Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa

Lumpy skin disease virus (LSDV) has recently undergone rapid spread, now being reported from more than 80 countries, affecting predominantly cattle and to a lesser extent, water buffalo. This poxvirus was previously considered to be highly host-range restricted. However, there is an increasing numbe...
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Autor*in:	Antoinette van Schalkwyk [verfasserIn] Pravesh Kara [verfasserIn] Robert D. Last [verfasserIn] Marco Romito [verfasserIn] David B. Wallace [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2024

Schlagwörter:	lumpy skin disease virus springbok giraffe complete genome sequencing phylogenetics single nucleotide polymorphisms (SNPs)

Übergeordnetes Werk:	In: Viruses - MDPI AG, 2009, 16(2024), 2, p 172
Übergeordnetes Werk:	volume:16 ; year:2024 ; number:2, p 172

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/v16020172

Katalog-ID:	DOAJ098435477

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allfields	10.3390/v16020172 doi (DE-627)DOAJ098435477 (DE-599)DOAJe27b389b89904fdc9e174498c4f228f0 DE-627 ger DE-627 rakwb eng QR1-502 Antoinette van Schalkwyk verfasserin aut Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Lumpy skin disease virus (LSDV) has recently undergone rapid spread, now being reported from more than 80 countries, affecting predominantly cattle and to a lesser extent, water buffalo. This poxvirus was previously considered to be highly host-range restricted. However, there is an increasing number of published reports on the detection of the virus from different game animal species. The virus has not only been shown to infect a wide range of game species under experimental conditions, but has also been naturally detected in oryx, giraffe, camels and gazelle. In addition, clinical lumpy skin disease has previously been described in springbok (<i<Antidorcas marsupialis</i<), an African antelope species, in South Africa. This report describes the characterization of lumpy skin disease virus belonging to cluster 1.2, from field samples from springbok, impala (<i<Aepyceros melampus</i<) and a giraffe (<i<Giraffa camelopardalis</i<) in South Africa using PCR, Sanger and whole genome sequencing. Most of these samples were submitted from wild animals in nature reserves or game parks, indicating that the disease is not restricted to captive-bred animals on game farms or zoological gardens. The potential role of wildlife species in the transmission and maintenance of LSDV is further discussed and requires continuing investigation, as the virus and disease may pose a serious threat to endangered species. lumpy skin disease virus springbok giraffe complete genome sequencing phylogenetics single nucleotide polymorphisms (SNPs) Microbiology Pravesh Kara verfasserin aut Robert D. Last verfasserin aut Marco Romito verfasserin aut David B. Wallace verfasserin aut In Viruses MDPI AG, 2009 16(2024), 2, p 172 (DE-627)609775871 (DE-600)2516098-9 19994915 nnns volume:16 year:2024 number:2, p 172 https://doi.org/10.3390/v16020172 kostenfrei https://doaj.org/article/e27b389b89904fdc9e174498c4f228f0 kostenfrei https://www.mdpi.com/1999-4915/16/2/172 kostenfrei https://doaj.org/toc/1999-4915 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 16 2024 2, p 172
spelling	10.3390/v16020172 doi (DE-627)DOAJ098435477 (DE-599)DOAJe27b389b89904fdc9e174498c4f228f0 DE-627 ger DE-627 rakwb eng QR1-502 Antoinette van Schalkwyk verfasserin aut Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Lumpy skin disease virus (LSDV) has recently undergone rapid spread, now being reported from more than 80 countries, affecting predominantly cattle and to a lesser extent, water buffalo. This poxvirus was previously considered to be highly host-range restricted. However, there is an increasing number of published reports on the detection of the virus from different game animal species. The virus has not only been shown to infect a wide range of game species under experimental conditions, but has also been naturally detected in oryx, giraffe, camels and gazelle. In addition, clinical lumpy skin disease has previously been described in springbok (<i<Antidorcas marsupialis</i<), an African antelope species, in South Africa. This report describes the characterization of lumpy skin disease virus belonging to cluster 1.2, from field samples from springbok, impala (<i<Aepyceros melampus</i<) and a giraffe (<i<Giraffa camelopardalis</i<) in South Africa using PCR, Sanger and whole genome sequencing. Most of these samples were submitted from wild