Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress
Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Yang, Yingying [verfasserIn] Gao, Shiwu [verfasserIn] Su, Yachun [verfasserIn] Lin, Zhaoli [verfasserIn] Guo, Jinlong [verfasserIn] Li, Mingjie [verfasserIn] Wang, Zhoutao [verfasserIn] Que, Youxiong [verfasserIn] Xu, Liping [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2019 |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
Enthalten in: Environmental and experimental botany - Amsterdam [u.a.] : Elsevier Science, 1976, 163, Seite 97-111 |
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| Übergeordnetes Werk: |
volume:163 ; pages:97-111 |
| DOI / URN: |
10.1016/j.envexpbot.2019.04.010 |
|---|
| Katalog-ID: |
ELV002190540 |
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| 245 | 1 | 0 | |a Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress |
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| 520 | |a Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes (NSIs) of plant fresh weight and plant N accumulation in ROC22 was respectively 38.18% and 17.44% lower than that of Badila. Based on the morphological and physiological measurements and the expression of eight key genes in N metabolism, the leaves (6 h) and roots (3 h) of ROC22 and Badila under low N condition (0.6 mM N) were selected for RNA-Seq analysis. In the leaves and roots, the total and up-regulated numbers of differentially expressed genes (DEGs) in ROC22 was significantly higher than that of Badila. The specific DEGs in the ROC22 leaves mainly enriched in photosynthesis and N metabolism, whereas those in the ROC22 roots mainly enriched in N metabolism and the hormone signal transduction pathway. MYB was the largest differentially expressed transcription factor (TF) gene family in both varieties, followed by AP2-EREBP. In the leaves and roots of ROC22, several genes related to IAA and ABA hormone pathways, N assimilation process, and PSI and PSII of the photosynthesis pathways modulated the physiological characteristics under low N stress, correspondingly, IAA concentration increased by 11.47% (leaves) and 9.24% (roots), and glutamine synthetase (GS) enzyme activities increased by 28.13% (leaves) and 36.97% (roots), which may explain the observed differences in low N tolerance between ROC22 and Badila. This study has provided a basis for improvement of sugarcane in adapting to low N conditions. | ||
| 650 | 4 | |a Sugarcane | |
| 650 | 4 | |a Low nitrogen | |
| 650 | 4 | |a Transcriptome | |
| 650 | 4 | |a Physiological | |
| 650 | 4 | |a Hormone | |
| 650 | 4 | |a Nitrogen metabolism | |
| 700 | 1 | |a Gao, Shiwu |e verfasserin |4 aut | |
| 700 | 1 | |a Su, Yachun |e verfasserin |4 aut | |
| 700 | 1 | |a Lin, Zhaoli |e verfasserin |4 aut | |
| 700 | 1 | |a Guo, Jinlong |e verfasserin |4 aut | |
| 700 | 1 | |a Li, Mingjie |e verfasserin |4 aut | |
| 700 | 1 | |a Wang, Zhoutao |e verfasserin |4 aut | |
| 700 | 1 | |a Que, Youxiong |e verfasserin |4 aut | |
| 700 | 1 | |a Xu, Liping |e verfasserin |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Environmental and experimental botany |d Amsterdam [u.a.] : Elsevier Science, 1976 |g 163, Seite 97-111 |h Online-Ressource |w (DE-627)306580748 |w (DE-600)1497561-0 |w (DE-576)090954467 |x 0098-8472 |7 nnns |
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10.1016/j.envexpbot.2019.04.010 doi (DE-627)ELV002190540 (ELSEVIER)S0098-8472(19)30064-4 DE-627 ger DE-627 rda eng 580 DE-600 BIODIV DE-30 fid 42.00 bkl Yang, Yingying verfasserin aut Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress 2019 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes (NSIs) of plant fresh weight and plant N accumulation in ROC22 was respectively 38.18% and 17.44% lower than that of Badila. Based on the morphological and physiological measurements and the expression of eight key genes in N metabolism, the leaves (6 h) and roots (3 h) of ROC22 and Badila under low N condition (0.6 mM N) were selected for RNA-Seq analysis. In the leaves and roots, the total and up-regulated numbers of differentially expressed genes (DEGs) in ROC22 was significantly higher than that of Badila. The