Bioinformatic Analysis of the BTB Gene Family in <i<Paulownia fortunei</i< and Functional Characterization in Response to Abiotic and Biotic Stresses

To learn about the gene structure, phylogenetic evolution, and function under biotic and abiotic stresses of BTB (Bric-a-Brac/Tramtrack/Broad Complex) genes in <i<Paulownia fortunei</i<, a whole-genome sequence evaluation was carried out, and a total of 62 <i<PfBTB</i< genes...
Ausführliche Beschreibung

Gespeichert in:

Autor*in:	Peipei Zhu [verfasserIn] Yujie Fan [verfasserIn] Pingluo Xu [verfasserIn] Guoqiang Fan [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	BTB miRNA gene expression Paulownia witches’ broom environmental responses

Übergeordnetes Werk:	In: Plants - MDPI AG, 2013, 12(2023), 24, p 4144
Übergeordnetes Werk:	volume:12 ; year:2023 ; number:24, p 4144

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/plants12244144

Katalog-ID:	DOAJ097983292

Internformat


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520			\|a To learn about the gene structure, phylogenetic evolution, and function under biotic and abiotic stresses of BTB (Bric-a-Brac/Tramtrack/Broad Complex) genes in <i<Paulownia fortunei</i<, a whole-genome sequence evaluation was carried out, and a total of 62 <i<PfBTB</i< genes were identified. The phylogenetic analysis showed that PfBTB proteins are divided into eight groups, and these proteins are highly conserved. <i<PfBTB</i< genes were unevenly distributed on 17 chromosomes. The colinearity analysis found that fragment replication and tandem replication are the main modes of gene amplification in the <i<PfBTB</i< family. The analysis of <i<cis</i<-acting elements suggests that <i<PfBTB</i< genes may be involved in a variety of biological processes. The transcriptomic analysis results showed that <i<PfBTB3/12/14/16/19/36/44</i< responded to Paulownia witches’ broom (PaWB), while <i<PfBTB1/4/17/43</i< responded to drought stress, and the RT-qPCR results further support the reliability of transcriptome data. In addition, the association analysis between miRNA and transcriptome revealed a 91-pair targeting relationship between miRNAs and <i<PfBTBs</i<. In conclusion, the <i<BTB</i< genes in <i<Paulownia</i< are systematically identified in this research. This work provides useful knowledge to more fully appreciate the potential functions of these genes and their possible roles in the occurrence of PaWB and in response to stress.
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allfieldsSound	10.3390/plants12244144 doi (DE-627)DOAJ097983292 (DE-599)DOAJ3a45de553acd4e9bbcfa993b323be513 DE-627 ger DE-627 rakwb eng QK1-989 Peipei Zhu verfasserin aut Bioinformatic Analysis of the BTB Gene Family in <i<Paulownia fortunei</i< and Functional Characterization in Response to Abiotic and Biotic Stresses 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier To learn about the gene structure, phylogenetic evolution, and function under biotic and abiotic stresses of BTB (Bric-a-Brac/Tramtrack/Broad Complex) genes in <i<Paulownia fortunei</i<, a whole-genome sequence evaluation was carried out, and a total of 62 <i<PfBTB</i< genes were identified. The phylogenetic analysis showed that PfBTB proteins are divided into eight groups, and these proteins are highly conserved. <i<PfBTB</i< genes were unevenly distributed on 17 chromosomes. The colinearity analysis found that fragment replication and tandem replication are the main modes of gene amplification in the <i<PfBTB</i< family. The analysis of <i<cis</i<-acting elements suggests that <i<PfBTB</i< genes may be involved in a variety of biological processes. The transcriptomic analysis results showed that <i<PfBTB3/12/14/16/19/36/44</i< responded to Paulownia witches’ broom (PaWB), while <i<PfBTB1/4/17/43</i< responded to drought stress, and the RT-qPCR results further support the reliability of transcriptome data. In addition, the association analysis between miRNA and transcriptome revealed a 91-pair targeting relationship