Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates
Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Wenqian Kong [verfasserIn] Min Liu [verfasserIn] Peter Felker [verfasserIn] Mauricio Ewens [verfasserIn] Cecilia Bessega [verfasserIn] Carolina Pometti [verfasserIn] Jinpeng Wang [verfasserIn] Peng Xu [verfasserIn] Jia Teng [verfasserIn] Jinyu Wang [verfasserIn] Xiyin Wang [verfasserIn] Yuannian Jiao [verfasserIn] Magdy S. Alabady [verfasserIn] Françoise Thibaud‐Nissen [verfasserIn] Patrick Masterson [verfasserIn] Xin Qiao [verfasserIn] Andrew H. Paterson [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2023 |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
In: Plants, People, Planet - Wiley, 2019, 5(2023), 6, Seite 933-947 |
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| Übergeordnetes Werk: |
volume:5 ; year:2023 ; number:6 ; pages:933-947 |
| Links: |
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| DOI / URN: |
10.1002/ppp3.10404 |
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| Katalog-ID: |
DOAJ100291961 |
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| 245 | 1 | 0 | |a Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates |
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| 520 | |a Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well‐suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt‐tolerant nitrogen‐fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume‐common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi‐copy orthologous groups with features associated with pathogen resistance and single‐copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay‐green habit. Coupling genomics‐based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles. | ||
| 650 | 4 | |a colinearity | |
| 650 | 4 | |a nitrogen fixation | |
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| 700 | 0 | |a Min Liu |e verfasserin |4 aut | |
| 700 | 0 | |a Peter Felker |e verfasserin |4 aut | |
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| 700 | 0 | |a Cecilia Bessega |e verfasserin |4 aut | |
| 700 | 0 | |a Carolina Pometti |e verfasserin |4 aut | |
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| 700 | 0 | |a Jinyu Wang |e verfasserin |4 aut | |
| 700 | 0 | |a Xiyin Wang |e verfasserin |4 aut | |
| 700 | 0 | |a Yuannian Jiao |e verfasserin |4 aut | |
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| 700 | 0 | |a Françoise Thibaud‐Nissen |e verfasserin |4 aut | |
| 700 | 0 | |a Patrick Masterson |e verfasserin |4 aut | |
| 700 | 0 | |a Xin Qiao |e verfasserin |4 aut | |
| 700 | 0 | |a Andrew H. Paterson |e verfasserin |4 aut | |
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10.1002/ppp3.10404 doi (DE-627)DOAJ100291961 (DE-599)DOAJf226d77d2cea4446b2512b2d808b10c9 DE-627 ger DE-627 rakwb eng GE1-350 QK1-989 Wenqian Kong verfasserin aut Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well‐suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt‐tolerant nitrogen‐fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume‐common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi‐copy orthologous groups with features associated with pathogen resistance and single‐copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay‐green habit. Coupling genomics‐based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles. colinearity nitrogen fixation pathways photosynthesis stress Environmental sciences Botany Min Liu verfasserin aut Peter Felker verfasserin aut Mauricio Ewens verfasserin aut Cecilia Bessega verfasserin aut Carolina Pometti verfasserin aut Jinpeng Wang verfasserin aut Peng Xu verfasserin aut Jia Teng verfasserin aut Jinyu Wang verfasserin aut Xiyin Wang verfasserin aut Yuannian Jiao verfasserin aut Magdy S. Alabady verfasserin aut Françoise Thibaud‐Nissen verfasserin aut Patrick Masterson verfasserin aut Xin Qiao verfasserin aut Andrew H. Paterson verfasserin aut In Plants, People, Planet Wiley, 2019 5(2023), 6, Seite 933-947 (DE-627)1025401395 (DE-600)2934377-X 25722611 nnns volume:5 year:2023 number:6 pages:933-947 https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/article/f226d77d2cea4446b2512b2d808b10c9 kostenfrei https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/toc/2572-2611 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 5 2023 6 933-947 |
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10.1002/ppp3.10404 doi (DE-627)DOAJ100291961 (DE-599)DOAJf226d77d2cea4446b2512b2d808b10c9 DE-627 ger DE-627 rakwb eng GE1-350 QK1-989 Wenqian Kong verfasserin aut Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well‐suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt‐tolerant nitrogen‐fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume‐common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi‐copy orthologous groups with features associated with pathogen resistance and single‐copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay‐green habit. Coupling genomics‐based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles. colinearity nitrogen fixation pathways photosynthesis stress Environmental sciences Botany Min Liu verfasserin aut Peter Felker verfasserin aut