Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species

Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododen...
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Gespeichert in:

Autor*in:	Xu, Shi-da [verfasserIn] Geng, Xing-min [verfasserIn] Mao, Ling-feng [verfasserIn] Yi, Yin [verfasserIn] Gong, Ji-yi [verfasserIn] Xu, Xiao-rong [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2022

Schlagwörter:	Rhododendron Thermotolerance Heat Stress Response Transcriptome Transcription factor

Übergeordnetes Werk:	Enthalten in: Scientia horticulturae - Amsterdam [u.a.] : Elsevier Science, 1973, 303
Übergeordnetes Werk:	volume:303

DOI / URN:	10.1016/j.scienta.2022.111176

Katalog-ID:	ELV008069921

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245	1	0	\|a Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species
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520			\|a Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. The data obtained in this study can provide abundant genomic information for future research and help to clarify the molecular mechanisms of rhododendrons’ heat stress response.
650		4	\|a Rhododendron
650		4	\|a Thermotolerance
650		4	\|a Heat Stress Response
650		4	\|a Transcriptome
650		4	\|a Transcription factor
700	1		\|a Geng, Xing-min \|e verfasserin \|4 aut
700	1		\|a Mao, Ling-feng \|e verfasserin \|4 aut
700	1		\|a Yi, Yin \|e verfasserin \|4 aut
700	1		\|a Gong, Ji-yi \|e verfasserin \|4 aut
700	1		\|a Xu, Xiao-rong \|e verfasserin \|4 aut
773	0	8	\|i Enthalten in \|t Scientia horticulturae \|d Amsterdam [u.a.] : Elsevier Science, 1973 \|g 303 \|h Online-Ressource \|w (DE-627)320569748 \|w (DE-600)2016351-4 \|w (DE-576)105430587 \|x 1879-1018 \|7 nnns
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936	b	k	\|a 48.50 \|j Pflanzenproduktion: Allgemeines
951			\|a AR
952			\|d 303