between miRNAs and <i<PfBTBs</i<. In conclusion, the <i<BTB</i< genes in <i<Paulownia</i< are systematically identified in this research. This work provides useful knowledge to more fully appreciate the potential functions of these genes and their possible roles in the occurrence of PaWB and in response to stress. <i<Paulownia fortunei</i< BTB miRNA gene expression Paulownia witches’ broom environmental responses Botany Yujie Fan verfasserin aut Pingluo Xu verfasserin aut Guoqiang Fan verfasserin aut In Plants MDPI AG, 2013 12(2023), 24, p 4144 (DE-627)737288345 (DE-600)2704341-1 22237747 nnns volume:12 year:2023 number:24, p 4144 https://doi.org/10.3390/plants12244144 kostenfrei https://doaj.org/article/3a45de553acd4e9bbcfa993b323be513 kostenfrei https://www.mdpi.com/2223-7747/12/24/4144 kostenfrei https://doaj.org/toc/2223-7747 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 12 2023 24, p 4144
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callnumber-first	Q - Science
author	Peipei Zhu
spellingShingle	Peipei Zhu misc QK1-989 misc <i<Paulownia fortunei</i< misc BTB misc miRNA misc gene expression misc Paulownia witches’ broom misc environmental responses misc Botany Bioinformatic Analysis of the BTB Gene Family in <i<Paulownia fortunei</i< and Functional Characterization in Response to Abiotic and Biotic Stresses
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topic_title	QK1-989 Bioinformatic Analysis of the BTB Gene Family in <i<Paulownia fortunei</i< and Functional Characterization in Response to Abiotic and Biotic Stresses <i<Paulownia fortunei</i< BTB miRNA gene expression Paulownia witches’ broom environmental responses
topic	misc QK1-989 misc <i<Paulownia fortunei</i< misc BTB misc miRNA misc gene expression misc Paulownia witches’ broom misc environmental responses misc Botany
topic_unstemmed	misc QK1-989 misc <i<Paulownia fortunei</i< misc BTB misc miRNA misc gene expression misc Paulownia witches’ broom misc environmental responses misc Botany
topic_browse	misc QK1-989 misc <i<Paulownia fortunei</i< misc BTB misc miRNA misc gene expression misc Paulownia witches’ broom misc environmental responses misc Botany
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title	Bioinformatic Analysis of the BTB Gene Family in <i<Paulownia fortunei</i< and Functional Characterization in Response to Abiotic and Biotic Stresses
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title_full	Bioinformatic Analysis of the BTB Gene Family in <i<Paulownia fortunei</i< and Functional Characterization in Response to Abiotic and Biotic Stresses
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author_browse	Peipei Zhu Yujie Fan Pingluo Xu Guoqiang Fan
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title_sort	bioinformatic analysis of the btb gene family in <i<paulownia fortunei</i< and functional characterization in response to abiotic and biotic stresses
callnumber	QK1-989
title_auth	Bioinformatic Analysis of the BTB Gene Family in <i<Paulownia fortunei</i< and Functional Characterization in Response to Abiotic and Biotic Stresses
abstract	To learn about the gene structure, phylogenetic evolution, and function under biotic and abiotic stresses of BTB (Bric-a-Brac/Tramtrack/Broad Complex) genes in <i<Paulownia fortunei</i<, a whole-genome sequence evaluation was carried out, and a total of 62 <i<PfBTB</i< genes were identified. The phylogenetic analysis showed that PfBTB proteins are divided into eight groups, and these proteins are highly conserved. <i<PfBTB</i< genes were unevenly distributed on 17 chromosomes. The colinearity analysis found that fragment replication and tandem replication are the main modes of gene amplification in the <i<PfBTB</i< family. The analysis of <i<cis</i<-acting elements suggests that <i<PfBTB</i< genes may be involved in a variety of biological processes. The transcriptomic analysis results showed that <i<PfBTB3/12/14/16/19/36/44</i< responded to Paulownia witches’ broom (PaWB), while <i<PfBTB1/4/17/43</i< responded to drought stress, and the RT-qPCR results further support the reliability of transcriptome data. In addition, the association analysis between miRNA and transcriptome revealed a 91-pair targeting relationship between miRNAs and <i<PfBTBs</i<. In conclusion, the <i<BTB</i< genes in <i<Paulownia</i< are systematically identified in this research. This work provides useful knowledge to more fully appreciate the potential functions of these genes and their possible roles in the occurrence of PaWB and in response to stress.
