Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations

Croatian pedunculate oak (<i<Quercus robur</i< L.) populations represent southern range peripheral populations, often viewed as sources of valuable diversity and drought-resistant ecotypes. At the same time, they endure stronger selection pressures as a result of climate change. The leav...
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Autor*in:	Maja Popović [verfasserIn] Ida Katičić Bogdan [verfasserIn] Filip Varga [verfasserIn] Zlatko Šatović [verfasserIn] Saša Bogdan [verfasserIn] Mladen Ivanković [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	peripheral populations nSSRs cpSSRs inbreeding differentiation diversity hotspot

Übergeordnetes Werk:	In: Forests - MDPI AG, 2010, 14(2023), 12, p 2290
Übergeordnetes Werk:	volume:14 ; year:2023 ; number:12, p 2290

Links:	Link aufrufen Link aufrufen Link aufrufen Journal toc

DOI / URN:	10.3390/f14122290

Katalog-ID:	DOAJ098870351

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allfields	10.3390/f14122290 doi (DE-627)DOAJ098870351 (DE-599)DOAJ4154b8072d944bdc8e1480afb6efcacf DE-627 ger DE-627 rakwb eng QK900-989 Maja Popović verfasserin aut Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Croatian pedunculate oak (<i<Quercus robur</i< L.) populations represent southern range peripheral populations, often viewed as sources of valuable diversity and drought-resistant ecotypes. At the same time, they endure stronger selection pressures as a result of climate change. The leaves of 20 individuals per population (17) were sampled in a field trial and analyzed using 10 nuclear and 9 chloroplast SSRs to determine the level of intrapopulation genetic variability and genetic differentiation. Analysis with nSSRs revealed deviation from HWE in seven populations. AMOVA showed a high intra-population diversity (98.53%) and a small but statistically significant inter-population differentiation. Isolation by distance explained 19.6% of differentiation. Average <i<F<sub<ST</sub<</i< between populations was low (0.013) compared with usual values for peripheral populations. Populations were rich in cpSSR haplotypes, confirming the hotspot of diversity caused by the encounter of recolonization routes. Unbiased haplotype diversity (<i<H<sub<E</sub<</i<) from 9 chloroplast SSRs and 325 individuals was (<i<H<sub<E</sub<</i< = 0.440). Sixty-six different haplotypes were grouped in three maternal lineages by both a median-joining network and a neighbor-joining algorithm. AMOVA for cpSSRs showed statistically significant diversity among populations (70.23%), suggesting genetic differentiation, but also a probable anthropogenic effect. AMOVA of nSSRs within and between lineages showed that original recolonization patterns of nuclear diversity were subsequently erased by gene flow. peripheral populations nSSRs cpSSRs inbreeding differentiation diversity hotspot Plant ecology Ida Katičić Bogdan verfasserin aut Filip Varga verfasserin aut Zlatko Šatović verfasserin aut Saša Bogdan verfasserin aut Mladen Ivanković verfasserin aut In Forests MDPI AG, 2010 14(2023), 12, p 2290 (DE-627)614095689 (DE-600)2527081-3 19994907 nnns volume:14 year:2023 number:12, p 2290 https://doi.org/10.3390/f14122290 kostenfrei https://doaj.org/article/4154b8072d944bdc8e1480afb6efcacf kostenfrei https://www.mdpi.com/1999-4907/14/12/2290 kostenfrei https://doaj.org/toc/1999-4907 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 12, p 2290
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allfieldsSound	10.3390/f14122290 doi (DE-627)DOAJ098870351 (DE-599)DOAJ4154b8072d944bdc8e1480afb6efcacf DE-627 ger DE-627 rakwb eng QK900-989 Maja Popović verfasserin aut Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Croatian pedunculate oak (<i<Quercus robur</i< L.) populations represent southern range peripheral populations, often viewed as sources of valuable diversity and drought-resistant ecotypes. At the same time, they endure stronger selection pressures as a result of climate change. The leaves of 20 individuals per population (17) were sampled in a field trial and analyzed using 10 nuclear and 9 chloroplast SSRs to determine the level of intrapopulation genetic variability and genetic differentiation. Analysis with nSSRs revealed deviation from HWE in seven populations. AMOVA showed a high intra-population diversity (98.53%) and a small but statistically significant inter-population differentiation. Isolation by distance explained 19.6% of differentiation. Average <i<F<sub<ST</sub<</i< between populations was low (0.013) compared with usual values for peripheral populations. Populations were rich in cpSSR haplotypes, confirming the hotspot of diversity caused by the encounter of recolonization routes. Unbiased haplotype diversity (<i<H<sub<E</sub<</i<) from 9 chloroplast SSRs and 325 individuals was (<i<H<sub<E</sub<</i< = 0.440). Sixty-six different haplotypes were grouped in three maternal lineages by both a median-joining network and a neighbor-joining algorithm. AMOVA for cpSSRs showed statistically significant diversity among populations (70.23%), suggesting genetic differentiation, but also a probable anthropogenic effect. AMOVA of nSSRs within and between lineages showed that original recolonization patterns of nuclear diversity were subsequently erased by gene flow. peripheral populations nSSRs cpSSRs inbreeding differentiation diversity hotspot Plant ecology Ida Katičić Bogdan verfasserin aut Filip Varga verfasserin aut Zlatko Šatović verfasserin aut Saša Bogdan verfasserin aut Mladen Ivanković verfasserin aut In Forests MDPI AG, 2010 14(2023), 12, p 2290 (DE-627)614095689 (DE-600)2527081-3 19994907 nnns volume:14 year:2023 number:12, p 2290 https://doi.org/10.3390/f14122290 kostenfrei https://doaj.org/article/4154b8072d944bdc8e1480afb6efcacf kostenfrei https://www.mdpi.com/1999-4907/14/12/2290 kostenfrei https://doaj.org/toc/1999-4907 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 12, p 2290
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callnumber-first	Q - Science
author	Maja Popović
spellingShingle	Maja Popović misc QK900-989 misc peripheral populations misc nSSRs misc cpSSRs misc inbreeding misc differentiation misc diversity hotspot misc Plant ecology Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations