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allfields	10.1016/j.scienta.2022.111176 doi (DE-627)ELV008069921 (ELSEVIER)S0304-4238(22)00297-7 DE-627 ger DE-627 rda eng 630 640 DE-600 48.50 bkl Xu, Shi-da verfasserin aut Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. The data obtained in this study can provide abundant genomic information for future research and help to clarify the molecular mechanisms of rhododendrons’ heat stress response. Rhododendron Thermotolerance Heat Stress Response Transcriptome Transcription factor Geng, Xing-min verfasserin aut Mao, Ling-feng verfasserin aut Yi, Yin verfasserin aut Gong, Ji-yi verfasserin aut Xu, Xiao-rong verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 303 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:303 GBV_USEFLAG_U SYSFLAG_U GBV_ELV GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.50 Pflanzenproduktion: Allgemeines AR 303
spelling	10.1016/j.scienta.2022.111176 doi (DE-627)ELV008069921 (ELSEVIER)S0304-4238(22)00297-7 DE-627 ger DE-627 rda eng 630 640 DE-600 48.50 bkl Xu, Shi-da verfasserin aut Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. The data obtained in this study can provide abundant genomic information for future research and help to clarify the molecular mechanisms of rhododendrons’ heat stress response. Rhododendron Thermotolerance Heat Stress Response Transcriptome Transcription factor Geng, Xing-min verfasserin aut Mao, Ling-feng verfasserin aut Yi, Yin verfasserin aut Gong, Ji-yi verfasserin aut Xu, Xiao-rong verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 303 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:303 GBV_USEFLAG_U SYSFLAG_U GBV_ELV GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.50 Pflanzenproduktion: Allgemeines AR 303
allfields_unstemmed	10.1016/j.scienta.2022.111176 doi (DE-627)ELV008069921 (ELSEVIER)S0304-4238(22)00297-7 DE-627 ger DE-627 rda eng 630 640 DE-600 48.50 bkl Xu, Shi-da verfasserin aut Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. The data obtained in this study can provide abundant genomic information for future research and help to clarify the molecular mechanisms of rhododendrons’ heat stress response. Rhododendron Thermotolerance Heat Stress Response Transcriptome Transcription factor Geng, Xing-min verfasserin aut Mao, Ling-feng verfasserin aut Yi, Yin verfasserin aut Gong, Ji-yi verfasserin aut Xu, Xiao-rong verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 303 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:303 GBV_USEFLAG_U SYSFLAG_U GBV_ELV GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.50 Pflanzenproduktion: Allgemeines AR 303
allfieldsGer	10.1016/j.scienta.2022.111176 doi (DE-627)ELV008069921 (ELSEVIER)S0304-4238(22)00297-7 DE-627 ger DE-627 rda eng 630 640 DE-600 48.50 bkl Xu, Shi-da verfasserin aut Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. The data obtained in this study can provide abundant genomic information for future research and help to clarify the molecular mechanisms of rhododendrons’ heat stress response. Rhododendron Thermotolerance Heat Stress Response Transcriptome Transcription factor Geng, Xing-min verfasserin aut Mao, Ling-feng verfasserin aut Yi, Yin verfasserin aut Gong, Ji-yi verfasserin aut Xu, Xiao-rong verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 303 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:303 GBV_USEFLAG_U SYSFLAG_U GBV_ELV GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.50 Pflanzenproduktion: Allgemeines AR 303
allfieldsSound	10.1016/j.scienta.2022.111176 doi (DE-627)ELV008069921 (ELSEVIER)S0304-4238(22)00297-7 DE-627 ger DE-627 rda eng 630 640 DE-600 48.50 bkl Xu, Shi-da verfasserin aut Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. The data obtained in this study can provide abundant genomic information for future research and help to clarify the molecular mechanisms of rhododendrons’ heat stress response. Rhododendron Thermotolerance Heat Stress Response Transcriptome Transcription factor Geng, Xing-min verfasserin aut Mao, Ling-feng verfasserin aut Yi, Yin verfasserin aut Gong, Ji-yi verfasserin aut Xu, Xiao-rong verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 303 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:303 GBV_USEFLAG_U SYSFLAG_U GBV_ELV GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.50 Pflanzenproduktion: Allgemeines AR 303
language	English
source	Enthalten in Scientia horticulturae 303 volume:303
sourceStr	Enthalten in Scientia horticulturae 303 volume:303
format_phy_str_mv	Article
bklname	Pflanzenproduktion: Allgemeines
institution	findex.gbv.de
topic_facet	Rhododendron Thermotolerance Heat Stress Response Transcriptome Transcription factor
dewey-raw	630
isfreeaccess_bool	false
container_title	Scientia horticulturae
authorswithroles_txt_mv	Xu, Shi-da @@aut@@ Geng, Xing-min @@aut@@ Mao, Ling-feng @@aut@@ Yi, Yin @@aut@@ Gong, Ji-yi @@aut@@ Xu, Xiao-rong @@aut@@
publishDateDaySort_date	2022-01-01T00:00:00Z
hierarchy_top_id	320569748
dewey-sort	3630
id	ELV008069921
language_de	englisch
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author	Xu, Shi-da
spellingShingle	Xu, Shi-da ddc 630 bkl 48.50 misc Rhododendron misc Thermotolerance misc Heat Stress Response misc Transcriptome misc Transcription factor Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species
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topic_title	630 640 DE-600 48.50 bkl Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species Rhododendron Thermotolerance Heat Stress Response Transcriptome Transcription factor
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title	Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species
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title_full	Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species
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title_sort	transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species
title_auth	Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species
abstract	Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. The data obtained in this study can provide abundant genomic information for future research and help to clarify the molecular mechanisms of rhododendrons’ heat stress response.
abstractGer	Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. The data obtained in this study can provide abundant genomic information for future research and help to clarify the molecular mechanisms of rhododendrons’ heat stress response.
abstract_unstemmed	Rhododendrons are prominent ornamental plants worldwide. The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. The data obtained in this study can provide abundant genomic information for future research and help to clarify the molecular mechanisms of rhododendrons’ heat stress response.
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title_short	Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species
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author2	Geng, Xing-min Mao, Ling-feng Yi, Yin Gong, Ji-yi Xu, Xiao-rong
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doi_str	10.1016/j.scienta.2022.111176
up_date	2024-07-06T18:26:12.922Z
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The molecular mechanism of thermotolerance in the Rhododendron genus is still largely unknown. Here, R. molle, R. delavayi, R. irroratum, and R. decorum were selected to determine the molecular mechanism of the heat stress response in rhododendrons by transcriptomic studies. According to the heat injury index, the order of thermotolerance was R. molle > R. irroratum > R. decorum > R. delavayi. R. delavayi was sequenced with the reference genome, while other rhododendrons were sequenced without the reference genome. Two sequencing libraries of each rhododendron, namely one control and one heat stress-treated sample, were constructed for comparative transcriptomic analysis. In R. delavayi, 90.99% clean reads were mapped, and 86,621, 121,343, and 99,992 unigenes were identified in R. molle, R. irroratum, and R. decorum, respectively. Unigenes were annotated in the KEGG, GO, and Nr databases. According to the Nr annotation results, rhododendrons had a high gene similarity with Actinidia chinensis and Camellia sinensis. Between two sequencing libraries of R. molle, R. delavayi, R. irroratum, and R. decorum, 9017, 6916, 5243, and 11751 transcripts, respectively, were further identified as differentially expressed genes (DEGs). Transcription factor (TF) families enriched in DEGs mainly include ERF, bHLH, MYB, WRKY, and MYB_related, and several TFs were commonly regulated in all plants, such as BBR/BPC7, bZIP1, bZIP12, COL15, BBX22, ERF118-2, DREB2C, HsfC1, HSF8, LBD41, PHERES, RADIALIS-like 4, SPL14, SPL9 bHLH041, Dof5.4, ERF061, and PTI6. 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Transcriptome analysis and identification of the genes associated with the heat stress response in four rhododendron species

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