Mauricio Ewens verfasserin aut Cecilia Bessega verfasserin aut Carolina Pometti verfasserin aut Jinpeng Wang verfasserin aut Peng Xu verfasserin aut Jia Teng verfasserin aut Jinyu Wang verfasserin aut Xiyin Wang verfasserin aut Yuannian Jiao verfasserin aut Magdy S. Alabady verfasserin aut Françoise Thibaud‐Nissen verfasserin aut Patrick Masterson verfasserin aut Xin Qiao verfasserin aut Andrew H. Paterson verfasserin aut In Plants, People, Planet Wiley, 2019 5(2023), 6, Seite 933-947 (DE-627)1025401395 (DE-600)2934377-X 25722611 nnns volume:5 year:2023 number:6 pages:933-947 https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/article/f226d77d2cea4446b2512b2d808b10c9 kostenfrei https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/toc/2572-2611 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 5 2023 6 933-947 |
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10.1002/ppp3.10404 doi (DE-627)DOAJ100291961 (DE-599)DOAJf226d77d2cea4446b2512b2d808b10c9 DE-627 ger DE-627 rakwb eng GE1-350 QK1-989 Wenqian Kong verfasserin aut Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well‐suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt‐tolerant nitrogen‐fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume‐common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi‐copy orthologous groups with features associated with pathogen resistance and single‐copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay‐green habit. Coupling genomics‐based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles. colinearity nitrogen fixation pathways photosynthesis stress Environmental sciences Botany Min Liu verfasserin aut Peter Felker verfasserin aut Mauricio Ewens verfasserin aut Cecilia Bessega verfasserin aut Carolina Pometti verfasserin aut Jinpeng Wang verfasserin aut Peng Xu verfasserin aut Jia Teng verfasserin aut Jinyu Wang verfasserin aut Xiyin Wang verfasserin aut Yuannian Jiao verfasserin aut Magdy S. Alabady verfasserin aut Françoise Thibaud‐Nissen verfasserin aut Patrick Masterson verfasserin aut Xin Qiao verfasserin aut Andrew H. Paterson verfasserin aut In Plants, People, Planet Wiley, 2019 5(2023), 6, Seite 933-947 (DE-627)1025401395 (DE-600)2934377-X 25722611 nnns volume:5 year:2023 number:6 pages:933-947 https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/article/f226d77d2cea4446b2512b2d808b10c9 kostenfrei https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/toc/2572-2611 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 5 2023 6 933-947 |
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10.1002/ppp3.10404 doi (DE-627)DOAJ100291961 (DE-599)DOAJf226d77d2cea4446b2512b2d808b10c9 DE-627 ger DE-627 rakwb eng GE1-350 QK1-989 Wenqian Kong verfasserin aut Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well‐suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt‐tolerant nitrogen‐fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume‐common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi‐copy orthologous groups with features associated with pathogen resistance and single‐copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay‐green habit. Coupling genomics‐based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles. colinearity nitrogen fixation pathways photosynthesis stress Environmental sciences Botany Min Liu verfasserin aut Peter Felker verfasserin aut Mauricio Ewens verfasserin aut Cecilia Bessega verfasserin aut Carolina Pometti verfasserin aut Jinpeng Wang verfasserin aut Peng Xu verfasserin aut Jia Teng verfasserin aut Jinyu Wang verfasserin aut Xiyin Wang verfasserin aut Yuannian Jiao verfasserin aut Magdy S. Alabady verfasserin aut Françoise Thibaud‐Nissen verfasserin aut Patrick Masterson verfasserin aut Xin Qiao verfasserin aut Andrew H. Paterson verfasserin aut In Plants, People, Planet Wiley, 2019 5(2023), 6, Seite 933-947 (DE-627)1025401395 (DE-600)2934377-X 25722611 nnns volume:5 year:2023 number:6 pages:933-947 https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/article/f226d77d2cea4446b2512b2d808b10c9 kostenfrei https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/toc/2572-2611 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 5 2023 6 933-947 |
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10.1002/ppp3.10404 doi (DE-627)DOAJ100291961 (DE-599)DOAJf226d77d2cea4446b2512b2d808b10c9 DE-627 ger DE-627 rakwb eng GE1-350 QK1-989 Wenqian Kong verfasserin aut Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well‐suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt‐tolerant nitrogen‐fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume‐common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi‐copy orthologous groups with features associated with pathogen resistance and single‐copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay‐green habit. Coupling genomics‐based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles. colinearity nitrogen fixation pathways photosynthesis stress Environmental sciences Botany Min Liu verfasserin aut Peter Felker verfasserin aut Mauricio Ewens verfasserin aut Cecilia Bessega verfasserin aut Carolina Pometti verfasserin aut Jinpeng Wang verfasserin aut Peng Xu verfasserin aut Jia Teng verfasserin aut Jinyu Wang verfasserin aut Xiyin Wang verfasserin aut Yuannian Jiao verfasserin aut Magdy S. Alabady verfasserin aut Françoise Thibaud‐Nissen verfasserin aut Patrick Masterson verfasserin aut Xin Qiao verfasserin aut Andrew H. Paterson verfasserin aut In Plants, People, Planet Wiley, 2019 5(2023), 6, Seite 933-947 (DE-627)1025401395 (DE-600)2934377-X 25722611 nnns volume:5 year:2023 number:6 pages:933-947 https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/article/f226d77d2cea4446b2512b2d808b10c9 kostenfrei https://doi.org/10.1002/ppp3.10404 kostenfrei https://doaj.org/toc/2572-2611 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 5 2023 6 933-947 |