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topic_title	QK900-989 Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations peripheral populations nSSRs cpSSRs inbreeding differentiation diversity hotspot
topic	misc QK900-989 misc peripheral populations misc nSSRs misc cpSSRs misc inbreeding misc differentiation misc diversity hotspot misc Plant ecology
topic_unstemmed	misc QK900-989 misc peripheral populations misc nSSRs misc cpSSRs misc inbreeding misc differentiation misc diversity hotspot misc Plant ecology
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title	Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations
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title_full	Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations
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title_sort	genetic diversity in peripheral pedunculate oak (<i<quercus robur</i< l.) provenances—potential climate change mitigators in the center of distribution despite challenges in natural populations
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title_auth	Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations
abstract	Croatian pedunculate oak (<i<Quercus robur</i< L.) populations represent southern range peripheral populations, often viewed as sources of valuable diversity and drought-resistant ecotypes. At the same time, they endure stronger selection pressures as a result of climate change. The leaves of 20 individuals per population (17) were sampled in a field trial and analyzed using 10 nuclear and 9 chloroplast SSRs to determine the level of intrapopulation genetic variability and genetic differentiation. Analysis with nSSRs revealed deviation from HWE in seven populations. AMOVA showed a high intra-population diversity (98.53%) and a small but statistically significant inter-population differentiation. Isolation by distance explained 19.6% of differentiation. Average <i<F<sub<ST</sub<</i< between populations was low (0.013) compared with usual values for peripheral populations. Populations were rich in cpSSR haplotypes, confirming the hotspot of diversity caused by the encounter of recolonization routes. Unbiased haplotype diversity (<i<H<sub<E</sub<</i<) from 9 chloroplast SSRs and 325 individuals was (<i<H<sub<E</sub<</i< = 0.440). Sixty-six different haplotypes were grouped in three maternal lineages by both a median-joining network and a neighbor-joining algorithm. AMOVA for cpSSRs showed statistically significant diversity among populations (70.23%), suggesting genetic differentiation, but also a probable anthropogenic effect. AMOVA of nSSRs within and between lineages showed that original recolonization patterns of nuclear diversity were subsequently erased by gene flow.
abstractGer	Croatian pedunculate oak (<i<Quercus robur</i< L.) populations represent southern range peripheral populations, often viewed as sources of valuable diversity and drought-resistant ecotypes. At the same time, they endure stronger selection pressures as a result of climate change. The leaves of 20 individuals per population (17) were sampled in a field trial and analyzed using 10 nuclear and 9 chloroplast SSRs to determine the level of intrapopulation genetic variability and genetic differentiation. Analysis with nSSRs revealed deviation from HWE in seven populations. AMOVA showed a high intra-population diversity (98.53%) and a small but statistically significant inter-population differentiation. Isolation by distance explained 19.6% of differentiation. Average <i<F<sub<ST</sub<</i< between populations was low (0.013) compared with usual values for peripheral populations. Populations were rich in cpSSR haplotypes, confirming the hotspot of diversity caused by the encounter of recolonization routes. Unbiased haplotype diversity (<i<H<sub<E</sub<</i<) from 9 chloroplast SSRs and 325 individuals was (<i<H<sub<E</sub<</i< = 0.440). Sixty-six different haplotypes were grouped in three maternal lineages by both a median-joining network and a neighbor-joining algorithm. AMOVA for cpSSRs showed statistically significant diversity among populations (70.23%), suggesting genetic differentiation, but also a probable anthropogenic effect. AMOVA of nSSRs within and between lineages showed that original recolonization patterns of nuclear diversity were subsequently erased by gene flow.
abstract_unstemmed	Croatian pedunculate oak (<i<Quercus robur</i< L.) populations represent southern range peripheral populations, often viewed as sources of valuable diversity and drought-resistant ecotypes. At the same time, they endure stronger selection pressures as a result of climate change. The leaves of 20 individuals per population (17) were sampled in a field trial and analyzed using 10 nuclear and 9 chloroplast SSRs to determine the level of intrapopulation genetic variability and genetic differentiation. Analysis with nSSRs revealed deviation from HWE in seven populations. AMOVA showed a high intra-population diversity (98.53%) and a small but statistically significant inter-population differentiation. Isolation by distance explained 19.6% of differentiation. Average <i<F<sub<ST</sub<</i< between populations was low (0.013) compared with usual values for peripheral populations. Populations were rich in cpSSR haplotypes, confirming the hotspot of diversity caused by the encounter of recolonization routes. Unbiased haplotype diversity (<i<H<sub<E</sub<</i<) from 9 chloroplast SSRs and 325 individuals was (<i<H<sub<E</sub<</i< = 0.440). Sixty-six different haplotypes were grouped in three maternal lineages by both a median-joining network and a neighbor-joining algorithm. AMOVA for cpSSRs showed statistically significant diversity among populations (70.23%), suggesting genetic differentiation, but also a probable anthropogenic effect. AMOVA of nSSRs within and between lineages showed that original recolonization patterns of nuclear diversity were subsequently erased by gene flow.
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title_short	Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations
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Genetic Diversity in Peripheral Pedunculate Oak (<i<Quercus robur</i< L.) Provenances—Potential Climate Change Mitigators in the Center of Distribution despite Challenges in Natural Populations

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