The complete chloroplast genome of Cucumis anguria var. anguria (Cucurbitaceae) and its phylogenetic implication

The genus Cucumis contains 52 species, including two economically significant crops, cucumber and melon, as well as other important species. Cucumis anguria var. anguria is a wild relative of C. melon, native to Africa. Cucumis anguria is rich in vitamins and minerals in gherkin fruits and carries b...
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Autor*in:	Hong Cheng [verfasserIn] Wei-ping Kong [verfasserIn] Min-min Zhang [verfasserIn] Dong Hou [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2020

Schlagwörter:	cucumis anguria var. anguria complete chloroplast genome phylogenetic analysis cucurbitaceae

Übergeordnetes Werk:	In: Mitochondrial DNA. Part B. Resources - Taylor & Francis Group, 2023, 5(2020), 1, Seite 654-655
Übergeordnetes Werk:	volume:5 ; year:2020 ; number:1 ; pages:654-655

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.1080/23802359.2019.1711231

Katalog-ID:	DOAJ096878274

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callnumber-first	Q - Science
author	Hong Cheng
spellingShingle	Hong Cheng misc QH426-470 misc cucumis anguria var. anguria misc complete chloroplast genome misc phylogenetic analysis misc cucurbitaceae misc Genetics The complete chloroplast genome of Cucumis anguria var. anguria (Cucurbitaceae) and its phylogenetic implication
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topic_title	QH426-470 The complete chloroplast genome of Cucumis anguria var. anguria (Cucurbitaceae) and its phylogenetic implication cucumis anguria var. anguria complete chloroplast genome phylogenetic analysis cucurbitaceae
topic	misc QH426-470 misc cucumis anguria var. anguria misc complete chloroplast genome misc phylogenetic analysis misc cucurbitaceae misc Genetics
topic_unstemmed	misc QH426-470 misc cucumis anguria var. anguria misc complete chloroplast genome misc phylogenetic analysis misc cucurbitaceae misc Genetics
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title	The complete chloroplast genome of Cucumis anguria var. anguria (Cucurbitaceae) and its phylogenetic implication
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title_full	The complete chloroplast genome of Cucumis anguria var. anguria (Cucurbitaceae) and its phylogenetic implication
author_sort	Hong Cheng
journal	Mitochondrial DNA. Part B. Resources
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title_sort	complete chloroplast genome of cucumis anguria var. anguria (cucurbitaceae) and its phylogenetic implication
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title_auth	The complete chloroplast genome of Cucumis anguria var. anguria (Cucurbitaceae) and its phylogenetic implication
abstract	The genus Cucumis contains 52 species, including two economically significant crops, cucumber and melon, as well as other important species. Cucumis anguria var. anguria is a wild relative of C. melon, native to Africa. Cucumis anguria is rich in vitamins and minerals in gherkin fruits and carries broad-spectrum resistance to multiplex biotic and abiotic stress, such as powdery mildew, fusarium wilt, and meloidogyn incognita. Cucumis anguria provides a valuable gene pool for crop improvement of Cucumis crops. In this study, the complete chloroplast (cp) genome sequence of C. anguria was determined using next-generation sequencing. The entire cp genome was determined to be 156,577 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 85,971 and 18,100 bp, respectively, which were separated by a pair of 26,253 bp inverted repeat (IR) regions. The genome contained 134 genes, including 88 protein-coding genes, 37 tRNA genes, 8 rRNA genes and 1 pseudogene infA. The overall GC content of the genome is 37.0%. A phylogenetic tree reconstructed by 48 chloroplast genomes reveals that C. anguria is a separate branch in Cucumis.
abstractGer	The genus Cucumis contains 52 species, including two economically significant crops, cucumber and melon, as well as other important species. Cucumis anguria var. anguria is a wild relative of C. melon, native to Africa. Cucumis anguria is rich in vitamins and minerals in gherkin fruits and carries broad-spectrum resistance to multiplex biotic and abiotic stress, such as powdery mildew, fusarium wilt, and meloidogyn incognita. Cucumis anguria provides a valuable gene pool for crop improvement of Cucumis crops. In this study, the complete chloroplast (cp) genome sequence of C. anguria was determined using next-generation sequencing. The entire cp genome was determined to be 156,577 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 85,971 and 18,100 bp, respectively, which were separated by a pair of 26,253 bp inverted repeat (IR) regions. The genome contained 134 genes, including 88 protein-coding genes, 37 tRNA genes, 8 rRNA genes and 1 pseudogene infA. The overall GC content of the genome is 37.0%. A phylogenetic tree reconstructed by 48 chloroplast genomes reveals that C. anguria is a separate branch in Cucumis.
abstract_unstemmed	The genus Cucumis contains 52 species, including two economically significant crops, cucumber and melon, as well as other important species. Cucumis anguria var. anguria is a wild relative of C. melon, native to Africa. Cucumis anguria is rich in vitamins and minerals in gherkin fruits and carries broad-spectrum resistance to multiplex biotic and abiotic stress, such as powdery mildew, fusarium wilt, and meloidogyn incognita. Cucumis anguria provides a valuable gene pool for crop improvement of Cucumis crops. In this study, the complete chloroplast (cp) genome sequence of C. anguria was determined using next-generation sequencing. The entire cp genome was determined to be 156,577 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 85,971 and 18,100 bp, respectively, which were separated by a pair of 26,253 bp inverted repeat (IR) regions. The genome contained 134 genes, including 88 protein-coding genes, 37 tRNA genes, 8 rRNA genes and 1 pseudogene infA. The overall GC content of the genome is 37.0%. A phylogenetic tree reconstructed by 48 chloroplast genomes reveals that C. anguria is a separate branch in Cucumis.
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title_short	The complete chloroplast genome of Cucumis anguria var. anguria (Cucurbitaceae) and its phylogenetic implication
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The complete chloroplast genome of Cucumis anguria var. anguria (Cucurbitaceae) and its phylogenetic implication

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