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In Plants, People, Planet 5(2023), 6, Seite 933-947 volume:5 year:2023 number:6 pages:933-947 |
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Wenqian Kong @@aut@@ Min Liu @@aut@@ Peter Felker @@aut@@ Mauricio Ewens @@aut@@ Cecilia Bessega @@aut@@ Carolina Pometti @@aut@@ Jinpeng Wang @@aut@@ Peng Xu @@aut@@ Jia Teng @@aut@@ Jinyu Wang @@aut@@ Xiyin Wang @@aut@@ Yuannian Jiao @@aut@@ Magdy S. Alabady @@aut@@ Françoise Thibaud‐Nissen @@aut@@ Patrick Masterson @@aut@@ Xin Qiao @@aut@@ Andrew H. Paterson @@aut@@ |
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Wenqian Kong |
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Wenqian Kong misc GE1-350 misc QK1-989 misc colinearity misc nitrogen fixation misc pathways misc photosynthesis misc stress misc Environmental sciences misc Botany Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates |
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GE1-350 QK1-989 Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates colinearity nitrogen fixation pathways photosynthesis stress |
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Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates |
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Wenqian Kong Min Liu Peter Felker Mauricio Ewens Cecilia Bessega Carolina Pometti Jinpeng Wang Peng Xu Jia Teng Jinyu Wang Xiyin Wang Yuannian Jiao Magdy S. Alabady Françoise Thibaud‐Nissen Patrick Masterson Xin Qiao Andrew H. Paterson |
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genome and evolution of prosopis alba griseb., a drought and salinity tolerant tree legume crop for arid climates |
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Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates |
| abstract |
Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well‐suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt‐tolerant nitrogen‐fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume‐common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi‐copy orthologous groups with features associated with pathogen resistance and single‐copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay‐green habit. Coupling genomics‐based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles. |
| abstractGer |
Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well‐suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt‐tolerant nitrogen‐fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume‐common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi‐copy orthologous groups with features associated with pathogen resistance and single‐copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay‐green habit. Coupling genomics‐based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles. |
| abstract_unstemmed |
Societal Impact Statement Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi‐arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well‐suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt‐tolerant nitrogen‐fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume‐common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi‐copy orthologous groups with features associated with pathogen resistance and single‐copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay‐green habit. Coupling genomics‐based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles. |
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| title_short |
Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates |
| url |
https://doi.org/10.1002/ppp3.10404 https://doaj.org/article/f226d77d2cea4446b2512b2d808b10c9 https://doaj.org/toc/2572-2611 |
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Min Liu Peter Felker Mauricio Ewens Cecilia Bessega Carolina Pometti Jinpeng Wang Peng Xu Jia Teng Jinyu Wang Xiyin Wang Yuannian Jiao Magdy S. Alabady Françoise Thibaud‐Nissen Patrick Masterson Xin Qiao Andrew H. Paterson |
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Min Liu Peter Felker Mauricio Ewens Cecilia Bessega Carolina Pometti Jinpeng Wang Peng Xu Jia Teng Jinyu Wang Xiyin Wang Yuannian Jiao Magdy S. Alabady Françoise Thibaud‐Nissen Patrick Masterson Xin Qiao Andrew H. Paterson |
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10.1002/ppp3.10404 |
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| up_date |
2024-07-03T13:52:00.358Z |
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| score |
7.400714 |