Differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (Xanthoceras sorbifolium), an oil-producing tree with significant deployment values
Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamen...
Ausführliche Beschreibung
Autor*in: |
Tian-Le Shi [verfasserIn] Hai-Yao Ma [verfasserIn] Xinrui Wang [verfasserIn] Hui Liu [verfasserIn] Xue-Mei Yan [verfasserIn] Xue-Chan Tian [verfasserIn] Zhi-Chao Li [verfasserIn] Yu-Tao Bao [verfasserIn] Zhao-Yang Chen [verfasserIn] Shi-Wei Zhao [verfasserIn] Qiuhong Xiang [verfasserIn] Kai-Hua Jia [verfasserIn] Shuai Nie [verfasserIn] Wenbin Guan [verfasserIn] Jian-Feng Mao [verfasserIn] |
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E-Artikel |
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Sprache: |
Englisch |
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2024 |
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Übergeordnetes Werk: |
In: Frontiers in Plant Science - Frontiers Media S.A., 2011, 14(2024) |
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Übergeordnetes Werk: |
volume:14 ; year:2024 |
Links: |
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DOI / URN: |
10.3389/fpls.2023.1297817 |
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Katalog-ID: |
DOAJ097497762 |
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520 | |a Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamental biological questions regarding its very long-chain fatty acid (VLCFA) biosynthesis pathway remain largely unknown. In this study, we reconstructed the VLCFA biosynthesis pathway and annotated 137 genes encoding relevant enzymes. We identified four oleosin genes that package triacylglycerols (TAGs) and are specifically expressed in fruits, likely playing key roles in yellowhorn oil production. Especially, by examining time-ordered gene co-expression network (TO-GCN) constructed from fruit and leaf developments, we identified key enzymatic genes and potential regulatory transcription factors involved in VLCFA synthesis. In fruits, we further inferred a hierarchical regulatory network with MYB-related (XS03G0296800) and B3 (XS02G0057600) transcription factors as top-tier regulators, providing clues into factors controlling carbon flux into fatty acids. Our results offer new insights into key genes and transcriptional regulators governing fatty acid production in yellowhorn, laying the foundation for efforts to optimize oil content and fatty acid composition. Moreover, the gene expression patterns and putative regulatory relationships identified here will inform metabolic engineering and molecular breeding approaches tailored to meet biofuel and bioproduct demands. | ||
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10.3389/fpls.2023.1297817 doi (DE-627)DOAJ097497762 (DE-599)DOAJe303158deff74c82a93b65c89da735a7 DE-627 ger DE-627 rakwb eng SB1-1110 Tian-Le Shi verfasserin aut Differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (Xanthoceras sorbifolium), an oil-producing tree with significant deployment values 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamental biological questions regarding its very long-chain fatty acid (VLCFA) biosynthesis pathway remain largely unknown. In this study, we reconstructed the VLCFA biosynthesis pathway and annotated 137 genes encoding relevant enzymes. We identified four oleosin genes that package triacylglycerols (TAGs) and are specifically expressed in fruits, likely playing key roles in yellowhorn oil production. Especially, by examining time-ordered gene co-expression network (TO-GCN) constructed from fruit and leaf developments, we identified key enzymatic genes and potential regulatory transcription factors involved in VLCFA synthesis. In fruits, we further inferred a hierarchical regulatory network with MYB-related (XS03G0296800) and B3 (XS02G0057600) transcription factors as top-tier regulators, providing clues into factors controlling carbon flux into fatty acids. Our results offer new insights into key genes and transcriptional regulators governing fatty acid production in yellowhorn, laying the foundation for efforts to optimize oil content and fatty acid composition. Moreover, the gene expression patterns and putative regulatory relationships identified here will inform metabolic engineering and molecular breeding approaches tailored to meet biofuel and bioproduct demands. fatty acid biosynthesis time-ordered gene co-expression network (TO-GCN) oleosins fruit and leaf development yellowhorn Plant culture Tian-Le Shi verfasserin aut Hai-Yao Ma verfasserin aut Hai-Yao