PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks

Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cock...
Ausführliche Beschreibung

Gespeichert in:

Autor*in:	Díaz-Galián, María Victoria [verfasserIn] Vega-Rodríguez, Miguel A. [verfasserIn] Molina, Felipe [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2022

Schlagwörter:	Phage therapy Phage cocktail Phage-bacteria infection network R package

Übergeordnetes Werk:	Enthalten in: Computer methods and programs in biomedicine - Amsterdam : Elsevier, 1985, 221
Übergeordnetes Werk:	volume:221

DOI / URN:	10.1016/j.cmpb.2022.106865

Katalog-ID:	ELV008130450

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520			\|a Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cocktails. Thus, this article presents an R package called PhageCocktail to automatically design efficient phage cocktails from phage-bacteria infection networks.
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700	1		\|a Vega-Rodríguez, Miguel A. \|e verfasserin \|0 (orcid)0000-0002-3003-758X \|4 aut
700	1		\|a Molina, Felipe \|e verfasserin \|0 (orcid)0000-0002-9167-7097 \|4 aut
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912			\|a GBV_ILN_2004
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912			\|a GBV_ILN_2065
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912			\|a GBV_ILN_2122
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912			\|a GBV_ILN_2507
912			\|a GBV_ILN_2522
912			\|a GBV_ILN_4035
912			\|a GBV_ILN_4037
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allfields	10.1016/j.cmpb.2022.106865 doi (DE-627)ELV008130450 (ELSEVIER)S0169-2607(22)00247-4 DE-627 ger DE-627 rda eng 004 610 VZ 44.32 bkl Díaz-Galián, María Victoria verfasserin (orcid)0000-0003-2543-6081 aut PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cocktails. Thus, this article presents an R package called PhageCocktail to automatically design efficient phage cocktails from phage-bacteria infection networks. Phage therapy Phage cocktail Phage-bacteria infection network R package Vega-Rodríguez, Miguel A. verfasserin (orcid)0000-0002-3003-758X aut Molina, Felipe verfasserin (orcid)0000-0002-9167-7097 aut Enthalten in Computer methods and programs in biomedicine Amsterdam : Elsevier, 1985 221 Online-Ressource (DE-627)265783593 (DE-600)1466281-4 (DE-576)074890883 1872-7565 nnns volume:221 GBV_USEFLAG_U GBV_ELV SYSFLAG_U SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_150 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 44.32 Medizinische Mathematik medizinische Statistik VZ AR 221
spelling	10.1016/j.cmpb.2022.106865 doi (DE-627)ELV008130450 (ELSEVIER)S0169-2607(22)00247-4 DE-627 ger DE-627 rda eng 004 610 VZ 44.32 bkl Díaz-Galián, María Victoria verfasserin (orcid)0000-0003-2543-6081 aut PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cocktails. Thus, this article presents an R package called PhageCocktail to automatically design efficient phage cocktails from phage-bacteria infection networks. Phage therapy Phage cocktail Phage-bacteria infection network R package Vega-Rodríguez, Miguel A. verfasserin (orcid)0000-0002-3003-758X aut Molina, Felipe verfasserin (orcid)0000-0002-9167-7097 aut Enthalten in Computer methods and programs in biomedicine Amsterdam : Elsevier, 1985 221 Online-Ressource (DE-627)265783593 (DE-600)1466281-4 (DE-576)074890883 1872-7565 nnns volume:221 GBV_USEFLAG_U GBV_ELV SYSFLAG_U SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_150 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 44.32 Medizinische Mathematik medizinische Statistik VZ AR 221
allfields_unstemmed	10.1016/j.cmpb.2022.106865 doi (DE-627)ELV008130450 (ELSEVIER)S0169-2607(22)00247-4 DE-627 ger DE-627 rda eng 004 610 VZ 44.32 bkl Díaz-Galián, María Victoria verfasserin (orcid)0000-0003-2543-6081 aut PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cocktails. Thus, this article presents an R package called PhageCocktail to automatically design efficient phage cocktails from phage-bacteria infection networks. Phage therapy Phage cocktail Phage-bacteria infection network R package Vega-Rodríguez, Miguel A. verfasserin (orcid)0000-0002-3003-758X aut Molina, Felipe verfasserin (orcid)0000-0002-9167-7097 aut Enthalten in Computer methods and programs in biomedicine Amsterdam : Elsevier, 1985 221 Online-Ressource (DE-627)265783593 (DE-600)1466281-4 (DE-576)074890883 1872-7565 nnns volume:221 GBV_USEFLAG_U GBV_ELV SYSFLAG_U SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_150 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 44.32 Medizinische Mathematik medizinische Statistik VZ AR 221
