Technological advancements in genome sequencing, assembly and annotation platforms and algorithms that resulted in several genomic studies have created an opportunity to further our understanding of the biology of phytopathogens, including Armillaria species. Most Armillaria species are facultative necrotrophs that cause root- and stem-rot, usually on woody plants, significantly impacting agriculture and forestry worldwide. Genome sequencing, assembly and annotation in terms of samples used and methods applied in Armillaria genome projects are evaluated in this review. Infographic guidelines and a database of resources to facilitate future Armillaria genome projects were developed. Knowledge gained from genomic studies of Armillaria species is summarized and prospects for further research are provided. This guide can be applied to other diploid and dikaryotic fungal genomics.
abstract_unstemmed	Technological advancements in genome sequencing, assembly and annotation platforms and algorithms that resulted in several genomic studies have created an opportunity to further our understanding of the biology of phytopathogens, including Armillaria species. Most Armillaria species are facultative necrotrophs that cause root- and stem-rot, usually on woody plants, significantly impacting agriculture and forestry worldwide. Genome sequencing, assembly and annotation in terms of samples used and methods applied in Armillaria genome projects are evaluated in this review. Infographic guidelines and a database of resources to facilitate future Armillaria genome projects were developed. Knowledge gained from genomic studies of Armillaria species is summarized and prospects for further research are provided. This guide can be applied to other diploid and dikaryotic fungal genomics.
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title_short	A practical approach to genome assembly and annotation of Basidiomycota using the example of Armillaria
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A practical approach to genome assembly and annotation of Basidiomycota using the example of Armillaria

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