specific DEGs in the ROC22 leaves mainly enriched in photosynthesis and N metabolism, whereas those in the ROC22 roots mainly enriched in N metabolism and the hormone signal transduction pathway. MYB was the largest differentially expressed transcription factor (TF) gene family in both varieties, followed by AP2-EREBP. In the leaves and roots of ROC22, several genes related to IAA and ABA hormone pathways, N assimilation process, and PSI and PSII of the photosynthesis pathways modulated the physiological characteristics under low N stress, correspondingly, IAA concentration increased by 11.47% (leaves) and 9.24% (roots), and glutamine synthetase (GS) enzyme activities increased by 28.13% (leaves) and 36.97% (roots), which may explain the observed differences in low N tolerance between ROC22 and Badila. This study has provided a basis for improvement of sugarcane in adapting to low N conditions. Sugarcane Low nitrogen Transcriptome Physiological Hormone Nitrogen metabolism Gao, Shiwu verfasserin aut Su, Yachun verfasserin aut Lin, Zhaoli verfasserin aut Guo, Jinlong verfasserin aut Li, Mingjie verfasserin aut Wang, Zhoutao verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Environmental and experimental botany Amsterdam [u.a.] : Elsevier Science, 1976 163, Seite 97-111 Online-Ressource (DE-627)306580748 (DE-600)1497561-0 (DE-576)090954467 0098-8472 nnns volume:163 pages:97-111 GBV_USEFLAG_U SYSFLAG_U GBV_ELV FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 42.00 Biologie: Allgemeines AR 163 97-111 |
| spelling |
10.1016/j.envexpbot.2019.04.010 doi (DE-627)ELV002190540 (ELSEVIER)S0098-8472(19)30064-4 DE-627 ger DE-627 rda eng 580 DE-600 BIODIV DE-30 fid 42.00 bkl Yang, Yingying verfasserin aut Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress 2019 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes (NSIs) of plant fresh weight and plant N accumulation in ROC22 was respectively 38.18% and 17.44% lower than that of Badila. Based on the morphological and physiological measurements and the expression of eight key genes in N metabolism, the leaves (6 h) and roots (3 h) of ROC22 and Badila under low N condition (0.6 mM N) were selected for RNA-Seq analysis. In the leaves and roots, the total and up-regulated numbers of differentially expressed genes (DEGs) in ROC22 was significantly higher than that of Badila. The specific DEGs in the ROC22 leaves mainly enriched in photosynthesis and N metabolism, whereas those in the ROC22 roots mainly enriched in N metabolism and the hormone signal transduction pathway. MYB was the largest differentially expressed transcription factor (TF) gene family in both varieties, followed by AP2-EREBP. In the leaves and roots of ROC22, several genes related to IAA and ABA hormone pathways, N assimilation process, and PSI and PSII of the photosynthesis pathways modulated the physiological characteristics under low N stress, correspondingly, IAA concentration increased by 11.47% (leaves) and 9.24% (roots), and glutamine synthetase (GS) enzyme activities increased by 28.13% (leaves) and 36.97% (roots), which may explain the observed differences in low N tolerance between ROC22 and Badila. This study has provided a basis for improvement of sugarcane in adapting to low N conditions. Sugarcane Low nitrogen Transcriptome Physiological Hormone Nitrogen metabolism Gao, Shiwu verfasserin aut Su, Yachun verfasserin aut Lin, Zhaoli verfasserin aut Guo, Jinlong verfasserin aut Li, Mingjie verfasserin aut Wang, Zhoutao verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Environmental and experimental botany Amsterdam [u.a.] : Elsevier Science, 1976 163, Seite 97-111 Online-Ressource (DE-627)306580748 (DE-600)1497561-0 (DE-576)090954467 0098-8472 nnns volume:163 pages:97-111 GBV_USEFLAG_U SYSFLAG_U GBV_ELV FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 42.00 Biologie: Allgemeines AR 163 97-111 |
| allfields_unstemmed |