Ma verfasserin aut Xinrui Wang verfasserin aut Xinrui Wang verfasserin aut Hui Liu verfasserin aut Hui Liu verfasserin aut Xue-Mei Yan verfasserin aut Xue-Mei Yan verfasserin aut Xue-Chan Tian verfasserin aut Xue-Chan Tian verfasserin aut Zhi-Chao Li verfasserin aut Zhi-Chao Li verfasserin aut Yu-Tao Bao verfasserin aut Yu-Tao Bao verfasserin aut Zhao-Yang Chen verfasserin aut Zhao-Yang Chen verfasserin aut Shi-Wei Zhao verfasserin aut Shi-Wei Zhao verfasserin aut Qiuhong Xiang verfasserin aut Qiuhong Xiang verfasserin aut Kai-Hua Jia verfasserin aut Shuai Nie verfasserin aut Shuai Nie verfasserin aut Wenbin Guan verfasserin aut Wenbin Guan verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2024) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2024 https://doi.org/10.3389/fpls.2023.1297817 kostenfrei https://doaj.org/article/e303158deff74c82a93b65c89da735a7 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1297817/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2024 |
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10.3389/fpls.2023.1297817 doi (DE-627)DOAJ097497762 (DE-599)DOAJe303158deff74c82a93b65c89da735a7 DE-627 ger DE-627 rakwb eng SB1-1110 Tian-Le Shi verfasserin aut Differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (Xanthoceras sorbifolium), an oil-producing tree with significant deployment values 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamental biological questions regarding its very long-chain fatty acid (VLCFA) biosynthesis pathway remain largely unknown. In this study, we reconstructed the VLCFA biosynthesis pathway and annotated 137 genes encoding relevant enzymes. We identified four oleosin genes that package triacylglycerols (TAGs) and are specifically expressed in fruits, likely playing key roles in yellowhorn oil production. Especially, by examining time-ordered gene co-expression network (TO-GCN) constructed from fruit and leaf developments, we identified key enzymatic genes and potential regulatory transcription factors involved in VLCFA synthesis. In fruits, we further inferred a hierarchical regulatory network with MYB-related (XS03G0296800) and B3 (XS02G0057600) transcription factors as top-tier regulators, providing clues into factors controlling carbon flux into fatty acids. Our results offer new insights into key genes and transcriptional regulators governing fatty acid production in yellowhorn, laying the foundation for efforts to optimize oil content and fatty acid composition. Moreover, the gene expression patterns and putative regulatory relationships identified here will inform metabolic engineering and molecular breeding approaches tailored to meet biofuel and bioproduct demands. fatty acid biosynthesis time-ordered gene co-expression network (TO-GCN) oleosins fruit and leaf development yellowhorn Plant culture Tian-Le Shi verfasserin aut Hai-Yao Ma verfasserin aut Hai-Yao Ma verfasserin aut Xinrui Wang verfasserin aut Xinrui Wang verfasserin aut Hui Liu verfasserin aut Hui Liu verfasserin aut Xue-Mei Yan verfasserin aut Xue-Mei Yan verfasserin aut Xue-Chan Tian verfasserin aut Xue-Chan Tian verfasserin aut Zhi-Chao Li verfasserin aut Zhi-Chao Li verfasserin aut Yu-Tao Bao verfasserin aut Yu-Tao Bao verfasserin aut Zhao-Yang Chen verfasserin aut Zhao-Yang Chen verfasserin aut Shi-Wei Zhao verfasserin aut Shi-Wei Zhao verfasserin aut Qiuhong Xiang verfasserin aut Qiuhong Xiang verfasserin aut Kai-Hua Jia verfasserin aut Shuai Nie verfasserin aut Shuai Nie verfasserin aut Wenbin Guan verfasserin aut Wenbin Guan verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2024) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2024 https://doi.org/10.3389/fpls.2023.1297817 kostenfrei https://doaj.org/article/e303158deff74c82a93b65c89da735a7 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1297817/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2024 |