animals in nature reserves or game parks, indicating that the disease is not restricted to captive-bred animals on game farms or zoological gardens. The potential role of wildlife species in the transmission and maintenance of LSDV is further discussed and requires continuing investigation, as the virus and disease may pose a serious threat to endangered species. lumpy skin disease virus springbok giraffe complete genome sequencing phylogenetics single nucleotide polymorphisms (SNPs) Microbiology Pravesh Kara verfasserin aut Robert D. Last verfasserin aut Marco Romito verfasserin aut David B. Wallace verfasserin aut In Viruses MDPI AG, 2009 16(2024), 2, p 172 (DE-627)609775871 (DE-600)2516098-9 19994915 nnns volume:16 year:2024 number:2, p 172 https://doi.org/10.3390/v16020172 kostenfrei https://doaj.org/article/e27b389b89904fdc9e174498c4f228f0 kostenfrei https://www.mdpi.com/1999-4915/16/2/172 kostenfrei https://doaj.org/toc/1999-4915 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 16 2024 2, p 172
allfields_unstemmed	10.3390/v16020172 doi (DE-627)DOAJ098435477 (DE-599)DOAJe27b389b89904fdc9e174498c4f228f0 DE-627 ger DE-627 rakwb eng QR1-502 Antoinette van Schalkwyk verfasserin aut Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Lumpy skin disease virus (LSDV) has recently undergone rapid spread, now being reported from more than 80 countries, affecting predominantly cattle and to a lesser extent, water buffalo. This poxvirus was previously considered to be highly host-range restricted. However, there is an increasing number of published reports on the detection of the virus from different game animal species. The virus has not only been shown to infect a wide range of game species under experimental conditions, but has also been naturally detected in oryx, giraffe, camels and gazelle. In addition, clinical lumpy skin disease has previously been described in springbok (<i<Antidorcas marsupialis</i<), an African antelope species, in South Africa. This report describes the characterization of lumpy skin disease virus belonging to cluster 1.2, from field samples from springbok, impala (<i<Aepyceros melampus</i<) and a giraffe (<i<Giraffa camelopardalis</i<) in South Africa using PCR, Sanger and whole genome sequencing. Most of these samples were submitted from wild animals in nature reserves or game parks, indicating that the disease is not restricted to captive-bred animals on game farms or zoological gardens. The potential role of wildlife species in the transmission and maintenance of LSDV is further discussed and requires continuing investigation, as the virus and disease may pose a serious threat to endangered species. lumpy skin disease virus springbok giraffe complete genome sequencing phylogenetics single nucleotide polymorphisms (SNPs) Microbiology Pravesh Kara verfasserin aut Robert D. Last verfasserin aut Marco Romito verfasserin aut David B. Wallace verfasserin aut In Viruses MDPI AG, 2009 16(2024), 2, p 172 (DE-627)609775871 (DE-600)2516098-9 19994915 nnns volume:16 year:2024 number:2, p 172 https://doi.org/10.3390/v16020172 kostenfrei https://doaj.org/article/e27b389b89904fdc9e174498c4f228f0 kostenfrei https://www.mdpi.com/1999-4915/16/2/172 kostenfrei https://doaj.org/toc/1999-4915 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 16 2024 2, p 172
allfieldsGer	10.3390/v16020172 doi (DE-627)DOAJ098435477 (DE-599)DOAJe27b389b89904fdc9e174498c4f228f0 DE-627 ger DE-627 rakwb eng QR1-502 Antoinette van Schalkwyk verfasserin aut Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Lumpy skin disease virus (LSDV) has recently undergone rapid spread, now being reported from more than 80 countries, affecting predominantly cattle and to a lesser extent, water buffalo. This poxvirus was previously considered to be highly host-range restricted. However, there is an increasing number of published reports on the detection of the virus from different game animal species. The virus has not only been shown to infect a wide range of game species under experimental conditions, but has also been naturally detected in oryx, giraffe, camels and gazelle. In addition, clinical lumpy skin disease has previously been described in springbok (<i<Antidorcas marsupialis</i<), an African antelope species, in South Africa. This report describes the characterization of lumpy skin disease virus belonging to cluster 1.2, from field samples from springbok, impala (<i<Aepyceros melampus</i<) and a giraffe (<i<Giraffa camelopardalis</i<) in South Africa using PCR, Sanger and whole genome sequencing. Most of these samples were submitted from wild animals