10.1016/j.envexpbot.2019.04.010 doi (DE-627)ELV002190540 (ELSEVIER)S0098-8472(19)30064-4 DE-627 ger DE-627 rda eng 580 DE-600 BIODIV DE-30 fid 42.00 bkl Yang, Yingying verfasserin aut Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress 2019 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes (NSIs) of plant fresh weight and plant N accumulation in ROC22 was respectively 38.18% and 17.44% lower than that of Badila. Based on the morphological and physiological measurements and the expression of eight key genes in N metabolism, the leaves (6 h) and roots (3 h) of ROC22 and Badila under low N condition (0.6 mM N) were selected for RNA-Seq analysis. In the leaves and roots, the total and up-regulated numbers of differentially expressed genes (DEGs) in ROC22 was significantly higher than that of Badila. The specific DEGs in the ROC22 leaves mainly enriched in photosynthesis and N metabolism, whereas those in the ROC22 roots mainly enriched in N metabolism and the hormone signal transduction pathway. MYB was the largest differentially expressed transcription factor (TF) gene family in both varieties, followed by AP2-EREBP. In the leaves and roots of ROC22, several genes related to IAA and ABA hormone pathways, N assimilation process, and PSI and PSII of the photosynthesis pathways modulated the physiological characteristics under low N stress, correspondingly, IAA concentration increased by 11.47% (leaves) and 9.24% (roots), and glutamine synthetase (GS) enzyme activities increased by 28.13% (leaves) and 36.97% (roots), which may explain the observed differences in low N tolerance between ROC22 and Badila. This study has provided a basis for improvement of sugarcane in adapting to low N conditions. Sugarcane Low nitrogen Transcriptome Physiological Hormone Nitrogen metabolism Gao, Shiwu verfasserin aut Su, Yachun verfasserin aut Lin, Zhaoli verfasserin aut Guo, Jinlong verfasserin aut Li, Mingjie verfasserin aut Wang, Zhoutao verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Environmental and experimental botany Amsterdam [u.a.] : Elsevier Science, 1976 163, Seite 97-111 Online-Ressource (DE-627)306580748 (DE-600)1497561-0 (DE-576)090954467 0098-8472 nnns volume:163 pages:97-111 GBV_USEFLAG_U SYSFLAG_U GBV_ELV FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 42.00 Biologie: Allgemeines AR 163 97-111 |
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10.1016/j.envexpbot.2019.04.010 doi (DE-627)ELV002190540 (ELSEVIER)S0098-8472(19)30064-4 DE-627 ger DE-627 rda eng 580 DE-600 BIODIV DE-30 fid 42.00 bkl Yang, Yingying verfasserin aut Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress 2019 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes (NSIs) of plant fresh weight and plant N accumulation in ROC22 was respectively 38.18% and 17.44% lower than that of Badila. Based on the morphological and physiological measurements and the expression of eight key genes in N metabolism, the leaves (6 h) and roots (3 h) of ROC22 and Badila under low N condition (0.6 mM N) were selected for RNA-Seq analysis. In the leaves and roots, the total and up-regulated numbers of differentially expressed genes (DEGs) in ROC22 was significantly higher than that of Badila. The specific DEGs in the ROC22 leaves mainly enriched in photosynthesis and N metabolism, whereas those in the ROC22 roots mainly enriched in N metabolism and the hormone signal transduction pathway. MYB was the largest differentially expressed transcription factor (TF) gene family in both varieties, followed by AP2-EREBP. In the leaves and roots of ROC22, several genes related to IAA and ABA hormone pathways, N assimilation process, and PSI and PSII of the photosynthesis pathways modulated the physiological characteristics under low N stress, correspondingly, IAA concentration increased by 11.47% (leaves) and 9.24% (roots), and glutamine synthetase (GS) enzyme activities increased by 28.13% (leaves) and 36.97% (roots), which may explain the observed differences in low N tolerance between ROC22 and Badila. This study has provided a basis for improvement of sugarcane in adapting to low N conditions. Sugarcane Low nitrogen Transcriptome Physiological Hormone Nitrogen metabolism Gao, Shiwu verfasserin aut Su, Yachun verfasserin aut Lin, Zhaoli verfasserin aut Guo, Jinlong verfasserin aut Li, Mingjie verfasserin aut Wang, Zhoutao verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Environmental and experimental botany Amsterdam [u.a.] : Elsevier Science, 1976 163, Seite 97-111 Online-Ressource (DE-627)306580748 (DE-600)1497561-0 (DE-576)090954467 0098-8472 nnns volume:163 pages:97-111 GBV_USEFLAG_U SYSFLAG_U GBV_ELV FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 42.00 Biologie: Allgemeines AR 163 97-111 |