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10.3389/fpls.2023.1297817 doi (DE-627)DOAJ097497762 (DE-599)DOAJe303158deff74c82a93b65c89da735a7 DE-627 ger DE-627 rakwb eng SB1-1110 Tian-Le Shi verfasserin aut Differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (Xanthoceras sorbifolium), an oil-producing tree with significant deployment values 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamental biological questions regarding its very long-chain fatty acid (VLCFA) biosynthesis pathway remain largely unknown. In this study, we reconstructed the VLCFA biosynthesis pathway and annotated 137 genes encoding relevant enzymes. We identified four oleosin genes that package triacylglycerols (TAGs) and are specifically expressed in fruits, likely playing key roles in yellowhorn oil production. Especially, by examining time-ordered gene co-expression network (TO-GCN) constructed from fruit and leaf developments, we identified key enzymatic genes and potential regulatory transcription factors involved in VLCFA synthesis. In fruits, we further inferred a hierarchical regulatory network with MYB-related (XS03G0296800) and B3 (XS02G0057600) transcription factors as top-tier regulators, providing clues into factors controlling carbon flux into fatty acids. Our results offer new insights into key genes and transcriptional regulators governing fatty acid production in yellowhorn, laying the foundation for efforts to optimize oil content and fatty acid composition. Moreover, the gene expression patterns and putative regulatory relationships identified here will inform metabolic engineering and molecular breeding approaches tailored to meet biofuel and bioproduct demands. fatty acid biosynthesis time-ordered gene co-expression network (TO-GCN) oleosins fruit and leaf development yellowhorn Plant culture Tian-Le Shi verfasserin aut Hai-Yao Ma verfasserin aut Hai-Yao Ma verfasserin aut Xinrui Wang verfasserin aut Xinrui Wang verfasserin aut Hui Liu verfasserin aut Hui Liu verfasserin aut Xue-Mei Yan verfasserin aut Xue-Mei Yan verfasserin aut Xue-Chan Tian verfasserin aut Xue-Chan Tian verfasserin aut Zhi-Chao Li verfasserin aut Zhi-Chao Li verfasserin aut Yu-Tao Bao verfasserin aut Yu-Tao Bao verfasserin aut Zhao-Yang Chen verfasserin aut Zhao-Yang Chen verfasserin aut Shi-Wei Zhao verfasserin aut Shi-Wei Zhao verfasserin aut Qiuhong Xiang verfasserin aut Qiuhong Xiang verfasserin aut Kai-Hua Jia verfasserin aut Shuai Nie verfasserin aut Shuai Nie verfasserin aut Wenbin Guan verfasserin aut Wenbin Guan verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2024) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2024 https://doi.org/10.3389/fpls.2023.1297817 kostenfrei https://doaj.org/article/e303158deff74c82a93b65c89da735a7 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1297817/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2024 |
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10.3389/fpls.2023.1297817 doi (DE-627)DOAJ097497762 (DE-599)DOAJe303158deff74c82a93b65c89da735a7 DE-627 ger DE-627 rakwb eng SB1-1110 Tian-Le Shi verfasserin aut Differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (Xanthoceras sorbifolium), an oil-producing tree with significant deployment values 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamental biological questions regarding its very long-chain fatty acid (VLCFA) biosynthesis pathway remain largely unknown. In this study, we reconstructed the VLCFA biosynthesis pathway and annotated 137 genes encoding relevant enzymes. We identified four oleosin genes that package triacylglycerols (TAGs) and are specifically expressed in fruits, likely playing key roles in yellowhorn oil production. Especially, by examining time-ordered gene co-expression network (TO-GCN) constructed from fruit and leaf developments, we identified key enzymatic genes and potential regulatory transcription factors involved in VLCFA synthesis. In fruits, we further inferred a hierarchical regulatory network with MYB-related (XS03G0296800) and B3 (XS02G0057600) transcription factors as top-tier regulators, providing clues into factors controlling carbon flux into fatty acids. Our results offer new insights into key genes and transcriptional regulators governing fatty acid production in yellowhorn, laying the foundation for efforts to optimize oil content and fatty acid composition. Moreover, the gene expression patterns and putative regulatory relationships identified here will inform metabolic engineering and molecular breeding approaches tailored to meet biofuel and bioproduct demands. fatty acid biosynthesis time-ordered gene co-expression network (TO-GCN) oleosins fruit and leaf development yellowhorn Plant culture Tian-Le Shi verfasserin aut Hai-Yao Ma verfasserin aut Hai-Yao Ma verfasserin aut Xinrui Wang verfasserin aut Xinrui Wang verfasserin aut Hui Liu verfasserin aut Hui Liu verfasserin aut Xue-Mei Yan verfasserin aut Xue-Mei Yan verfasserin aut Xue-Chan Tian verfasserin aut Xue-Chan Tian verfasserin aut Zhi-Chao Li verfasserin aut Zhi-Chao Li verfasserin aut Yu-Tao Bao verfasserin aut Yu-Tao Bao verfasserin aut Zhao-Yang Chen verfasserin aut Zhao-Yang Chen verfasserin aut Shi-Wei Zhao verfasserin aut Shi-Wei Zhao verfasserin aut Qiuhong Xiang verfasserin aut Qiuhong Xiang verfasserin aut Kai-Hua Jia verfasserin aut Shuai Nie verfasserin aut Shuai Nie verfasserin aut Wenbin Guan verfasserin aut Wenbin Guan verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2024) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2024 https://doi.org/10.3389/fpls.2023.1297817 kostenfrei https://doaj.org/article/e303158deff74c82a93b65c89da735a7 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1297817/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2024 |