in nature reserves or game parks, indicating that the disease is not restricted to captive-bred animals on game farms or zoological gardens. The potential role of wildlife species in the transmission and maintenance of LSDV is further discussed and requires continuing investigation, as the virus and disease may pose a serious threat to endangered species. lumpy skin disease virus springbok giraffe complete genome sequencing phylogenetics single nucleotide polymorphisms (SNPs) Microbiology Pravesh Kara verfasserin aut Robert D. Last verfasserin aut Marco Romito verfasserin aut David B. Wallace verfasserin aut In Viruses MDPI AG, 2009 16(2024), 2, p 172 (DE-627)609775871 (DE-600)2516098-9 19994915 nnns volume:16 year:2024 number:2, p 172 https://doi.org/10.3390/v16020172 kostenfrei https://doaj.org/article/e27b389b89904fdc9e174498c4f228f0 kostenfrei https://www.mdpi.com/1999-4915/16/2/172 kostenfrei https://doaj.org/toc/1999-4915 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 16 2024 2, p 172
allfieldsSound	10.3390/v16020172 doi (DE-627)DOAJ098435477 (DE-599)DOAJe27b389b89904fdc9e174498c4f228f0 DE-627 ger DE-627 rakwb eng QR1-502 Antoinette van Schalkwyk verfasserin aut Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa 2024 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Lumpy skin disease virus (LSDV) has recently undergone rapid spread, now being reported from more than 80 countries, affecting predominantly cattle and to a lesser extent, water buffalo. This poxvirus was previously considered to be highly host-range restricted. However, there is an increasing number of published reports on the detection of the virus from different game animal species. The virus has not only been shown to infect a wide range of game species under experimental conditions, but has also been naturally detected in oryx, giraffe, camels and gazelle. In addition, clinical lumpy skin disease has previously been described in springbok (<i<Antidorcas marsupialis</i<), an African antelope species, in South Africa. This report describes the characterization of lumpy skin disease virus belonging to cluster 1.2, from field samples from springbok, impala (<i<Aepyceros melampus</i<) and a giraffe (<i<Giraffa camelopardalis</i<) in South Africa using PCR, Sanger and whole genome sequencing. Most of these samples were submitted from wild animals in nature reserves or game parks, indicating that the disease is not restricted to captive-bred animals on game farms or zoological gardens. The potential role of wildlife species in the transmission and maintenance of LSDV is further discussed and requires continuing investigation, as the virus and disease may pose a serious threat to endangered species. lumpy skin disease virus springbok giraffe complete genome sequencing phylogenetics single nucleotide polymorphisms (SNPs) Microbiology Pravesh Kara verfasserin aut Robert D. Last verfasserin aut Marco Romito verfasserin aut David B. Wallace verfasserin aut In Viruses MDPI AG, 2009 16(2024), 2, p 172 (DE-627)609775871 (DE-600)2516098-9 19994915 nnns volume:16 year:2024 number:2, p 172 https://doi.org/10.3390/v16020172 kostenfrei https://doaj.org/article/e27b389b89904fdc9e174498c4f228f0 kostenfrei https://www.mdpi.com/1999-4915/16/2/172 kostenfrei https://doaj.org/toc/1999-4915 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 16 2024 2, p 172
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callnumber-first	Q - Science
author	Antoinette van Schalkwyk
spellingShingle	Antoinette van Schalkwyk misc QR1-502 misc lumpy skin disease virus misc springbok misc giraffe misc complete genome sequencing misc phylogenetics misc single nucleotide polymorphisms (SNPs) misc Microbiology Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa
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topic_title	QR1-502 Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa lumpy skin disease virus springbok giraffe complete genome sequencing phylogenetics single nucleotide polymorphisms (SNPs)
topic	misc QR1-502 misc lumpy skin disease virus misc springbok misc giraffe misc complete genome sequencing misc phylogenetics misc single nucleotide polymorphisms (SNPs) misc Microbiology
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title	Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa
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title_sort	detection and genome sequencing of lumpy skin disease viruses in wildlife game species in south africa
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title_auth	Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa
abstract	Lumpy skin disease virus (LSDV) has recently undergone rapid spread, now being reported from more than 80 countries, affecting predominantly cattle and to a lesser extent, water buffalo. This poxvirus was previously considered to be highly host-range restricted. However, there is an increasing number of published reports on the detection of the virus from different game animal species. The virus has not only been shown to infect a wide range of game species under experimental conditions, but has also been naturally detected in oryx, giraffe, camels and gazelle. In addition, clinical lumpy skin disease has previously been described in springbok (<i<Antidorcas marsupialis</i<), an African antelope species, in South Africa. This report describes the characterization of lumpy skin disease virus belonging to cluster 1.2, from field samples from springbok, impala (<i<Aepyceros melampus</i<) and a giraffe (<i<Giraffa camelopardalis</i<) in South Africa using PCR, Sanger and whole genome sequencing. Most of these samples were submitted from wild animals in nature reserves or game parks, indicating that the disease is not restricted to captive-bred animals on game farms or zoological gardens. The potential role of wildlife species in the transmission and maintenance of LSDV is further discussed and requires continuing investigation, as the virus and disease may pose a serious threat to endangered species.
abstractGer	Lumpy skin disease virus (LSDV) has recently undergone rapid spread, now being reported from more than 80 countries, affecting predominantly cattle and to a lesser extent, water buffalo. This poxvirus was previously considered to be highly host-range restricted. However, there is an increasing number of published reports on the detection of the virus from different game animal species. The virus has not only been shown to infect a wide range of game species under experimental conditions, but has also been naturally detected in oryx, giraffe, camels and gazelle. In addition, clinical lumpy skin disease has previously been described in springbok (<i<Antidorcas marsupialis</i<), an African antelope species, in South Africa. This report describes the characterization of lumpy skin disease virus belonging to cluster 1.2, from field samples from springbok, impala (<i<Aepyceros melampus</i<) and a giraffe (<i<Giraffa camelopardalis</i<) in South Africa using PCR, Sanger and whole genome sequencing. Most of these samples were submitted from wild animals in nature reserves or game parks, indicating that the disease is not restricted to captive-bred animals on game farms or zoological gardens. The potential role of wildlife species in the transmission and maintenance of LSDV is further discussed and requires continuing investigation, as the virus and disease may pose a serious threat to endangered species.
abstract_unstemmed	Lumpy skin disease virus (LSDV) has recently undergone rapid spread, now being reported from more than 80 countries, affecting predominantly cattle and to a lesser extent, water buffalo. This poxvirus was previously considered to be highly host-range restricted. However, there is an increasing number of published reports on the detection of the virus from different game animal species. The virus has not only been shown to infect a wide range of game species under experimental conditions, but has also been naturally detected in oryx, giraffe, camels and gazelle. In addition, clinical lumpy skin disease has previously been described in springbok (<i<Antidorcas marsupialis</i<), an African antelope species, in South Africa. This report describes the characterization of lumpy skin disease virus belonging to cluster 1.2, from field samples from springbok, impala (<i<Aepyceros melampus</i<) and a giraffe (<i<Giraffa camelopardalis</i<) in South Africa using PCR, Sanger and whole genome sequencing. Most of these samples were submitted from wild animals in nature reserves or game parks, indicating that the disease is not restricted to captive-bred animals on game farms or zoological gardens. The potential role of wildlife species in the transmission and maintenance of LSDV is further discussed and requires continuing investigation, as the virus and disease may pose a serious threat to endangered species.
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title_short	Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa
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Detection and Genome Sequencing of Lumpy Skin Disease Viruses in Wildlife Game Species in South Africa

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