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10.1016/j.envexpbot.2019.04.010 doi (DE-627)ELV002190540 (ELSEVIER)S0098-8472(19)30064-4 DE-627 ger DE-627 rda eng 580 DE-600 BIODIV DE-30 fid 42.00 bkl Yang, Yingying verfasserin aut Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress 2019 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes (NSIs) of plant fresh weight and plant N accumulation in ROC22 was respectively 38.18% and 17.44% lower than that of Badila. Based on the morphological and physiological measurements and the expression of eight key genes in N metabolism, the leaves (6 h) and roots (3 h) of ROC22 and Badila under low N condition (0.6 mM N) were selected for RNA-Seq analysis. In the leaves and roots, the total and up-regulated numbers of differentially expressed genes (DEGs) in ROC22 was significantly higher than that of Badila. The specific DEGs in the ROC22 leaves mainly enriched in photosynthesis and N metabolism, whereas those in the ROC22 roots mainly enriched in N metabolism and the hormone signal transduction pathway. MYB was the largest differentially expressed transcription factor (TF) gene family in both varieties, followed by AP2-EREBP. In the leaves and roots of ROC22, several genes related to IAA and ABA hormone pathways, N assimilation process, and PSI and PSII of the photosynthesis pathways modulated the physiological characteristics under low N stress, correspondingly, IAA concentration increased by 11.47% (leaves) and 9.24% (roots), and glutamine synthetase (GS) enzyme activities increased by 28.13% (leaves) and 36.97% (roots), which may explain the observed differences in low N tolerance between ROC22 and Badila. This study has provided a basis for improvement of sugarcane in adapting to low N conditions. Sugarcane Low nitrogen Transcriptome Physiological Hormone Nitrogen metabolism Gao, Shiwu verfasserin aut Su, Yachun verfasserin aut Lin, Zhaoli verfasserin aut Guo, Jinlong verfasserin aut Li, Mingjie verfasserin aut Wang, Zhoutao verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Environmental and experimental botany Amsterdam [u.a.] : Elsevier Science, 1976 163, Seite 97-111 Online-Ressource (DE-627)306580748 (DE-600)1497561-0 (DE-576)090954467 0098-8472 nnns volume:163 pages:97-111 GBV_USEFLAG_U SYSFLAG_U GBV_ELV FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 42.00 Biologie: Allgemeines AR 163 97-111 |
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Yang, Yingying @@aut@@ Gao, Shiwu @@aut@@ Su, Yachun @@aut@@ Lin, Zhaoli @@aut@@ Guo, Jinlong @@aut@@ Li, Mingjie @@aut@@ Wang, Zhoutao @@aut@@ Que, Youxiong @@aut@@ Xu, Liping @@aut@@ |
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Yang, Yingying ddc 580 fid BIODIV bkl 42.00 misc Sugarcane misc Low nitrogen misc Transcriptome misc Physiological misc Hormone misc Nitrogen metabolism Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress |
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transcripts and low nitrogen tolerance: regulatory and metabolic pathways in sugarcane under low nitrogen stress |
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Transcripts and low nitrogen tolerance: Regulatory and metabolic pathways in sugarcane under low nitrogen stress |
| abstract |
Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes (NSIs) of plant fresh weight and plant N accumulation in ROC22 was respectively 38.18% and 17.44% lower than that of Badila. Based on the morphological and physiological measurements and the expression of eight key genes in N metabolism, the leaves (6 h) and roots (3 h) of ROC22 and Badila under low N condition (0.6 mM N) were selected for RNA-Seq analysis. In the leaves and roots, the total and up-regulated numbers of differentially expressed genes (DEGs) in ROC22 was significantly higher than that of Badila. The specific DEGs in the ROC22 leaves mainly enriched in photosynthesis and N metabolism, whereas those in the ROC22 roots mainly enriched in N metabolism and the hormone signal transduction pathway. MYB was the largest differentially expressed transcription factor (TF) gene family in both varieties, followed by AP2-EREBP. In the leaves and roots of ROC22, several genes related to IAA and ABA hormone pathways, N assimilation process, and PSI and PSII of the photosynthesis pathways modulated the physiological characteristics under low N stress, correspondingly, IAA concentration increased by 11.47% (leaves) and 9.24% (roots), and glutamine synthetase (GS) enzyme activities increased by 28.13% (leaves) and 36.97% (roots), which may explain the observed differences in low N tolerance between ROC22 and Badila. This study has provided a basis for improvement of sugarcane in adapting to low N conditions. |
| abstractGer |
Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes (NSIs) of plant fresh weight and plant N accumulation in ROC22 was respectively 38.18% and 17.44% lower than that of Badila. Based on the morphological and physiological measurements and the expression of eight key genes in N metabolism, the leaves (6 h) and roots (3 h) of ROC22 and Badila under low N condition (0.6 mM N) were selected for RNA-Seq analysis. In the leaves and roots, the total and up-regulated numbers of differentially expressed genes (DEGs) in ROC22 was significantly higher than that of Badila. The specific DEGs in the ROC22 leaves mainly enriched in photosynthesis and N metabolism, whereas those in the ROC22 roots mainly enriched in N metabolism and the hormone signal transduction pathway. MYB was the largest differentially expressed transcription factor (TF) gene family in both varieties, followed by AP2-EREBP. In the leaves and roots of ROC22, several genes related to IAA and ABA hormone pathways, N assimilation process, and PSI and PSII of the photosynthesis pathways modulated the physiological characteristics under low N stress, correspondingly, IAA concentration increased by 11.47% (leaves) and 9.24% (roots), and glutamine synthetase (GS) enzyme activities increased by 28.13% (leaves) and 36.97% (roots), which may explain the observed differences in low N tolerance between ROC22 and Badila. This study has provided a basis for improvement of sugarcane in adapting to low N conditions. |
| abstract_unstemmed |
Understanding the molecular regulatory mechanism of physiological characteristics is essential to improve low nitrogen (N) tolerance in sugarcane. We selected sugarcane varieties ROC22 (low N-tolerant variety) and Badila (low N-sensitive variety) as experimental materials, and N sensitivity indexes (NSIs) of plant fresh weight and plant N accumulation in ROC22 was respectively 38.18% and 17.44% lower than that of Badila. Based on the morphological and physiological measurements and the expression of eight key genes in N metabolism, the leaves (6 h) and roots (3 h) of ROC22 and Badila under low N condition (0.6 mM N) were selected for RNA-Seq analysis. In the leaves and roots, the total and up-regulated numbers of differentially expressed genes (DEGs) in ROC22 was significantly higher than that of Badila. The specific DEGs in the ROC22 leaves mainly enriched in photosynthesis and N metabolism, whereas those in the ROC22 roots mainly enriched in N metabolism and the hormone signal transduction pathway. MYB was the largest differentially expressed transcription factor (TF) gene family in both varieties, followed by AP2-EREBP. In the leaves and roots of ROC22, several genes related to IAA and ABA hormone pathways, N assimilation process, and PSI and PSII of the photosynthesis pathways modulated the physiological characteristics under low N stress, correspondingly, IAA concentration increased by 11.47% (leaves) and 9.24% (roots), and glutamine synthetase (GS) enzyme activities increased by 28.13% (leaves) and 36.97% (roots), which may explain the observed differences in low N tolerance between ROC22 and Badila. This study has provided a basis for improvement of sugarcane in adapting to low N conditions. |
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7.4019136 |