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10.3389/fpls.2023.1297817 doi (DE-627)DOAJ097497762 (DE-599)DOAJe303158deff74c82a93b65c89da735a7 DE-627 ger DE-627 rakwb eng SB1-1110 Tian-Le Shi verfasserin aut Differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (Xanthoceras sorbifolium), an oil-producing tree with significant deployment values 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamental biological questions regarding its very long-chain fatty acid (VLCFA) biosynthesis pathway remain largely unknown. In this study, we reconstructed the VLCFA biosynthesis pathway and annotated 137 genes encoding relevant enzymes. We identified four oleosin genes that package triacylglycerols (TAGs) and are specifically expressed in fruits, likely playing key roles in yellowhorn oil production. Especially, by examining time-ordered gene co-expression network (TO-GCN) constructed from fruit and leaf developments, we identified key enzymatic genes and potential regulatory transcription factors involved in VLCFA synthesis. In fruits, we further inferred a hierarchical regulatory network with MYB-related (XS03G0296800) and B3 (XS02G0057600) transcription factors as top-tier regulators, providing clues into factors controlling carbon flux into fatty acids. Our results offer new insights into key genes and transcriptional regulators governing fatty acid production in yellowhorn, laying the foundation for efforts to optimize oil content and fatty acid composition. Moreover, the gene expression patterns and putative regulatory relationships identified here will inform metabolic engineering and molecular breeding approaches tailored to meet biofuel and bioproduct demands. fatty acid biosynthesis time-ordered gene co-expression network (TO-GCN) oleosins fruit and leaf development yellowhorn Plant culture Tian-Le Shi verfasserin aut Hai-Yao Ma verfasserin aut Hai-Yao Ma verfasserin aut Xinrui Wang verfasserin aut Xinrui Wang verfasserin aut Hui Liu verfasserin aut Hui Liu verfasserin aut Xue-Mei Yan verfasserin aut Xue-Mei Yan verfasserin aut Xue-Chan Tian verfasserin aut Xue-Chan Tian verfasserin aut Zhi-Chao Li verfasserin aut Zhi-Chao Li verfasserin aut Yu-Tao Bao verfasserin aut Yu-Tao Bao verfasserin aut Zhao-Yang Chen verfasserin aut Zhao-Yang Chen verfasserin aut Shi-Wei Zhao verfasserin aut Shi-Wei Zhao verfasserin aut Qiuhong Xiang verfasserin aut Qiuhong Xiang verfasserin aut Kai-Hua Jia verfasserin aut Shuai Nie verfasserin aut Shuai Nie verfasserin aut Wenbin Guan verfasserin aut Wenbin Guan verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut Jian-Feng Mao verfasserin aut In Frontiers in Plant Science Frontiers Media S.A., 2011 14(2024) (DE-627)662359240 (DE-600)2613694-6 1664462X nnns volume:14 year:2024 https://doi.org/10.3389/fpls.2023.1297817 kostenfrei https://doaj.org/article/e303158deff74c82a93b65c89da735a7 kostenfrei https://www.frontiersin.org/articles/10.3389/fpls.2023.1297817/full kostenfrei https://doaj.org/toc/1664-462X Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2024 |
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Tian-Le Shi @@aut@@ Hai-Yao Ma @@aut@@ Xinrui Wang @@aut@@ Hui Liu @@aut@@ Xue-Mei Yan @@aut@@ Xue-Chan Tian @@aut@@ Zhi-Chao Li @@aut@@ Yu-Tao Bao @@aut@@ Zhao-Yang Chen @@aut@@ Shi-Wei Zhao @@aut@@ Qiuhong Xiang @@aut@@ Kai-Hua Jia @@aut@@ Shuai Nie @@aut@@ Wenbin Guan @@aut@@ Jian-Feng Mao @@aut@@ |
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SB1-1110 Differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (Xanthoceras sorbifolium), an oil-producing tree with significant deployment values fatty acid biosynthesis time-ordered gene co-expression network (TO-GCN) oleosins fruit and leaf development yellowhorn |
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differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (xanthoceras sorbifolium), an oil-producing tree with significant deployment values |