allfieldsGer	10.1016/j.cmpb.2022.106865 doi (DE-627)ELV008130450 (ELSEVIER)S0169-2607(22)00247-4 DE-627 ger DE-627 rda eng 004 610 VZ 44.32 bkl Díaz-Galián, María Victoria verfasserin (orcid)0000-0003-2543-6081 aut PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cocktails. Thus, this article presents an R package called PhageCocktail to automatically design efficient phage cocktails from phage-bacteria infection networks. Phage therapy Phage cocktail Phage-bacteria infection network R package Vega-Rodríguez, Miguel A. verfasserin (orcid)0000-0002-3003-758X aut Molina, Felipe verfasserin (orcid)0000-0002-9167-7097 aut Enthalten in Computer methods and programs in biomedicine Amsterdam : Elsevier, 1985 221 Online-Ressource (DE-627)265783593 (DE-600)1466281-4 (DE-576)074890883 1872-7565 nnns volume:221 GBV_USEFLAG_U GBV_ELV SYSFLAG_U SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_150 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 44.32 Medizinische Mathematik medizinische Statistik VZ AR 221
allfieldsSound	10.1016/j.cmpb.2022.106865 doi (DE-627)ELV008130450 (ELSEVIER)S0169-2607(22)00247-4 DE-627 ger DE-627 rda eng 004 610 VZ 44.32 bkl Díaz-Galián, María Victoria verfasserin (orcid)0000-0003-2543-6081 aut PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cocktails. Thus, this article presents an R package called PhageCocktail to automatically design efficient phage cocktails from phage-bacteria infection networks. Phage therapy Phage cocktail Phage-bacteria infection network R package Vega-Rodríguez, Miguel A. verfasserin (orcid)0000-0002-3003-758X aut Molina, Felipe verfasserin (orcid)0000-0002-9167-7097 aut Enthalten in Computer methods and programs in biomedicine Amsterdam : Elsevier, 1985 221 Online-Ressource (DE-627)265783593 (DE-600)1466281-4 (DE-576)074890883 1872-7565 nnns volume:221 GBV_USEFLAG_U GBV_ELV SYSFLAG_U SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_150 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 44.32 Medizinische Mathematik medizinische Statistik VZ AR 221
language	English
source	Enthalten in Computer methods and programs in biomedicine 221 volume:221
sourceStr	Enthalten in Computer methods and programs in biomedicine 221 volume:221
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topic_facet	Phage therapy Phage cocktail Phage-bacteria infection network R package
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container_title	Computer methods and programs in biomedicine
authorswithroles_txt_mv	Díaz-Galián, María Victoria @@aut@@ Vega-Rodríguez, Miguel A. @@aut@@ Molina, Felipe @@aut@@
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author	Díaz-Galián, María Victoria
spellingShingle	Díaz-Galián, María Victoria ddc 004 bkl 44.32 misc Phage therapy misc Phage cocktail misc Phage-bacteria infection network misc R package PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks
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topic_title	004 610 VZ 44.32 bkl PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks Phage therapy Phage cocktail Phage-bacteria infection network R package
topic	ddc 004 bkl 44.32 misc Phage therapy misc Phage cocktail misc Phage-bacteria infection network misc R package
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title	PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks
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title_full	PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks
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title_sort	phagecocktail: an r package to design phage cocktails from experimental phage-bacteria infection networks
title_auth	PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks
abstract	Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cocktails. Thus, this article presents an R package called PhageCocktail to automatically design efficient phage cocktails from phage-bacteria infection networks.
abstractGer	Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cocktails. Thus, this article presents an R package called PhageCocktail to automatically design efficient phage cocktails from phage-bacteria infection networks.
abstract_unstemmed	Background and objective: Phage therapy is a resurgent strategy used in medicine and the food industry to lyse bacteria that cause damage to health or spoil a food product. Frequently, phage-bacteria infection networks have a large size, making it impossible to manually study all possible phage cocktails. Thus, this article presents an R package called PhageCocktail to automatically design efficient phage cocktails from phage-bacteria infection networks.
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title_short	PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks
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author2	Vega-Rodríguez, Miguel A. Molina, Felipe
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up_date	2024-07-06T18:38:55.001Z
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PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks

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