abstractGer	To learn about the gene structure, phylogenetic evolution, and function under biotic and abiotic stresses of BTB (Bric-a-Brac/Tramtrack/Broad Complex) genes in <i<Paulownia fortunei</i<, a whole-genome sequence evaluation was carried out, and a total of 62 <i<PfBTB</i< genes were identified. The phylogenetic analysis showed that PfBTB proteins are divided into eight groups, and these proteins are highly conserved. <i<PfBTB</i< genes were unevenly distributed on 17 chromosomes. The colinearity analysis found that fragment replication and tandem replication are the main modes of gene amplification in the <i<PfBTB</i< family. The analysis of <i<cis</i<-acting elements suggests that <i<PfBTB</i< genes may be involved in a variety of biological processes. The transcriptomic analysis results showed that <i<PfBTB3/12/14/16/19/36/44</i< responded to Paulownia witches’ broom (PaWB), while <i<PfBTB1/4/17/43</i< responded to drought stress, and the RT-qPCR results further support the reliability of transcriptome data. In addition, the association analysis between miRNA and transcriptome revealed a 91-pair targeting relationship between miRNAs and <i<PfBTBs</i<. In conclusion, the <i<BTB</i< genes in <i<Paulownia</i< are systematically identified in this research. This work provides useful knowledge to more fully appreciate the potential functions of these genes and their possible roles in the occurrence of PaWB and in response to stress.
abstract_unstemmed	To learn about the gene structure, phylogenetic evolution, and function under biotic and abiotic stresses of BTB (Bric-a-Brac/Tramtrack/Broad Complex) genes in <i<Paulownia fortunei</i<, a whole-genome sequence evaluation was carried out, and a total of 62 <i<PfBTB</i< genes were identified. The phylogenetic analysis showed that PfBTB proteins are divided into eight groups, and these proteins are highly conserved. <i<PfBTB</i< genes were unevenly distributed on 17 chromosomes. The colinearity analysis found that fragment replication and tandem replication are the main modes of gene amplification in the <i<PfBTB</i< family. The analysis of <i<cis</i<-acting elements suggests that <i<PfBTB</i< genes may be involved in a variety of biological processes. The transcriptomic analysis results showed that <i<PfBTB3/12/14/16/19/36/44</i< responded to Paulownia witches’ broom (PaWB), while <i<PfBTB1/4/17/43</i< responded to drought stress, and the RT-qPCR results further support the reliability of transcriptome data. In addition, the association analysis between miRNA and transcriptome revealed a 91-pair targeting relationship between miRNAs and <i<PfBTBs</i<. In conclusion, the <i<BTB</i< genes in <i<Paulownia</i< are systematically identified in this research. This work provides useful knowledge to more fully appreciate the potential functions of these genes and their possible roles in the occurrence of PaWB and in response to stress.
collection_details	GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700
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title_short	Bioinformatic Analysis of the BTB Gene Family in <i<Paulownia fortunei</i< and Functional Characterization in Response to Abiotic and Biotic Stresses
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Bioinformatic Analysis of the BTB Gene Family in <i<Paulownia fortunei</i< and Functional Characterization in Response to Abiotic and Biotic Stresses

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