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Differential gene expression and potential regulatory network of fatty acid biosynthesis during fruit and leaf development in yellowhorn (Xanthoceras sorbifolium), an oil-producing tree with significant deployment values |
abstract |
Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamental biological questions regarding its very long-chain fatty acid (VLCFA) biosynthesis pathway remain largely unknown. In this study, we reconstructed the VLCFA biosynthesis pathway and annotated 137 genes encoding relevant enzymes. We identified four oleosin genes that package triacylglycerols (TAGs) and are specifically expressed in fruits, likely playing key roles in yellowhorn oil production. Especially, by examining time-ordered gene co-expression network (TO-GCN) constructed from fruit and leaf developments, we identified key enzymatic genes and potential regulatory transcription factors involved in VLCFA synthesis. In fruits, we further inferred a hierarchical regulatory network with MYB-related (XS03G0296800) and B3 (XS02G0057600) transcription factors as top-tier regulators, providing clues into factors controlling carbon flux into fatty acids. Our results offer new insights into key genes and transcriptional regulators governing fatty acid production in yellowhorn, laying the foundation for efforts to optimize oil content and fatty acid composition. Moreover, the gene expression patterns and putative regulatory relationships identified here will inform metabolic engineering and molecular breeding approaches tailored to meet biofuel and bioproduct demands. |
abstractGer |
Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamental biological questions regarding its very long-chain fatty acid (VLCFA) biosynthesis pathway remain largely unknown. In this study, we reconstructed the VLCFA biosynthesis pathway and annotated 137 genes encoding relevant enzymes. We identified four oleosin genes that package triacylglycerols (TAGs) and are specifically expressed in fruits, likely playing key roles in yellowhorn oil production. Especially, by examining time-ordered gene co-expression network (TO-GCN) constructed from fruit and leaf developments, we identified key enzymatic genes and potential regulatory transcription factors involved in VLCFA synthesis. In fruits, we further inferred a hierarchical regulatory network with MYB-related (XS03G0296800) and B3 (XS02G0057600) transcription factors as top-tier regulators, providing clues into factors controlling carbon flux into fatty acids. Our results offer new insights into key genes and transcriptional regulators governing fatty acid production in yellowhorn, laying the foundation for efforts to optimize oil content and fatty acid composition. Moreover, the gene expression patterns and putative regulatory relationships identified here will inform metabolic engineering and molecular breeding approaches tailored to meet biofuel and bioproduct demands. |
abstract_unstemmed |
Xanthoceras sorbifolium (yellowhorn) is a woody oil plant with super stress resistance and excellent oil characteristics. The yellowhorn oil can be used as biofuel and edible oil with high nutritional and medicinal value. However, genetic studies on yellowhorn are just in the beginning, and fundamental biological questions regarding its very long-chain fatty acid (VLCFA) biosynthesis pathway remain largely unknown. In this study, we reconstructed the VLCFA biosynthesis pathway and annotated 137 genes encoding relevant enzymes. We identified four oleosin genes that package triacylglycerols (TAGs) and are specifically expressed in fruits, likely playing key roles in yellowhorn oil production. Especially, by examining time-ordered gene co-expression network (TO-GCN) constructed from fruit and leaf developments, we identified key enzymatic genes and potential regulatory transcription factors involved in VLCFA synthesis. In fruits, we further inferred a hierarchical regulatory network with MYB-related (XS03G0296800) and B3 (XS02G0057600) transcription factors as top-tier regulators, providing clues into factors controlling carbon flux into fatty acids. Our results offer new insights into key genes and transcriptional regulators governing fatty acid production in yellowhorn, laying the foundation for efforts to optimize oil content and fatty acid composition. Moreover, the gene expression patterns and putative regulatory relationships identified here will inform metabolic engineering and molecular breeding approaches tailored to meet biofuel and bioproduct demands. |
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